EsuBft98_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft98_8a-0001
Unique NameEsuBft98_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:191051..196115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8J0
ProteomeIdEsuBft98_8
Protein domainsSSF160631
Protein domainsIPR018958
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length272
Hectar predicted targeting categoryother localisation
Evalue2.23e-86
EggNOG OGs2BVA8@1|root,2S24U@2759|Eukaryota
Ec32 ortholog descriptionSMI1/KNR4 like domain
Ec32 orthologEc-14_003190.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft98_8aEsuBft98_8aEctocarpus subulatus male Bft15bgeneScaffold_510 191051..196115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_8a-0001EsuBft98_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 193165..196071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_8a-0001-exonagat-exon-75118Ectocarpus subulatus male Bft15bexonScaffold_510 191051..193377 -
EsuBft98_8a-0001-exonagat-exon-75122Ectocarpus subulatus male Bft15bexonScaffold_510 193978..194073 -
EsuBft98_8a-0001-exonEsuBft98_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 194280..194351 -
EsuBft98_8a-0001-exonagat-exon-75121Ectocarpus subulatus male Bft15bexonScaffold_510 194799..194842 -
EsuBft98_8a-0001-exonagat-exon-75120Ectocarpus subulatus male Bft15bexonScaffold_510 195332..195400 -
EsuBft98_8a-0001-exonagat-exon-75119Ectocarpus subulatus male Bft15bexonScaffold_510 195996..196115 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_8a-0001-exonagat-three_prime_utr-23843Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_510 191051..193164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_8a-0001-cdsEsuBft98_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 193165..193377 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_8a-0001-exonagat-five_prime_utr-15550Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 196072..196115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft98_8a-0001 ID=EsuBft98_8a-0001|Name=EsuBft98_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2728bp|location=Sequence derived from alignment at Scaffold_510:191051..196115- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTTTATCTTTCTCTATACAAACCGTAGTGGTCGCATGCCGTCATGACC
CATGTCGCGGAGGAAGGGAACCCCCGGAAGGGGGGCATGACCTATGATGA
GATAAACCAGAGCGTCCTAGACGTGGAATCCTGGTTCAAGAAGCACGCAC
GCGGCTGTCTAGACAACGCGGAAGGGGCACAGGATGCAGACATTCAGGCG
CTGGAGAAGGCCACGGACACCACAATTCCGGAGGAGCTGCGATCAATCAT
GACAATCCAGGACGGGCAACTCTGGTTCTCCGAGAAGCAAGCACTTACCT
GCAAGGCGATGGTAGCGGCGGCTTTCAAGATGGAAGGACGGGTGCCCGGT
TGGAGAGCAGGGCTGATACCCTTCGCCAAGGATGTCGACGACAACTTTTT
GGTTACGGACACTCAAGCAAGAGGTTGTCCGGTGGTAGAGTGGGATGCAG
CAGACGGTGAGGGTGGGACAGTGGCGACGACTTTCTCGCTCTTCCTAGAG
GGCTTCAGGAACGAGCTGCTTGCCGGGCGATGCGAATACGTGGAGGGACT
GGGCGTTGTCGAGAAAATCACGAAGAGTAACGTTAGCAGCCCTCCCCGCA
GCAACCGAAAATAATGTTCTAGGCTAGGCGAGGGGGCGAAAATTGATCAA
AGAAGACACTGGACAGCCATCTATACTTGTTTTTTCCAGAAAAGTTCTTG
GTTGCTCCAGTACAGAGAGAGGGTACTCGATTAGAAGCTCTCGTTATGGA
CGAGACTGGGGCGCTTCGTTCCGTCTGTGGGCTACAAATGACCGCAATAT
AGGTTTTTGCCTAGGGCTTCTTATCGGGACTCACAGATGGCGCTTATGTT
CCGTAGTCATGATTTGGGCATTGATATTCCGTAGTCATGACTTGAGCATG
AGTCTAAGTTCTTTACTGCCGGGTTTTGAAGTACGGGTACTATCAACGTA
GGGTTTTGGTATAACAACGTATGTGGGGATTCTATGCATACGTCGAGGAG
GTCTGGAAGGAGGTCGTCGACACGATGAAGGATCGCCACTCATTGGTGTG
GGCGTAGAATTCACCAGTCCTTATGGGACAAGTTGGTGAACTCATCATCC
GAAGTGCGTCTGTGTGAACAAAGGTTCCTTGGACTGGATTTGGAGGGTTT
GGGGCGCGTACGGACGGAATCGCGTCGAAACAAAGCTTATATATCAAACG
CTCGTAAGACAAATTGAATTCGTTGATACTTCGAAGTATATTACAGTGTT
GCCGAACAAGACAGTGTAGCCTGCAACCAGCAAGACCCCAGATACACGCA
TTCAACCAAACAGCAAAATCAGAACAAAGATACAGGAAGACACACACGAA
GAATCGTGACGAAAACAACTGCTGCCCCATTAAAGAAATGTTGCCTTGGC
GAAAGTCGCGCAGGGGGTCAACGGTCGGAAAAACCCCGGGCTCCAAGCCC
AGAGAGCACATTCCAAATACACGTTACTCTTTAACCCATCAGGCTACACG
GTTCGCGACACAGCTGCGTGAAGTGTGCATACATGCTCATCTTGCCCTGT
ACCTTGTATCGTCTAACACCAATATTGTAATTGACGGACGGTGCATGATA
TAGATACCCCAAGGCTCCAGGATTCCTTCGACTCCTCAAAAAAAAAAAAA
ATCGCACTGCGCACACCAGTAAGCATGCATCATTGTCCCAAATCTCTCCC
TTGTTTTACGTTGTACGGCGTTGTCCACCACGACCAAGATGCCCTCTCCT
CGCCCCTCACCACTAGGCCACGAATACTCCATTTACCGCAGTAACGAAAA
GCAGATACGATGTTATTGCGGATGCCAAGTGAGACCGGTTGGCCAGTCAT
TCGAGCCTTGATAGCAGCGAACAGTATCCATAGCGGCATGCCGGATCCCC
CCCCACCTCCCGTCCTTTCCTCGCGTGTCAAACGGACACGCGCACTTTCT
CACATGGACGTGTTCACACAAAAAAACTAGTGCTGTGGCAATGTGCTTTA
AATGGCAGGGGCCTACGCCCTGCGTATTGCCGAGTAGCACCCCCCGGGTC
TGCGCTGCCTCCCTCTCCCTCATGCAAAACTATAGGTACCATGCTCCCTT
ACTCAAAAGAGTGACATTCACACAAATTACCGTGATGAGGCTCACTTGGC
GGGTCTTACCCTACGCCTTTCCACTGCTGCCTGGCACAGCTACCAAGACG
CGCAAAGAGGGCAAGAGTACCAAAAGCGTACCTACGAACATGTGGGTTAT
GGCACCGAACACCCGTCCTAACTCCCTGTCTGCATCTTACCCCAGTATAT
AAGCACGATTTGGTGATGGTCGTTCTCTGGCCCATCTAGCTTGAGAATGA
AAACAACCCCAACTCACGCGCTTTGCGACGTTTCGGAAACACCCCCTCCT
CCCAGAAAACAAAATAAATGCCACCGACTCCCAAACACGATTGCAATCGA
AGTCGAAACATGAATGCAATCGAGTTGACCAAGTTCTTCTGTCCTTGTGA
CCTTTATGACATCGGTGCGTACGCCACACAGCTGGGCACCGAAACGCAAT
TTGTCCGAATACCGCCGTTAGAGTCTTTTCCAAACAGCAGTGTTCCTCCT
TCGTATCTCTTCCAGCACCAACAGAAAACACATGCGACAGATACTGCTAT
CGCTGCAACACGGCAATTGGCCTCGCCCTCTCAAAAGGTGACACAAAATA
AGACCAGACCTATTTACTAAAGAGCGAT
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protein sequence of EsuBft98_8a-0001

>EsuBft98_8 ID=EsuBft98_8|Name=EsuBft98_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MTHVAEEGNPRKGGMTYDEINQSVLDVESWFKKHARGCLDNAEGAQDADI
QALEKATDTTIPEELRSIMTIQDGQLWFSEKQALTCKAMVAAAFKMEGRV
PGWRAGLIPFAKDVDDNFLVTDTQARGCPVVEWDAADGEGGTVATTFSLF
LEGFRNELLAGRCEYVEGLGVVEKITKSNVSSPPRSNRK
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mRNA from alignment at Scaffold_510:191051..196115-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft98_8a-0001 ID=EsuBft98_8a-0001|Name=EsuBft98_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5065bp|location=Sequence derived from alignment at Scaffold_510:191051..196115- (Ectocarpus subulatus male Bft15b)
TGCTTTATCTTTCTCTATACAAACCGTAGTGGTCGCATGCCGTCATGACC
CATGTCGCGGAGGAAGGGAACCCCCGGAAGGGGGGCATGACCTATGATGA
GATAAACCAGAGCGTCCTAGGTGAGATGACTAAACTACTGCTGTAAATTG
CAGATGTTCCTTCGCGATATCGTGGAGAAGATCGCCCGCTGCTGCTGTCG
GGGTATATGACTCATGTTACTCTCATGCCACGTTGCGGAGGGGAGAATAC
CTCGAAACAGTTTCTTGACCTTTGCTGGGATATGTAGACCAGAGCGTCCT
TGGTGAGATATTGAAACATGTTCGCGAAAGTCAAAGAACAGATTATGGCG
CGGCCGCGGTCCTGATTTGTAGAGGCGCATACTGCTATGTAGACTATGTC
CGGTAGGCAAACGACAACAGATCCACCGCCGGACAAAATACAGCGGTGTG
TCGCATGGTATATTGCATGTTTGCGAGATCCGTACAATCAAGGTGTGGCT
GCGACGTGTGCGCTGGTTAAAGACTCCAATATACTTTACGGTAGCATGTA
GTCTGCTTGCATCCCAGATATCATTGTAGGAATCAAGTCGCTATGCATAG
TCTACATTGCTTGTCTTCGATAGGCGCAAAGTTCGCAGTCCGGAAACATA
GTTTTCGGGACGTGATGCGACCACGGTTCCGTTGTTCCACCTTGCATGGT
GGTACTCTCTCTCAGACGTGGAATCCTGGTTCAAGAAGCACGCACGCGGC
TGTCTAGACAACGCGGAAGGGGCACAGGATGCAGGTGAAGTGCGGCTATG
GGTGGTTGTCTTTACAATGGGGCGATCCTGTTAGTGCTACACGTACATTG
TTTTCTCGAGAGTAAAGCTGGACCGTTCTCTCTACGGCAGCAGGTTGGCA
CACAAAGGGTGCTGGAAGGAGATTGCCCGTGGGGTGGTGGTGGTGGTGGT
GTTGGTGTGGGGAGACGCCCGTTAGTGCATTTACTCTCAAGCGATAGTGA
GCAGCATCTGAAAAACAAAAGTTCCCCTGCCGAAAGCCGTACTCACTCGC
GATCTCGCGATGCACCTGGTCGGCGACGACATCGTGGGGTTGATGTGAAT
TTTCAGCTACTGTCGTGTCTTGAGTTCTAGACAGACATCAGCAGTTTCCC
AGAGATTTAGAGGTGGGGATATCTCTCGGTTGCTCCACCGATAGAATCAA
GGAAACCCTTAGCGAGGTGTCTGAGCTTCCCTGTTGTTTGCGTACGTACG
CTGCTCGTCCAAACACCTACCAGACATTCAGGCGCTGGAGAAGGCCACGG
ACACCACAATTCCGGAGGTCGGTGGAGAGAGCAGAATGTTAAGGAGGGAC
CTTGACTTTCTCTTCTTGATACCTGTCTGAGCCTCGTCTTCCAGATTTCG
AGGCTCTGCAAAGCCGGAACCGTTGCCATGCGATTCTGCACGAAGCCCAA
CGGCAACCTATTGTCCATATTTCACTAATGAGAATGCATGTCGTAAAATG
AGAACAAGAGTAGTTGGCGTTCTGCAGGCTATGCTGTTGTGGAGAAATCA
ATAATAGTGAGTTCTACTGTAGGTTCAGCACCCGCCGTGGGGGTGCTTGG
ATCCGTTGACACTGCGATACAGGAACACCGGGCCGAAACCAGCCCGAAGT
TCACCCTTTGGGTCGCTGCATCGATGCCGTCTGTACCGTATGCGGGTCCT
TGCTCTTTGTGTGCTTGATCATCAAATGTTGGTTCTCACCCCTCTGAGTT
TGCTACAAACGCAGGAGCTGCGATCAATCATGACAATCCAGGACGGGCAA
CTCTGGTTCTCCGAGAAGCAAGCACTTACCTGCAAGGTGTGGTTGTCCGG
TGGTGGTGTAGTGTGTACGCCGGGGTGCGTGCGGTGTGTATCCCTACTAC
GTGTGTACCGTGTGAAAGTCCCGTGCCGCAACCAGAGCAATTATATAGAA
GTAGTAGATATCCTGGCCGAACAACCAACGAACGTTTGAGATGCTACCGG
TACAAACACACCTGATCGGGTGTGTGTTTGTATACGCGATAGGCGATGGT
AGCGGCGGCTTTCAAGATGGAAGGACGGGTGCCCGGTTGGAGAGCAGGGC
TGATACCCTTCGCCAAGGATGTCGACGACAACTTTTTGGTAAGTCACGAA
CGATGTATTGAGTGACTGCTTGTTGTCAGCCAATCGATCTACCGTCTGAC
CACTCTTTGTAGTGTACAGTACCGTGCCGTACTGTGGTGCGAAATGTTCC
TTCATTTTCTTGAAAAGACGAACAAGGTTTCAACTTCGCCCGCACTTCGC
CGCTTGGTCCAGCGACTGGTCACCTTCGGCGAAAACATGTGTTTTCAGCA
TTAAATGCTCTCAGTGAACCTCTGAGCGTTGACATATGATGCCAGCAGAG
TGCGTGGCAGCTGACCCACAACTTTCTGCCTACTATTAATACGTATTTGG
TGGGTGAGGATTCATCTTCCGAAACCTTCAACATTTCGGGAACGTGGATC
CTGTAGGGTACCCTCCTCCCGCTTTCTCTGTGTTATCCAGGAAAGAAAGA
AAAAGGTCGAAGTCACCTCACGTGTACGCACAACATACAGAGAAAGATGG
TCGTCTTCGAGTATCAATACCCATCCTCCGTGGTCGACATTGTGTATTGC
TCGAGAACAAGGGTGAGGTGCACGTGTACTAAATAACAACTGTGACCTTT
GCATGTGTGCACGTACGTTCGCCGGTACCTGTGAACAGGTTACGGACACT
CAAGCAAGAGGTTGTCCGGTGGTAGAGTGGGATGCAGCAGACGGTGAGGG
TGGGACAGTGGCGACGACTTTCTCGCTCTTCCTAGAGGGCTTCAGGAACG
AGCTGCTTGCCGGGCGATGCGAATACGTGGAGGGACTGGGCGTTGTCGAG
AAAATCACGAAGAGTAACGTTAGCAGCCCTCCCCGCAGCAACCGAAAATA
ATGTTCTAGGCTAGGCGAGGGGGCGAAAATTGATCAAAGAAGACACTGGA
CAGCCATCTATACTTGTTTTTTCCAGAAAAGTTCTTGGTTGCTCCAGTAC
AGAGAGAGGGTACTCGATTAGAAGCTCTCGTTATGGACGAGACTGGGGCG
CTTCGTTCCGTCTGTGGGCTACAAATGACCGCAATATAGGTTTTTGCCTA
GGGCTTCTTATCGGGACTCACAGATGGCGCTTATGTTCCGTAGTCATGAT
TTGGGCATTGATATTCCGTAGTCATGACTTGAGCATGAGTCTAAGTTCTT
TACTGCCGGGTTTTGAAGTACGGGTACTATCAACGTAGGGTTTTGGTATA
ACAACGTATGTGGGGATTCTATGCATACGTCGAGGAGGTCTGGAAGGAGG
TCGTCGACACGATGAAGGATCGCCACTCATTGGTGTGGGCGTAGAATTCA
CCAGTCCTTATGGGACAAGTTGGTGAACTCATCATCCGAAGTGCGTCTGT
GTGAACAAAGGTTCCTTGGACTGGATTTGGAGGGTTTGGGGCGCGTACGG
ACGGAATCGCGTCGAAACAAAGCTTATATATCAAACGCTCGTAAGACAAA
TTGAATTCGTTGATACTTCGAAGTATATTACAGTGTTGCCGAACAAGACA
GTGTAGCCTGCAACCAGCAAGACCCCAGATACACGCATTCAACCAAACAG
CAAAATCAGAACAAAGATACAGGAAGACACACACGAAGAATCGTGACGAA
AACAACTGCTGCCCCATTAAAGAAATGTTGCCTTGGCGAAAGTCGCGCAG
GGGGTCAACGGTCGGAAAAACCCCGGGCTCCAAGCCCAGAGAGCACATTC
CAAATACACGTTACTCTTTAACCCATCAGGCTACACGGTTCGCGACACAG
CTGCGTGAAGTGTGCATACATGCTCATCTTGCCCTGTACCTTGTATCGTC
TAACACCAATATTGTAATTGACGGACGGTGCATGATATAGATACCCCAAG
GCTCCAGGATTCCTTCGACTCCTCAAAAAAAAAAAAAATCGCACTGCGCA
CACCAGTAAGCATGCATCATTGTCCCAAATCTCTCCCTTGTTTTACGTTG
TACGGCGTTGTCCACCACGACCAAGATGCCCTCTCCTCGCCCCTCACCAC
TAGGCCACGAATACTCCATTTACCGCAGTAACGAAAAGCAGATACGATGT
TATTGCGGATGCCAAGTGAGACCGGTTGGCCAGTCATTCGAGCCTTGATA
GCAGCGAACAGTATCCATAGCGGCATGCCGGATCCCCCCCCACCTCCCGT
CCTTTCCTCGCGTGTCAAACGGACACGCGCACTTTCTCACATGGACGTGT
TCACACAAAAAAACTAGTGCTGTGGCAATGTGCTTTAAATGGCAGGGGCC
TACGCCCTGCGTATTGCCGAGTAGCACCCCCCGGGTCTGCGCTGCCTCCC
TCTCCCTCATGCAAAACTATAGGTACCATGCTCCCTTACTCAAAAGAGTG
ACATTCACACAAATTACCGTGATGAGGCTCACTTGGCGGGTCTTACCCTA
CGCCTTTCCACTGCTGCCTGGCACAGCTACCAAGACGCGCAAAGAGGGCA
AGAGTACCAAAAGCGTACCTACGAACATGTGGGTTATGGCACCGAACACC
CGTCCTAACTCCCTGTCTGCATCTTACCCCAGTATATAAGCACGATTTGG
TGATGGTCGTTCTCTGGCCCATCTAGCTTGAGAATGAAAACAACCCCAAC
TCACGCGCTTTGCGACGTTTCGGAAACACCCCCTCCTCCCAGAAAACAAA
ATAAATGCCACCGACTCCCAAACACGATTGCAATCGAAGTCGAAACATGA
ATGCAATCGAGTTGACCAAGTTCTTCTGTCCTTGTGACCTTTATGACATC
GGTGCGTACGCCACACAGCTGGGCACCGAAACGCAATTTGTCCGAATACC
GCCGTTAGAGTCTTTTCCAAACAGCAGTGTTCCTCCTTCGTATCTCTTCC
AGCACCAACAGAAAACACATGCGACAGATACTGCTATCGCTGCAACACGG
CAATTGGCCTCGCCCTCTCAAAAGGTGACACAAAATAAGACCAGACCTAT
TTACTAAAGAGCGAT
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Coding sequence (CDS) from alignment at Scaffold_510:191051..196115-

>EsuBft98_8a-0001 ID=EsuBft98_8a-0001|Name=EsuBft98_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_510:191051..196115- (Ectocarpus subulatus male Bft15b)
ATGACCCATGTCGCGGAGGAAGGGAACCCCCGGAAGGGGGGCATGACCTA
TGATGAGATAAACCAGAGCGTCCTAGACGTGGAATCCTGGTTCAAGAAGC
ACGCACGCGGCTGTCTAGACAACGCGGAAGGGGCACAGGATGCAGACATT
CAGGCGCTGGAGAAGGCCACGGACACCACAATTCCGGAGGAGCTGCGATC
AATCATGACAATCCAGGACGGGCAACTCTGGTTCTCCGAGAAGCAAGCAC
TTACCTGCAAGGCGATGGTAGCGGCGGCTTTCAAGATGGAAGGACGGGTG
CCCGGTTGGAGAGCAGGGCTGATACCCTTCGCCAAGGATGTCGACGACAA
CTTTTTGGTTACGGACACTCAAGCAAGAGGTTGTCCGGTGGTAGAGTGGG
ATGCAGCAGACGGTGAGGGTGGGACAGTGGCGACGACTTTCTCGCTCTTC
CTAGAGGGCTTCAGGAACGAGCTGCTTGCCGGGCGATGCGAATACGTGGA
GGGACTGGGCGTTGTCGAGAAAATCACGAAGAGTAACGTTAGCAGCCCTC
CCCGCAGCAACCGAAAATAA
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