EsuBft98_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft98_3a-0001
Unique NameEsuBft98_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:256665..260922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8J7
ProteomeIdEsuBft98_3
Protein domainsIPR006649
Protein domainsIPR027141
Protein domainsIPR010920
Protein domainsG3DSA
Protein domainsIPR001163
Ownerapollo_admin@sb-roscoff.fr
Noteprobable u6 snrna-associated sm-like protein lsm4 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1826
Hectar predicted targeting categoryother localisation
Evalue1.91e-60
EggNOG OGsKOG3293@1|root,KOG3293@2759|Eukaryota
Ec32 ortholog descriptionSm-like protein LSm4
Ec32 orthologEc-14_003260.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameLSM4
KEGG koko:K03065,ko:K06883,ko:K12623
KEGG Pathwayko03018,ko03040,ko03050,ko05169,map03018,map03040,map03050,map05169
KEGG ModuleM00341,M00354,M00396,M00397
GOsGO:0000243,GO:0000245,GO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042731,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097458,GO:0097525,GO:0097526,GO:0120025,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990234,GO:1990726,GO:1990904
DescriptionU6 snRNA binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko03051
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005681
GO0005654
GO0005622
GO0005688
GO0006898
GO0006397
GO0043928
GO0040011
GO0005829
GO0008340
GO0009792
GO0007281
GO0040027
GO0010171
GO0008380
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft98_3aEsuBft98_3aEctocarpus subulatus male Bft15bgeneScaffold_510 256665..260922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_3a-0001EsuBft98_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 257973..260902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_3a-0001-exonagat-exon-75078Ectocarpus subulatus male Bft15bexonScaffold_510 256665..257983 -
EsuBft98_3a-0001-exonEsuBft98_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 258924..259148 -
EsuBft98_3a-0001-exonagat-exon-75077Ectocarpus subulatus male Bft15bexonScaffold_510 259556..259673 -
EsuBft98_3a-0001-exonagat-exon-75076Ectocarpus subulatus male Bft15bexonScaffold_510 260192..260332 -
EsuBft98_3a-0001-exonagat-exon-75079Ectocarpus subulatus male Bft15bexonScaffold_510 260900..260922 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_3a-0001-exonagat-three_prime_utr-23839Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_510 256665..257972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_3a-0001-cdsEsuBft98_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 257973..257983 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_3a-0001-exonagat-five_prime_utr-15545Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 260903..260922 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft98_3a-0001 ID=EsuBft98_3a-0001|Name=EsuBft98_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1826bp|location=Sequence derived from alignment at Scaffold_510:256665..260922- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCCTGCAACGCCAACGAACATGCTTCCGCTCTCGTTGCTTAAGACTGCC
CAGGGCCAGCCTATGCTGGTGGAGCTGAAGAACGGCGACACCTACAACGG
GCGACTCGACAACTGCGACAGCTGGATGAACATCAAGCTGAAGGACGTTA
TTTTCACCTCAAGGGACGCGGACAAGTTCGTGAAGATGGTGGAGGTGTAC
GTGCGCGGCAACAGCATCAAGTACGTCACGATTCCAGAGGAGGTGTTGGA
CATGGTGCAAGAAGAAGACCTCTCCAAAGAGAAGCGCGCCATGGGCGGGA
GAGGTCGCGGTCGCGGGCGAGGCGGACGGGACGGAGGCAGGGGCGGCGGC
AGGGGGCGGGGCGACGGGAGAGGTCGTGGCCGCGGGCGAGGCGGGCGGGA
CGGGGGCAGGGGGGGGGGCGGAAGGGGGCGGGGCGGAGGCAGGGGTGGGG
GCAGAGGGAGAGGTGAGGGGAGAGGTGCCGCCGGGCGGGGAGACGGCGGC
GGGCGAGGGCGGGGCTGAAGACCCGCTCGTGCGGCGGGCGCGTGCCTCTC
AGCGAAGCGGAGCAATGGCAATTCGACGACGATGGCGGCCGGGGAGAACA
CGGCGGCCCTCGCGGCGGCCAAAACAGGTCTCGGAAAGCTAGGCGTAGTC
TCCCCCCGGGGTGGACCGTTATTGACGATGAACCGAAGGCGAGGAAAAGC
AAGCAGATACGTAGCGGAGAGACCGGACGGCGCCGACGGCGAAAAACATG
CCCAAGGGGTGACCGAGAGCGATAAACGACGTTACCCGTGCCCTGTAGAA
AAAGGTTCGGCATCTTCTATTGCCGCGCTTCCGGCCGAAGAGTCCGTTTT
TGTTTACGGAGATGGCGGACGGAATTCGCTGAGAACGTGTTGTAGATAGC
CCCATCGCCGCGTGGCGCCAGGTAGACGCTCGCTGAGTAGGGGATAGGGG
AGGGGGTCGTAGTGGTGGTATCGCTGTAGTCAGCAGCGTCTCGCGGCGTG
CGCATGGGATGGCGGCGTCGATGGCCAAGTGTGGGAGAAGCGGGGGAGGG
AGCGAGAGAGCCAGAGGTCGGCTGGACACAATTTCAACCCTCCCCCCGGC
CTACACCGCCTTGTCATGAATGTCGTCTTGTTTCATTACCGCCCACGGTG
AACTTGTAGCCAACAGTTGGTCGGGTCTCTTATACACGGGGCGGGCCGGC
TCAAGTTTGACATCAGTCGCCCAATGTTTGGTTGCGTTGGCGATGATGTA
GGATAGGAATTTGCGCGATGTTGAAGTGAACAGGAAGGGCTTGGCACACC
CGCAGCTCATGTGCACGACCCACTACACCGTGGCGGTTACCACGAACCCA
GGTGCCTGGCGGCTTGGATAGCGGCGCCGGTACGGGAAGGCGGTTTGTTC
ATGCTTGCCCTAGATGTCATGGCCGTCGAGGCCGTCAGGTCTGTCTGTGC
TTCGTGATGTTTCTGTGGGACCAGACAACGGCGGTTCGGTTGTGGATGGG
TCTTGGATTGGTGTTGCGTCGACTCAGTCGTACGTCTTGAACGGTTGTGC
AGTAGGAGTGAACTCCCGATGGCTTGGTTTTAGGAACGGTACGACTCCCG
AGGTTGCTATGTAATGCTGGGTTATGTGCGCGCTCATCGCCGATGCTTTG
TAGCCCCCCTCTCGTCTTGCACTCACGTGTTTTTGTGAAATGTAAAAGTT
GTTTGCGTCGATTGATCGGTGCTTGGTGGCACCCAGCTTTGCTGTATAAG
GGAACCTCAAGGGTTGTCGTGGAATGAGAACCCACCGCTTCGTTAATGCT
AAATTCCGCACACGCACGCCACGGCG
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protein sequence of EsuBft98_3a-0001

>EsuBft98_3 ID=EsuBft98_3|Name=EsuBft98_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDA
DKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGGRGRGRGR
GGRDGGRGGGRGRGDGRGRGRGRGGRDGGRGGGGRGRGGGRGGGRGRGEG
RGAAGRGDGGGRGRG
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mRNA from alignment at Scaffold_510:256665..260922-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft98_3a-0001 ID=EsuBft98_3a-0001|Name=EsuBft98_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4258bp|location=Sequence derived from alignment at Scaffold_510:256665..260922- (Ectocarpus subulatus male Bft15b)
GTCCTGCAACGCCAACGAACATGGTGAGGGTGCTTAGTTGTCGGTCGTGC
AAGAGTGTGTCTCCCGTACGGGCGTCTTTTTTTACTGTTTGGCTCTTTGG
TCGTCAAATTTTCAACTTCTACTCAAGTTGCTCGACCCCCCTCCAAAAGA
TCGGCGCGTGCCGCCTTCGTTGCTCTTAGCAAGGCCATCGGGGCTAGTCT
ATACCTGTTGCTCGCGAGGTTCTGAAAGGTCCACTTACCTTTGCATCTTC
TCCAACTTCATTCAGTGTTTCAAGGTCCTTGTGATCACCTGCAGCAGTGT
ATGCTGATGTACCTGTTGCACAAACGAACAGCTATGTTACCTACGGGCAA
ACACAGCCGGCCTGTGAGCTAACACCAACAGTCGCTATACCCACGCCGTA
TGTAGTACAGCAGTAGTACATACCCCGTCGGCGTATCCACTCTCTCATGT
TTGCGCAATCGAATCCGATCGCTGAGCTCTATAGCGGTCGTTCCCCTAAT
ATTTCGCAATTCCTTTCCCTTTCCCCCCACTCTCTCCCTCGTTGTTACTT
GCCACTTTGGAACCACCGACACACCGCGCTGCAACGGCAGCTTCCGCTCT
CGTTGCTTAAGACTGCCCAGGGCCAGCCTATGCTGGTGGAGCTGAAGAAC
GGCGACACCTACAACGGGCGACTCGACAACTGCGACAGCTGGATGAACAT
CAAGCTGAAGGACGTTATTTTCACCTCAAGGGTAAGGGGGGACGACGGAC
GGACGGTGTTTGGCGCCAGCGGCGCGCCTTGCTGGTTTGTGTTGCCGTAA
GGACGGCACGGTGCCCCGAAGCGTGTACCGTCTCTTTCGAGCTCCATCCT
CTCTTAAACCTGCTTGCTTCATAGAAGCGCACGAGGACACGTCCCCGACG
GCTGAAAGCGGACAATAAGGAAAGGAACGGGAAAGACAGTGCAAGGAGGG
CTGTCGCATCCGAACCTGTGCCCCGCGGTGTCCTGTCGTTGTTTGCCCCT
TGTCGCCTCTCACAAAGCACTCTCAAAAGTCGCCAAGAACCTGCTTTTTC
CCTCTCAAGCGTCCTCTGCACTCTCATGTTTCTCTTGCACGTCGCGCAGC
AGTCTCAACTCGTCCCAATCACTTGCCGTGTCTTCGAACCTGACCTCTCC
TGCACTTTGCATAGCAGTGCCGACTCATTCCATCACTTGCCTTGTCTTGA
CCCTACACCTCGCGCCGCCCCACGCCTCTCCTCTTTATAATATGCATAGG
ACGCGGACAAGTTCGTGAAGATGGTGGAGGTGTACGTGCGCGGCAACAGC
ATCAAGTACGTCACGATTCCAGAGGAGGTGTTGGACATGGTGCAAGAAGA
AGACCTCTCCAAAGAGAGTGAGTTGACTAAAAAAATTACGTCTTCTGTTT
CGTGTTGCGTATTTGTTTCTTCAGCACTTGGGAACGTCGGCAGTTCGTGC
ACGCGACTGCCGGCCGTTTGTCCGCCGCAGCCGGAGCCATCTGTCTGTTC
CATTCTGTTTCGGCATTGCAAAGCAGTAGTGGCAGCAGCTTTGGACGAGC
TGGTTGTACAAGTAGAGCATGTTGAGGACTTGAGACACGGCCATCCGTTC
TTTTTACCTAGAGGCCCGATACTCAAACGGCAGCTGTCTCTGTCTGATTC
GATCCATGTATAACGTCGGTTGCGACGAGAGGCGCACATGTACTCCCACG
CGTGCTTCTTTTTCACACACGCCCACTCCTCGATCTCTCTGCGGGATTAT
TTTTGCAAAACCACGCCGTCACAGAGCGCGCCATGGGCGGGAGAGGTCGC
GGTCGCGGGCGAGGCGGACGGGACGGAGGCAGGGGCGGCGGCAGGGGGCG
GGGCGACGGGAGAGGTCGTGGCCGCGGGCGAGGCGGGCGGGACGGGGGCA
GGGGGGGGGGCGGAAGGGGGCGGGGCGGAGGCAGGGGTGGGGGCAGAGGG
AGAGGTGAGGGGAGAGGTGCCGCCGGGCGGGGAGACGGCGGCGGGCGAGG
TGAGTGAAGTTGGGCTTGATCTCTCGAGAGGGTGGTATGCGAGGGTGGGA
GAGACACTGTACATTTTCAGGGAAAATGGGAGGGAAAGTGTTACCGGGAG
CTGTACGTGGAGCATGTTTCCTGGCCTTGACATCGGTTCGTGTTTGAGGT
GCTACGGCGATTGCTGAAAGACATGTTGCATGAGGTTCGATACAGTCGCG
AGTGCGAGTACGTCTCTCGTTGGGTATTTGAAAAGTGCCCATGTTAGCTT
TAGTGTTATTTGGGCGGTGTTTTGCATAGAGGCGTGTCGGGACACGATGT
TGTGATGTCCGTGTCTGCTTATCAACTCCAAGGTTTACGGCAATTCGTTT
CTCAGTTCATTCGGAGAGAGAAGTATGTATTCCGCGATGGTGGGCAATAT
ATGCGGCAGTTTTGCCTCCATTTGTTGGCCTTGTTTGACCCCGATGGAGT
TCTAGACTAGTACAAGCAACACATTCACGCTGGTCTACTAGGAGGGCTTT
GCAGGGGATGCGCCACCCCTCTCGAGTGTACAAAACGTTCGACGACGCAT
CTATTGAAATTGTTGTGGTGGTCCTATTCCTAAGCCCCTTAACACGAAGG
GCCGCATCGGTAACACACCCTCCCCGTCACCCGCCCGCGGCAGCTATAGA
TGACGCTGCGCACTTTTCGCCGTGCGGGTGTGTGCTTTTGACAATGTGGC
GTCGACTAATACCGAGCGAGTGCCCACCTGCGAAATCACTCTCAGTTCTG
TACACGCCCGACAGGTTTGTTTGTACGAAAAACGAAAGAAACGCCTTGGG
GTGCTGTCGACAACGCGCGATCTCTTCCGCGGTGCTCCCCCGCCCGCGTG
GTTTTTGCCCATAGATAGCTGCTCACCCGGTTTTTGTCGCTCTCTCCTTT
CTTCGACGTTGACGATGGGGTGCGCTGACACTGCTGCAGGGCGGGGCTGA
AGACCCGCTCGTGCGGCGGGCGCGTGCCTCTCAGCGAAGCGGAGCAATGG
CAATTCGACGACGATGGCGGCCGGGGAGAACACGGCGGCCCTCGCGGCGG
CCAAAACAGGTCTCGGAAAGCTAGGCGTAGTCTCCCCCCGGGGTGGACCG
TTATTGACGATGAACCGAAGGCGAGGAAAAGCAAGCAGATACGTAGCGGA
GAGACCGGACGGCGCCGACGGCGAAAAACATGCCCAAGGGGTGACCGAGA
GCGATAAACGACGTTACCCGTGCCCTGTAGAAAAAGGTTCGGCATCTTCT
ATTGCCGCGCTTCCGGCCGAAGAGTCCGTTTTTGTTTACGGAGATGGCGG
ACGGAATTCGCTGAGAACGTGTTGTAGATAGCCCCATCGCCGCGTGGCGC
CAGGTAGACGCTCGCTGAGTAGGGGATAGGGGAGGGGGTCGTAGTGGTGG
TATCGCTGTAGTCAGCAGCGTCTCGCGGCGTGCGCATGGGATGGCGGCGT
CGATGGCCAAGTGTGGGAGAAGCGGGGGAGGGAGCGAGAGAGCCAGAGGT
CGGCTGGACACAATTTCAACCCTCCCCCCGGCCTACACCGCCTTGTCATG
AATGTCGTCTTGTTTCATTACCGCCCACGGTGAACTTGTAGCCAACAGTT
GGTCGGGTCTCTTATACACGGGGCGGGCCGGCTCAAGTTTGACATCAGTC
GCCCAATGTTTGGTTGCGTTGGCGATGATGTAGGATAGGAATTTGCGCGA
TGTTGAAGTGAACAGGAAGGGCTTGGCACACCCGCAGCTCATGTGCACGA
CCCACTACACCGTGGCGGTTACCACGAACCCAGGTGCCTGGCGGCTTGGA
TAGCGGCGCCGGTACGGGAAGGCGGTTTGTTCATGCTTGCCCTAGATGTC
ATGGCCGTCGAGGCCGTCAGGTCTGTCTGTGCTTCGTGATGTTTCTGTGG
GACCAGACAACGGCGGTTCGGTTGTGGATGGGTCTTGGATTGGTGTTGCG
TCGACTCAGTCGTACGTCTTGAACGGTTGTGCAGTAGGAGTGAACTCCCG
ATGGCTTGGTTTTAGGAACGGTACGACTCCCGAGGTTGCTATGTAATGCT
GGGTTATGTGCGCGCTCATCGCCGATGCTTTGTAGCCCCCCTCTCGTCTT
GCACTCACGTGTTTTTGTGAAATGTAAAAGTTGTTTGCGTCGATTGATCG
GTGCTTGGTGGCACCCAGCTTTGCTGTATAAGGGAACCTCAAGGGTTGTC
GTGGAATGAGAACCCACCGCTTCGTTAATGCTAAATTCCGCACACGCACG
CCACGGCG
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Coding sequence (CDS) from alignment at Scaffold_510:256665..260922-

>EsuBft98_3a-0001 ID=EsuBft98_3a-0001|Name=EsuBft98_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_510:256665..260922- (Ectocarpus subulatus male Bft15b)
ATGCTTCCGCTCTCGTTGCTTAAGACTGCCCAGGGCCAGCCTATGCTGGT
GGAGCTGAAGAACGGCGACACCTACAACGGGCGACTCGACAACTGCGACA
GCTGGATGAACATCAAGCTGAAGGACGTTATTTTCACCTCAAGGGACGCG
GACAAGTTCGTGAAGATGGTGGAGGTGTACGTGCGCGGCAACAGCATCAA
GTACGTCACGATTCCAGAGGAGGTGTTGGACATGGTGCAAGAAGAAGACC
TCTCCAAAGAGAAGCGCGCCATGGGCGGGAGAGGTCGCGGTCGCGGGCGA
GGCGGACGGGACGGAGGCAGGGGCGGCGGCAGGGGGCGGGGCGACGGGAG
AGGTCGTGGCCGCGGGCGAGGCGGGCGGGACGGGGGCAGGGGGGGGGGCG
GAAGGGGGCGGGGCGGAGGCAGGGGTGGGGGCAGAGGGAGAGGTGAGGGG
AGAGGTGCCGCCGGGCGGGGAGACGGCGGCGGGCGAGGGCGGGGCTGA
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