EsuBft98_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft98_12a-0001
Unique NameEsuBft98_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:157357..159477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8I7
ProteomeIdEsuBft98_12
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR003323
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteubiquitin thioesterase zranb1-b os:xenopus laevis gn:zranb1-b pe:2 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length930
Hectar predicted targeting categorysignal peptide
Evalue4.31e-144
EggNOG OGsKOG4345@1|root,KOG4345@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameZRANB1
KEGG koko:K11860,ko:K11862
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
EC3.4.19.12
Descriptionprotein deubiquitination involved in ubiquitin-dependent protein catabolic process
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0009966
GO0031227
GO0004843
GO0016579
GO0005515
GO0048523
GO0006508
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft98_12aEsuBft98_12aEctocarpus subulatus male Bft15bgeneScaffold_510 157357..159477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_12a-0001EsuBft98_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 157357..159477 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_12a-0001-exonagat-exon-75142Ectocarpus subulatus male Bft15bexonScaffold_510 157357..157534 -
EsuBft98_12a-0001-exonagat-exon-75147Ectocarpus subulatus male Bft15bexonScaffold_510 158025..158200 -
EsuBft98_12a-0001-exonagat-exon-75144Ectocarpus subulatus male Bft15bexonScaffold_510 158380..158569 -
EsuBft98_12a-0001-exonagat-exon-75146Ectocarpus subulatus male Bft15bexonScaffold_510 158819..158962 -
EsuBft98_12a-0001-exonagat-exon-75145Ectocarpus subulatus male Bft15bexonScaffold_510 159062..159185 -
EsuBft98_12a-0001-exonEsuBft98_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 159259..159298 -
EsuBft98_12a-0001-exonagat-exon-75143Ectocarpus subulatus male Bft15bexonScaffold_510 159400..159477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_12a-0001-cdsEsuBft98_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 157357..157534 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft98_12a-0001 ID=EsuBft98_12a-0001|Name=EsuBft98_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_510:157357..159477- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAAGCAAAGGGGGCGAAACCGCCGACCAGCCCCCTGATCTTACA
GCTGCTGATCCCTAAAGGGATGGCACAGCCTGCTTCGGCCGTGGGGTATA
TCCTCAGCCATAAGGTAGAGCACCTTCAACTGCCTGTGGTGGACGCTGGA
ACCCGCGAGTCCTTGCCGCTGGAAGAGGAGGTCAACAGACGGCTGTTGAA
GCAAATCGATTGGGCGCCGCCCGGCTCTGAGCCTCTAACGAGCCCCTCGC
TCCGGGCCGACCCGCGCGCGCACAGAGGGGTCCGCCCTTTGAAGTCAAGA
CTGTTCGCGATGAGGGCAAAGGGGACGGGAACTGTCTACCGCACGCTGTT
TCACTGTCGCTGTGGGGCCATGGAGACGACACGCTGGAGGCCAACGCCTC
GTCAGTATCTCCTGTATTCCCTCCGTTCGCTGTACCAGGTACTACGGTCG
TTGTTGAAGGAAGTCTTCCTGGACAGGCCCAGCGAGGCTATCTTGTTTTC
CGTTTGGTGTAAGGAGCAAAAGCGGGTAAACGAGGCGACCGGAGGAAGCG
CCTCCTTCGAAATGGCAGCCGGCGAGTTGCGGGCGGAATGGCGCATGGTT
ATGGAGGCAGTCAAGACGCCGTCAGCCCACCTCTCCTCTTTCCACGTCTT
CGTGCTCGCCCACGTCCTACGACGTCCGATAGTGGTCTACGGGAAAAATC
ATGTATACGGTGCCAACAACAGTGAGGCGTTTGTTCCGTCTGACATGCCC
GGGAACTACCTCCCGACTTTGGAGCACCAAGACAAGTGCTACAAGTCAGC
GATTGCGGTGGCTTACACCTGCCCCGCTGTCGGTAGGGCTGGCCACTTTT
CTCCTCTCGTCGGGATGTCCAAGCAGCTGAAATATATTCCCTCGGTAGAC
GAGCATGGAAAAAATTTGCGGGTTAGGTAA
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protein sequence of EsuBft98_12a-0001

>EsuBft98_12 ID=EsuBft98_12|Name=EsuBft98_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=309bp
MKKAKGAKPPTSPLILQLLIPKGMAQPASAVGYILSHKVEHLQLPVVDAG
TRESLPLEEEVNRRLLKQIDWAPPGSEPLTSPSLRADPRAHRGVRPLKSR
LFAMRAKGTGTVYRTLFHCRCGAMETTRWRPTPRQYLLYSLRSLYQVLRS
LLKEVFLDRPSEAILFSVWCKEQKRVNEATGGSASFEMAAGELRAEWRMV
MEAVKTPSAHLSSFHVFVLAHVLRRPIVVYGKNHVYGANNSEAFVPSDMP
GNYLPTLEHQDKCYKSAIAVAYTCPAVGRAGHFSPLVGMSKQLKYIPSVD
EHGKNLRVR
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mRNA from alignment at Scaffold_510:157357..159477-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft98_12a-0001 ID=EsuBft98_12a-0001|Name=EsuBft98_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2121bp|location=Sequence derived from alignment at Scaffold_510:157357..159477- (Ectocarpus subulatus male Bft15b)
ATGAAGAAAGCAAAGGGGGCGAAACCGCCGACCAGCCCCCTGATCTTACA
GCTGCTGATCCCTAAAGGGATGGCACAGGTGAGTCTGACGATCGAGATGT
TTTCTCACGTAGCACTACTTCAATCCTCATCAAACCCAGAGGTACACGGC
CCGCTCCGTCGTGACAAAGCCCATCTCAGCCTGCTTCGGCCGTGGGGTAT
ATCCTCAGCCATAAGGTAGGTGTGCCGCAGAATACGTCCTTGATTTTTTG
TGCGCCCCTGTTTCGTTTTCGGCCATACGTTTGACATCGCAGAGCACCTT
CAACTGCCTGTGGTGGACGCTGGAACCCGCGAGTCCTTGCCGCTGGAAGA
GGAGGTCAACAGACGGCTGTTGAAGCAAATCGATTGGGCGCCGCCCGGCT
CTGAGCCTCTAACGAGGTGCGGGTGTTTTCCGTGCCCGTGTTCGGCTTGA
CTCGGTGCTCGCTAGTTGTGGCGCTCGCAAGAGAGGAACACCGCTTTGTT
TTGGCCCAACCTTAGCCCCTCGCTCCGGGCCGACCCGCGCGCGCACAGAG
GGGTCCGCCCTTTGAAGTCAAGACTGTTCGCGATGAGGGCAAAGGGGACG
GGAACTGTCTACCGCACGCTGTTTCACTGTCGCTGTGGGGCCATGGAGAC
GACACGCTGGTGAGCGGTTTGTTCATCGAGTTGTGCGGAGAGAGAATGGG
GAACACTCATCTGTTGCTTGTCTCGGTTATGGTGACTACAGTATGTACGC
CCACCTTCCGAGAGACAAAAGTTGTTGTCACCTTTCCTCATTCTACTCTG
CAAGCCTACTCTCGCTCGTTATGTCACGCCATGGCTTCCTGTGCATGGCT
TCCTATGCCAGGAAGCTTGTTGTGGGCCCGCGTCTTTGCGACTGTGCGTG
CTTTGTAGGAGGCCAACGCCTCGTCAGTATCTCCTGTATTCCCTCCGTTC
GCTGTACCAGGTACTACGGTCGTTGTTGAAGGAAGTCTTCCTGGACAGGC
CCAGCGAGGCTATCTTGTTTTCCGTTTGGTGTAAGGAGCAAAAGCGGGTA
AACGAGGCGACCGGAGGAAGCGCCTCCTTCGAAATGGCAGCCGGCGAGGT
TAGCCACTACCCTTTCCGGAGAAATGCCAATCGATCATATTGGGGGGTGT
TACCATTGTGAGGAGGTGGCGTGTCAGCCAGTAGACAGGAACCCTCCACG
TTAAACTTGGTTTTTACAAACCAAGCTGTCTCCCTTACGCTAACCGAACA
CGTTGCCGCTACCCTTTCCTCGAGCAGTTGCGGGCGGAATGGCGCATGGT
TATGGAGGCAGTCAAGACGCCGTCAGCCCACCTCTCCTCTTTCCACGTCT
TCGTGCTCGCCCACGTCCTACGACGTCCGATAGTGGTCTACGGGAAAAAT
CATGTATACGGTGCCAACAACAGTGAGGCGTTTGTTCCGTCTGACATGCC
CGGGTAGGTGAGAGATAGTTGACAATCCCGCCATTTGGTTCGAGCGGGGA
GGAGAGTGAGAGGTGAAGGAAGACAACACCCCTTGCCGCGTGGCCGGGTG
GAGGAAATAACAACACTTCGCTTGCCCAGGAGGAGGAACTGCGGATCTCG
CGCCTCTTCACAAGAAGTCTCGGCACGGAACATTGTATCCTCCAAGCGTG
AGCGTGCGCGGGGGTGTACGAAAAACAAGCGTTTATTTTGTCTTGTTCGT
TTATGCCTCTTCATTGAATGTCAACCTCGCAACGCTCACCGCAGGTCAGT
GTTCCGTGCGAGAAACAGGCGCGAGGTCCGCGGTTCCTTGCCGGCACGAA
AACCGAAGAAAATTGTAACCGACACCCAAAGGTGCGGGACCTGGTTGAAT
GCCAATAGATCGATGTACATCTGCCCCCCTCCTTCAAACAACACTTTTGA
GCATCAAGTTTCCTGCCCCCGACCTCCACATCAAAACTGGCAGGAACTAC
CTCCCGACTTTGGAGCACCAAGACAAGTGCTACAAGTCAGCGATTGCGGT
GGCTTACACCTGCCCCGCTGTCGGTAGGGCTGGCCACTTTTCTCCTCTCG
TCGGGATGTCCAAGCAGCTGAAATATATTCCCTCGGTAGACGAGCATGGA
AAAAATTTGCGGGTTAGGTAA
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Coding sequence (CDS) from alignment at Scaffold_510:157357..159477-

>EsuBft98_12a-0001 ID=EsuBft98_12a-0001|Name=EsuBft98_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=930bp|location=Sequence derived from alignment at Scaffold_510:157357..159477- (Ectocarpus subulatus male Bft15b)
ATGAAGAAAGCAAAGGGGGCGAAACCGCCGACCAGCCCCCTGATCTTACA
GCTGCTGATCCCTAAAGGGATGGCACAGCCTGCTTCGGCCGTGGGGTATA
TCCTCAGCCATAAGGTAGAGCACCTTCAACTGCCTGTGGTGGACGCTGGA
ACCCGCGAGTCCTTGCCGCTGGAAGAGGAGGTCAACAGACGGCTGTTGAA
GCAAATCGATTGGGCGCCGCCCGGCTCTGAGCCTCTAACGAGCCCCTCGC
TCCGGGCCGACCCGCGCGCGCACAGAGGGGTCCGCCCTTTGAAGTCAAGA
CTGTTCGCGATGAGGGCAAAGGGGACGGGAACTGTCTACCGCACGCTGTT
TCACTGTCGCTGTGGGGCCATGGAGACGACACGCTGGAGGCCAACGCCTC
GTCAGTATCTCCTGTATTCCCTCCGTTCGCTGTACCAGGTACTACGGTCG
TTGTTGAAGGAAGTCTTCCTGGACAGGCCCAGCGAGGCTATCTTGTTTTC
CGTTTGGTGTAAGGAGCAAAAGCGGGTAAACGAGGCGACCGGAGGAAGCG
CCTCCTTCGAAATGGCAGCCGGCGAGTTGCGGGCGGAATGGCGCATGGTT
ATGGAGGCAGTCAAGACGCCGTCAGCCCACCTCTCCTCTTTCCACGTCTT
CGTGCTCGCCCACGTCCTACGACGTCCGATAGTGGTCTACGGGAAAAATC
ATGTATACGGTGCCAACAACAGTGAGGCGTTTGTTCCGTCTGACATGCCC
GGGAACTACCTCCCGACTTTGGAGCACCAAGACAAGTGCTACAAGTCAGC
GATTGCGGTGGCTTACACCTGCCCCGCTGTCGGTAGGGCTGGCCACTTTT
CTCCTCTCGTCGGGATGTCCAAGCAGCTGAAATATATTCCCTCGGTAGAC
GAGCATGGAAAAAATTTGCGGGTTAGGTAA
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