EsuBft988_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft988_6a-0001
Unique Name	EsuBft988_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_349	contig	Scaffold_349:77434..79870 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft988_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	243
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft988_6a	EsuBft988_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_349 77434..79870 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft988_6a-0001-exon	EsuBft988_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_349 77434..79870 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft988_6a-0001-exon	agat-three_prime_utr-23817	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_349 77434..79720 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft988_6a-0001-cds	EsuBft988_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_349 79721..79870 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft988_6a-0001	EsuBft988_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_349 79721..79870 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_349:77434..79870-
coding sequence from alignment at Scaffold_349:77434..79870-

spliced messenger RNA

>EsuBft988_6a-0001 ID=EsuBft988_6a-0001|Name=EsuBft988_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2437bp|location=Sequence derived from alignment at Scaffold_349:77434..79870- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGTCACGAAGAACTAGTCCGATAGTTC
TCCGTCGTCCATGCGCACCCGGGCCCGTATTCCATCGTGGAATTGGCGGA
TGACTTCGATCAGCTTCGCGGGAATCCCGGCCCTAGCCAGCACGTTCCAT
AGCATCCCTCGGTCCACCGAATCATACCCCTTCTTCAAGTCGACGAAGCA
CATGTAGAGCGGTATTTTGTTTCTCCGCCCCAGCTCCTGGAGGCGGCGCA
CGACGAACAGCATGTCGACGGTGGATCGCCCGGGTCGAAATCCGCACTGT
TCCTCCGGGAGGATGTTGTTGGCTTCGCAGAAGGCGCTTAGACGGTTGGT
GATGATCTTGATGGGGACCTTGCCTACGTGAGATAGTAGCGAAATCCCCC
TGTAGTTGTTACAGTTGGACCGGTCACCCTTCTTGTACAGCACCTTGATG
GTTGCATCCTTCCACTCTCGCGGAACATCTCCTCCGTTCCACACCTTGAC
GAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGATCT
TGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTCTTG
AGGCCTTTCGTCGCCCGTGCCACCTCCTCGAGTTCGGCACATCTCCCAAC
CGTTGAGTGTCACGTGTCGCTGGCTGCTGCGTCACTCGTTCGATTGTGTG
TGGGTTCAGGGTGGGGGATTTGGTGTTGAGCAGGGTACTGAAGAATCTCG
CCCACCGCTGGAGGATCTCGTCCCTGTTCCGGAGCAACACGCCGTTCTCA
TCCGCGACGAACTGCTGTCCCCCCGCTTGTCTCCCGCTGAGGCCCACTGA
TCTCTTGAGGTGTTGGTACAGTCCTCGCATGTCGCGATCTTCGTAGATTT
CCTCGAGCTCAGTCACATATCCGTCCAGGTGGGCATAAATGCCCGTTTCG
ACTGCTGTAGCCACTCCCTCACACGCTGCTTTGAGAACCCTCCACGTCGC
TGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGACGTTTGGTAA
GGGCCTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCACACCACTCCTGC
GTGCGGCGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGCTGCGTCGAG
GAGAGCATTGGTAAAGTCGGTCGCCAATTTCGCGGCGGTGGTTGTTCGCT
CGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGCACAC
CGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTTCTGTTTCGG
TTTAGTCCGGACTGCACGGTTGGGGGCAAGCCTGCCACCGAGGTTGACGG
TGGCTACTACCATATTGTAGTCTGAGTCTGTTTTGACTGGGCGAACCGGC
TGGGGGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCCTTGT
CAGGATGTAGTCAAGGCGCTGGCTATCGTTTCCCGACACACCGTTGTATG
TGTGCCATATTCCGCCCTTGCGTGTCTCAAAGAACGTGTTCGCGGGAGGT
AGCCTGTTTTGCGTTGCAAAGTTCAACAACAGCATGCCATTGTCGTTGAG
CTCATCACGCCCGTACATTCCTATCACCCTTTCGTCCCATCCGTCCAACC
TATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTCTTTG
GAAGGGATCCTCCGCACGAGACTGTCAAGTTTTCCCCAGAACACGCGCTT
GCTGTCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAGTTGA
CCGCTCCACGGTGGCCTGCCAACAGAAACCTCATGGCCATAAGGCGTTCG
TCAATAAACTCCGTGGTGAACGTGGATGTCTTGCACAGTGACTCTTTGAC
GACTATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCAGAACA
CCCAGACACCCGCTGCTGCAAATTCCGTTCGACCTGCCCTTCGTGTCTCC
TGCATTCCTGCCACCGATACGTCTTGTCTCGATGCCTCGTGTAGAACGCT
GTAAGCTCGCCCGTATCCATTAGCCCCGTTTACAGCCAAAGTCCGCACAT
TCCAGGTTGCTACCCTAAGAAGTTGACCCTGCTGTCTCTTTCGCGCGGCG
CGCGCTGCTCTCTTAGCTAGCCTACGCGCCGCCCGACCCCTCCTTTTCTT
CCATCTTACCCTCTTTTTCTTGTTTTTTGCTATTTTCTTGCGAACACTCG
GGCAAACGTGATAGTTACCCCGGTTCTTGCCTTGAAT

protein sequence of EsuBft988_6a-0001

>EsuBft988_6 ID=EsuBft988_6|Name=EsuBft988_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_349:77434..79870-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft988_6a-0001 ID=EsuBft988_6a-0001|Name=EsuBft988_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2437bp|location=Sequence derived from alignment at Scaffold_349:77434..79870- (Ectocarpus subulatus male Bft15b)
ATGGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGTCACGAAGAACTAGTCCGATAGTTC
TCCGTCGTCCATGCGCACCCGGGCCCGTATTCCATCGTGGAATTGGCGGA
TGACTTCGATCAGCTTCGCGGGAATCCCGGCCCTAGCCAGCACGTTCCAT
AGCATCCCTCGGTCCACCGAATCATACCCCTTCTTCAAGTCGACGAAGCA
CATGTAGAGCGGTATTTTGTTTCTCCGCCCCAGCTCCTGGAGGCGGCGCA
CGACGAACAGCATGTCGACGGTGGATCGCCCGGGTCGAAATCCGCACTGT
TCCTCCGGGAGGATGTTGTTGGCTTCGCAGAAGGCGCTTAGACGGTTGGT
GATGATCTTGATGGGGACCTTGCCTACGTGAGATAGTAGCGAAATCCCCC
TGTAGTTGTTACAGTTGGACCGGTCACCCTTCTTGTACAGCACCTTGATG
GTTGCATCCTTCCACTCTCGCGGAACATCTCCTCCGTTCCACACCTTGAC
GAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGATCT
TGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTCTTG
AGGCCTTTCGTCGCCCGTGCCACCTCCTCGAGTTCGGCACATCTCCCAAC
CGTTGAGTGTCACGTGTCGCTGGCTGCTGCGTCACTCGTTCGATTGTGTG
TGGGTTCAGGGTGGGGGATTTGGTGTTGAGCAGGGTACTGAAGAATCTCG
CCCACCGCTGGAGGATCTCGTCCCTGTTCCGGAGCAACACGCCGTTCTCA
TCCGCGACGAACTGCTGTCCCCCCGCTTGTCTCCCGCTGAGGCCCACTGA
TCTCTTGAGGTGTTGGTACAGTCCTCGCATGTCGCGATCTTCGTAGATTT
CCTCGAGCTCAGTCACATATCCGTCCAGGTGGGCATAAATGCCCGTTTCG
ACTGCTGTAGCCACTCCCTCACACGCTGCTTTGAGAACCCTCCACGTCGC
TGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGACGTTTGGTAA
GGGCCTGCTCCAGCGCTGCTCGCGTCTCTGGGGTCTCACACCACTCCTGC
GTGCGGCGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGCTGCGTCGAG
GAGAGCATTGGTAAAGTCGGTCGCCAATTTCGCGGCGGTGGTTGTTCGCT
CGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGCACAC
CGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTTCTGTTTCGG
TTTAGTCCGGACTGCACGGTTGGGGGCAAGCCTGCCACCGAGGTTGACGG
TGGCTACTACCATATTGTAGTCTGAGTCTGTTTTGACTGGGCGAACCGGC
TGGGGGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCCTTGT
CAGGATGTAGTCAAGGCGCTGGCTATCGTTTCCCGACACACCGTTGTATG
TGTGCCATATTCCGCCCTTGCGTGTCTCAAAGAACGTGTTCGCGGGAGGT
AGCCTGTTTTGCGTTGCAAAGTTCAACAACAGCATGCCATTGTCGTTGAG
CTCATCACGCCCGTACATTCCTATCACCCTTTCGTCCCATCCGTCCAACC
TATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTCTTTG
GAAGGGATCCTCCGCACGAGACTGTCAAGTTTTCCCCAGAACACGCGCTT
GCTGTCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAGTTGA
CCGCTCCACGGTGGCCTGCCAACAGAAACCTCATGGCCATAAGGCGTTCG
TCAATAAACTCCGTGGTGAACGTGGATGTCTTGCACAGTGACTCTTTGAC
GACTATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCAGAACA
CCCAGACACCCGCTGCTGCAAATTCCGTTCGACCTGCCCTTCGTGTCTCC
TGCATTCCTGCCACCGATACGTCTTGTCTCGATGCCTCGTGTAGAACGCT
GTAAGCTCGCCCGTATCCATTAGCCCCGTTTACAGCCAAAGTCCGCACAT
TCCAGGTTGCTACCCTAAGAAGTTGACCCTGCTGTCTCTTTCGCGCGGCG
CGCGCTGCTCTCTTAGCTAGCCTACGCGCCGCCCGACCCCTCCTTTTCTT
CCATCTTACCCTCTTTTTCTTGTTTTTTGCTATTTTCTTGCGAACACTCG
GGCAAACGTGATAGTTACCCCGGTTCTTGCCTTGAAT

Coding sequence (CDS) from alignment at Scaffold_349:77434..79870-

>EsuBft988_6a-0001 ID=EsuBft988_6a-0001|Name=EsuBft988_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_349:77434..79870- (Ectocarpus subulatus male Bft15b)
ATGGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN