EsuBft988_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft988_5a-0001
Unique NameEsuBft988_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_349contigScaffold_349:82684..87010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXU5
ProteomeIdEsuBft988_5
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length119
Hectar predicted targeting categoryother localisation
Evalue8.87e-124
EggNOG OGs2F00Z@1|root,2T195@2759|Eukaryota
Ec32 ortholog descriptionHSP40/DnaJ peptide-binding
Ec32 orthologEc-23_001480.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDnaJ C terminal domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft988_5aEsuBft988_5aEctocarpus subulatus male Bft15bgeneScaffold_349 82684..87010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_5a-0001EsuBft988_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_349 82712..86592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_5a-0001-exonagat-exon-108904Ectocarpus subulatus male Bft15bexonScaffold_349 82684..82957 +
EsuBft988_5a-0001-exonEsuBft988_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_349 83772..83888 +
EsuBft988_5a-0001-exonagat-exon-108903Ectocarpus subulatus male Bft15bexonScaffold_349 85182..85362 +
EsuBft988_5a-0001-exonagat-exon-108905Ectocarpus subulatus male Bft15bexonScaffold_349 86153..86245 +
EsuBft988_5a-0001-exonagat-exon-108902Ectocarpus subulatus male Bft15bexonScaffold_349 86486..87010 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_5a-0001-exonagat-five_prime_utr-15523Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_349 82684..82711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_5a-0001-cdsEsuBft988_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_349 82712..82957 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_5a-0001-exonagat-three_prime_utr-23816Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_349 86593..87010 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft988_5a-0001 ID=EsuBft988_5a-0001|Name=EsuBft988_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1190bp|location=Sequence derived from alignment at Scaffold_349:82684..87010+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTCTTCTCCACGGCGTTCTACGCGAAAATGCGGGAACAGGCAGCAGCCG
CGGGAGGGGCGGGTGTGGCGGGGGGGGCGTACCGGCCGGGGGCGGGGGCG
GCGGCGGGGGGGGGTCCGTTCGAAGGGGTCAGAGTGAACCTTTTCGACAT
ATTTCGGTTCAGTCCGGGGAACAGGGAGAACCTCGGCGTCCCGAAGGCAC
GGTGGCGGCAGATCGTTGTCAAGGTGGAGGTTTCGCTAGAGGAGCTGCTG
TCGGGGATTGTCAAGGAGATAAGCATTGGCGACTCTATCATTGAGCGCTA
CAAGCAGGCGGCTCGTACCGGGCTGCTGTCGGAGGTTTTGCAGGAGGGGG
CAGCTGTGTTCGGAGCCCTGCTGATCAAGTGCCCATTACCCGTATCAGCG
GTGGCGTTCGCGGCGTACGTCCACCTCAAGCTCCCGAGGGTGCCGCAGGG
CGCCTTCAGGGTGCCGATTCTGCCGGGGTACCGTAGAGGGACAAAGATTA
CGTTTAGCACGCCGGACGGGGTGGACGTGACCTTCGAACTGGTCGAGAAG
CAAAGCCAGTTTCGTCGCTCAGGTGACGACCTGTTCGTCATGCTGCGGCT
TTCTCCGAAGATGGTGAAGCGAGGGTGCGTCGTCAAGGTCCCTACCCTCG
ACAAGGGAACGGCAAATTTCGATGCGGCTGAAACGGAGGGAGGCCAGGGA
CGGCTACGAGCGTCGCTTGCCAGGGCTGGGCATGCCTCGTCGCAACGACG
GCGGGGAGGACGGCAGCAGTAACCGTGGAGACCTGATCGTGCACTTTATG
GTGCCACCGGAGGAAGATTAGTCAGCAGTTGCACATGCAGCCTGCTTTTC
TTCCTATCCCGCTCCATTTCTACAGGGAACTGCTGGTTTGGGGGCGGCGT
GACGTTTCTGCTAGATGTCGCGCCGTGCACTCGTTCATGTATGAAGCCTC
CGTTTTTTCTGGGTGGATCCTCATTAGACCATGCCATGCGTACCTGGCAC
CACCACGCAACACTTCCGGCCACAGCTATTATTTGAGGAGGGGCATCGAA
ACATTGTTGAGAGTGATAGGGAGAGGTAGCGGTAGGAGCTTTTGTATCTC
AGCGAAGAAACGCTGAAACGGCGCATAAACTCCCGAACAACACAGGGCTG
TGTGCAGATCACCTATATGACCCACGCACATCTAGTGAGC
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protein sequence of EsuBft988_5a-0001

>EsuBft988_5 ID=EsuBft988_5|Name=EsuBft988_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MREQAAAAGGAGVAGGAYRPGAGAAAGGGPFEGVRVNLFDIFRFSPGNRE
NLGVPKARWRQIVVKVEVSLEELLSGIVKEISIGDSIIERYKQAARTGLL
SEVLQEGAAVFGALLIKCPLPVSAVAFAAYVHLKLPRVPQGAFRVPILPG
YRRGTKITFSTPDGVDVTFELVEKQSQFRRSGDDLFVMLRLSPKMVKRGC
VVKVPTLDKGTANFDAAETEGGQGRLRASLARAGHASSQRRRGGRQQ
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mRNA from alignment at Scaffold_349:82684..87010+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft988_5a-0001 ID=EsuBft988_5a-0001|Name=EsuBft988_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4327bp|location=Sequence derived from alignment at Scaffold_349:82684..87010+ (Ectocarpus subulatus male Bft15b)
TTTCTTCTCCACGGCGTTCTACGCGAAAATGCGGGAACAGGCAGCAGCCG
CGGGAGGGGCGGGTGTGGCGGGGGGGGCGTACCGGCCGGGGGCGGGGGCG
GCGGCGGGGGGGGGTCCGTTCGAAGGGGTCAGAGTGAACCTTTTCGACAT
ATTTCGGTTCAGTCCGGGGAACAGGGAGAACCTCGGCGTCCCGAAGGCAC
GGTGGCGGCAGATCGTTGTCAAGGTGGAGGTTTCGCTAGAGGAGCTGCTG
TCGGGGATTGTCAAGGAGATAAGCGTGAGTCCTGTGGGAAGCTAGCTCGG
CAGTTACATGTCCCGGTGATGACAGCTTGCAGCGGTAGGGCGTCGGGCTG
AACAACTGCTTTGGGAAACTTTCCGCATGTGTTCGCTGAGAGGCAGCGAA
CCCGCAGAAGGGATACATCTTGGCTACAGTAGGGGGCCCTCAATAGTGTC
GGTATGTGCCAGAGCAGAATACCGGCACTATTCAGGATCGAGGAATATAT
AGGTTTTACTATACCAGCTCAAATCCGTGTCAGTATATTTTACCGGCACT
ATACGGGGCACCGGCATGATTCAATCGGCAATAGTGAGGGCCCCCTACTG
TACTGTTTTCATGGACACATAAATATCCCCGACAACATTCTTCCGCGCAC
CGCGCGACATTGCGTGTGTGGGTCTTGTGCTTCCTAAAGAGTGGGGATTG
AGAGGTTGCAACAGTGTCACCGGAGAGAGGCAATGTATAGATGTACGAAG
TATGAGAAACGGTGCCGACGGAATCGAACGACCTCGGCCATCGAAGAGTG
GAACAAAGACAGGCAGACCAGACGACACATAGGCAGGCAGGCAGGCAGGC
AGGCAGACGGAGAGACACGGGGGAATAAGCATGGTCGCAAGGGTAGAGAG
CAAGGCGCCGTTTAAGTCGTGCTTCAGAGAGAGCGGAGCGAGCTTTTTTT
TGCCTAGACGTGGATGAAAAATGTAACGGCTCAGAACCTTTTGTGGTAGT
GTACCTCAAACCGCGAATGAGAGAGGAAGATCAATCAGAAAACTGTTTCC
TCCTTCGTTCGGACGTGCCCGGTGTCTTCGTGCGTCAGATTGGCGACTCT
ATCATTGAGCGCTACAAGCAGGCGGCTCGTACCGGGCTGCTGTCGGAGGT
TTTGCAGGAGGGGGCAGCTGTGTTCGGAGCCCTGCTGATCAAGTGCCCAT
TACCCGTAAGGCAATTACCAATTTCCGTTGCCGTTGTTTGCTGTTGTTAT
GGCTGTGTCTTTCGTGTTTCCGTCCAACGATGATGGGTTGTTGCTATGCT
TTGCCGTCGTCGAGCAGCGTGTACCTGCGGTATACCCCTCCCGCCGACCG
CAGCAGTAGCGTAGGGGACTAAAGATACCACACTCCCCGGACCGACAAGT
AAGCAGAACCTTGGACGAATATACCGAACGAGACGAATACCGCTAAGCTC
TCGACGGGACGGTTCCCAAACCGCCATTTTTCCATCGCCCCCACTCTTTC
TGCTATAATAGCGATAAGAGCTTTGAAAATCGGTCCTGGGGGTTGTGGTG
GTGTCCTACGTAGCCTCCGATGCTTTGCGTGATTCCGATCCACGTGAATG
ACTCCAAAGCGCGAAACTGGTTCGAGGCTGGACTTTCTGGGCTGGCGCGT
TTTGGGGGAGCAGCGTTTATTCGATGCCCCCACTGGCCGATGTGCCTGGC
GTTTTGTGGCGAGGAACATACCGTAGGTGACGTAAGGTGGCACACCCCCT
GGGGCCGATTTTCAAGGCTCGATTACTCCACGAAGAGGATGTAAAGTCAA
GGGATACGTGTTCGGAAGTTCTCGACGAGTCTGTTCCAACGCCGCCGTTT
TCGATGCCGCCATACTGCTTGCGTGGGAAAAACCGATCGTTGAAAATCGC
TCCAGGGGGTGTGATACCTTATGTCACGTACGGTTTACGTTTTCAGGAAA
TACAAGCCTGGTAGAGATCCCTTCGCACCGGTGTGTCGACGTCGGCAGGT
TGAAGAGTTTTTCATCGACCCCTTCCCATTCCCCTCGGAAGATAGTTGGA
GAGGAGTGCTTCACCCTGCCAGTTTCCCAACCGCAGTCCCCCCCCCCCCC
CCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCTGCG
CGCGCAAGTCTTTCTCTGATCGCAGGACATTCTCTTCCCGATTGCTGTAT
AGAAACCGAAAGGTTCTCATGTTTATCATATTGAGGAGGCCGCGGCGCTT
CGTATGATGAATCCTCGCGCCGCTCGCCTCGCACGCCAGATGCCATCGGT
GGCGTGAATATACAGAATAGTGATCGTTAACGTAAACAAGGCTATTGCCA
TGGATACAACGAAATACACAACCTCGCGCCACTCCCCTCTCACGCCAGGT
ATCAGCGGTGGCGTTCGCGGCGTACGTCCACCTCAAGCTCCCGAGGGTGC
CGCAGGGCGCCTTCAGGGTGCCGATTCTGCCGGGGTACCGTAGAGGGACA
AAGATTACGTTTAGCACGCCGGACGGGGTGGACGTGACCTTCGAACTGGT
CGAGAAGCAAAGCCAGTTTCGTCGCTCAGGTACTGCTGTGTAACGGCAAC
AAACAAACGCATGTCGAGGGGGCACTGTACCATGCACGATTTCGTAGTAT
ACCGCTACCATAGTAACGGCATACCGCACGTTGGATACGTAAGATACCAC
ACACCCCGGACCGCCCGCCTCCTTCCCTTTTGTTGATGGTTTCATGTGGC
CACGTTGTGCCGCAAGCCTGCGGCAGGAGTGCGCCTCGTGGAGATACGGT
CTTGCGTGTCACGGACTCTTCCACACGTGGAGCACGTAGCCTTTGGGCTC
GTCGACGAGGCTTTCGACGTTCATGCACGGTTCCGCAAAAAACAAAATCC
TCTGGAAGAAACGTCTGCTTAGAGTATAGACCCCTGAGTGCAAGCCTCCC
GCCGCTATTTCTTGTCCGTCTTACGTAGTTTTTTTTTTCTTCGCCATCTT
CTCGTTTGCTTCTTACGCGTGGTATTGGTGACGCCGGAGTACAGTTCTTT
TTGTGTTTGGCGTGAACGCGTGATTTTTCGTTGGAAGCGCTGCTGCTGTG
TTGAGGTCCAATGGCTTTGTGTTTTTTTGTTATTGACGCCGCCGATGACA
AGATAGTCGACGATAACCAGCCATTGCCTTCTCGTCCACCTGGAGCACCC
GTAAATTTCGAGCTCAATTGGCGTACAGGAGATACGCTTGCAGATGTTGC
AACTCAGCAACGGTCGTACCGCCAGAGACGGGGCGAGATGGATGCTATCC
CCATGACCTGGGCTTGTTTCTGTCTTGCCCAACCACCGCTATTTGCCACG
CTCTCGTCGGCTATGGCAGGTGACGACCTGTTCGTCATGCTGCGGCTTTC
TCCGAAGATGGTGAAGCGAGGGTGCGTCGTCAAGGTCCCTACCCTCGACA
AGGGAACGGCAAGTCTTTTCTTGCTGCCGTTTCGTTGGTGCTGTTGCGGT
TGTTGCTACGGTTGTCGGCGTTGGCTGTTGTTGCTGCGGAAAAAAGACAA
GGAATTACTAATTGCTGGGACGAAATCTCCGACAAATATTCCCAATCGTC
ACGTTCGAAGGTGAGGCGTACTCCACACAAAAAACAGAATCTGATTCATC
CATTCTTCGCCCATTTTACTTTTTTTGCTGTGTTTTTCTCGCGCGAAAGC
AGATTTCGATGCGGCTGAAACGGAGGGAGGCCAGGGACGGCTACGAGCGT
CGCTTGCCAGGGCTGGGCATGCCTCGTCGCAACGACGGCGGGGAGGACGG
CAGCAGTAACCGTGGAGACCTGATCGTGCACTTTATGGTGCCACCGGAGG
AAGATTAGTCAGCAGTTGCACATGCAGCCTGCTTTTCTTCCTATCCCGCT
CCATTTCTACAGGGAACTGCTGGTTTGGGGGCGGCGTGACGTTTCTGCTA
GATGTCGCGCCGTGCACTCGTTCATGTATGAAGCCTCCGTTTTTTCTGGG
TGGATCCTCATTAGACCATGCCATGCGTACCTGGCACCACCACGCAACAC
TTCCGGCCACAGCTATTATTTGAGGAGGGGCATCGAAACATTGTTGAGAG
TGATAGGGAGAGGTAGCGGTAGGAGCTTTTGTATCTCAGCGAAGAAACGC
TGAAACGGCGCATAAACTCCCGAACAACACAGGGCTGTGTGCAGATCACC
TATATGACCCACGCACATCTAGTGAGC
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Coding sequence (CDS) from alignment at Scaffold_349:82684..87010+

>EsuBft988_5a-0001 ID=EsuBft988_5a-0001|Name=EsuBft988_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_349:82684..87010+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAACAGGCAGCAGCCGCGGGAGGGGCGGGTGTGGCGGGGGGGGC
GTACCGGCCGGGGGCGGGGGCGGCGGCGGGGGGGGGTCCGTTCGAAGGGG
TCAGAGTGAACCTTTTCGACATATTTCGGTTCAGTCCGGGGAACAGGGAG
AACCTCGGCGTCCCGAAGGCACGGTGGCGGCAGATCGTTGTCAAGGTGGA
GGTTTCGCTAGAGGAGCTGCTGTCGGGGATTGTCAAGGAGATAAGCATTG
GCGACTCTATCATTGAGCGCTACAAGCAGGCGGCTCGTACCGGGCTGCTG
TCGGAGGTTTTGCAGGAGGGGGCAGCTGTGTTCGGAGCCCTGCTGATCAA
GTGCCCATTACCCGTATCAGCGGTGGCGTTCGCGGCGTACGTCCACCTCA
AGCTCCCGAGGGTGCCGCAGGGCGCCTTCAGGGTGCCGATTCTGCCGGGG
TACCGTAGAGGGACAAAGATTACGTTTAGCACGCCGGACGGGGTGGACGT
GACCTTCGAACTGGTCGAGAAGCAAAGCCAGTTTCGTCGCTCAGGTGACG
ACCTGTTCGTCATGCTGCGGCTTTCTCCGAAGATGGTGAAGCGAGGGTGC
GTCGTCAAGGTCCCTACCCTCGACAAGGGAACGGCAAATTTCGATGCGGC
TGAAACGGAGGGAGGCCAGGGACGGCTACGAGCGTCGCTTGCCAGGGCTG
GGCATGCCTCGTCGCAACGACGGCGGGGAGGACGGCAGCAGTAA
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