EsuBft988_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft988_3a-0001
Unique NameEsuBft988_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_349contigScaffold_349:111006..114093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0U0
ProteomeIdEsuBft988_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsPTHR12366
Protein domainsSignalP-noTM
Protein domainsIPR007803
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length175
Hectar predicted targeting categorymitochondrion
Evalue4.84e-225
EggNOG OGs2E6F7@1|root,2SD50@2759|Eukaryota
Ec32 ortholog descriptionArginine/Asparagine/Proline hydroxylase
Ec32 orthologEc-23_001510.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionAspartyl/Asparaginyl beta-hydroxylase
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0018193
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft988_3aEsuBft988_3aEctocarpus subulatus male Bft15bgeneScaffold_349 111006..114093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_3a-0001EsuBft988_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_349 111440..114093 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_3a-0001-exonagat-exon-108890Ectocarpus subulatus male Bft15bexonScaffold_349 111006..112160 -
EsuBft988_3a-0001-exonagat-exon-108889Ectocarpus subulatus male Bft15bexonScaffold_349 112703..112879 -
EsuBft988_3a-0001-exonEsuBft988_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_349 113231..113406 -
EsuBft988_3a-0001-exonagat-exon-108891Ectocarpus subulatus male Bft15bexonScaffold_349 113845..114093 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_3a-0001-exonagat-three_prime_utr-23814Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_349 111006..111439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft988_3a-0001-cdsEsuBft988_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_349 111440..112160 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft988_3a-0001 ID=EsuBft988_3a-0001|Name=EsuBft988_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1757bp|location=Sequence derived from alignment at Scaffold_349:111006..114093- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACGGGTATCAGGAGCTGTTCTTGCTTCGTCGATATGTTCGAGGGC
AGCCGTAACCCCAGCGTTTGTAGCCGTGCCACCACCGGCAGCAACATCGT
CGTCGTGGCACACCGCAGCGAGATCATGCTCACTCATGCCAGTGCAGTCC
GTAAGACAAGAGCAAGACGCGGGAGTGAAGGAGGAAGAGGAGGAAGAAGG
AACTTATGGAGGGGATGACCAGCGGAGATTTTGGGATACCGTGGTCAAGG
TTCTCAGGAGCGAGCTAGGCGCAGGAGAGAACCCGCCGGAAGACCTTTCG
CGTGTCTGGGGCTTCGTCGCGCACAACCGAGACGGAAAGGCGCCTCCCGC
AGAGGCGTCGCCCTCGTACAGAGCTACCGGCTTGTACTTCCCGGGGCTGG
AGGCCAAGCCTTGGTGGGATGACAGGTCAGAATTTTCTTGGCTGCAAGAT
TTGGAGGACGCCGCCCCTGATATCAAGCGGGAGATGGAGGCTCTCGAAAG
ATTGGGGGGGGCGCGGAGCTATAAGGGCGGCACGGGGGAGATGAGCACAG
TTTACGATGCTACACGTGGATGGGGTACGATGAGAATACGCTACATGGGC
AGGTTCGGTCAGCCCGGCGTCAACTACTCCCTCCTGCCGCGCACCCTGGC
CGCCCTGCGCCGGCTCCCGCTGGCCCCGGAGACCGCCGCCTTCCAGCGAC
AGCTCCCCGGCACGGGCCTCCCGCTGCACGTCGACCCGAGCAACTTCGTG
CTCGGCTGCCACGTAGGGGTGGTCGTACCCCCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCGGGGGCGGCGGGCGAAGAAGGGTCCGCAGACGGCTCGG
CGGATGCCTCGGCAGCGACTGCCGGCGACCGGCGAGGCGGGAAGGGGCGC
GGCGGCGCGAACCGGAACAAGAGGGTTGCCGGGGGGGTTGGGTTTGGGGG
AGGTGGCGGCGTGGTGAGAGAGAAGAAGGCGGCCGGAGGGGAATCCGGGG
GCGCGGGGTCTACCGCCGGGGTTGGTGCAGTCGAACGGAGCAATGGGACT
GGTCGTGATGGCGGGACGGAGAGAAGAGAGCGAAGCGGAGAGCGAGCGTG
GATAGAGGTTGCCGGCGAGAAACGGCACTGGGAACTGGGCCGAGCTTTCG
TCTTCGACCCCTCATTTTTGCACCGCACGTACAACCCTACGGACGGGGAG
CGGGTTATTTTGAACATTGATGTGTGGCATCCGGGGCTGAAGGAAGTCGA
GAAGACTGCTATTCGGAGGGTTTGCGAGCTGGTTGAGCAATGGAACTCGC
GGTCAGGCCTGTTCGAGGACTGAGCAAGAGGGCACTCCGCTACCGTAGTA
CACCGCGAGAACGGTGACGCTATGAAAACTCTGTCATTGCCTTTGTCATG
GTTGATTGCCGCATTCTCCAGTCTTGAGAGTCGTTTCAGACACCTTGGCT
ACACAAAGTGCGATGGGAACTTGGGGGTTGCCGCCGAATATCATCCGTAG
ACTTGATTCCGTTGATGACTCAATTCACGCCTTTGGGACGATTCGAGTGC
AACCTGCCAACTTCTGGGAAGAAGGTGGAGAGGGAACGATTGCAGTGCGG
AAGGGTTCAGAGCTGAAAGACGGTAACGACATGGAAGATGGAGCCTCCAG
CTGCGAAAATATATGTGGAGTCATACTACAGGGCCGCCCTTGACCTTGCC
TTGGTTTGGTATAATTTGATCATGTCAGCGGCTGATATTGCTATGTGGCA
TTGTAGC
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protein sequence of EsuBft988_3a-0001

>EsuBft988_3 ID=EsuBft988_3|Name=EsuBft988_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=440bp
MRRVSGAVLASSICSRAAVTPAFVAVPPPAATSSSWHTAARSCSLMPVQS
VRQEQDAGVKEEEEEEGTYGGDDQRRFWDTVVKVLRSELGAGENPPEDLS
RVWGFVAHNRDGKAPPAEASPSYRATGLYFPGLEAKPWWDDRSEFSWLQD
LEDAAPDIKREMEALERLGGARSYKGGTGEMSTVYDATRGWGTMRIRYMG
RFGQPGVNYSLLPRTLAALRRLPLAPETAAFQRQLPGTGLPLHVDPSNFV
LGCHVGVVVPPAAAAAAAAAAGAAGEEGSADGSADASAATAGDRRGGKGR
GGANRNKRVAGGVGFGGGGGVVREKKAAGGESGGAGSTAGVGAVERSNGT
GRDGGTERRERSGERAWIEVAGEKRHWELGRAFVFDPSFLHRTYNPTDGE
RVILNIDVWHPGLKEVEKTAIRRVCELVEQWNSRSGLFED
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mRNA from alignment at Scaffold_349:111006..114093-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft988_3a-0001 ID=EsuBft988_3a-0001|Name=EsuBft988_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3088bp|location=Sequence derived from alignment at Scaffold_349:111006..114093- (Ectocarpus subulatus male Bft15b)
ATGCGACGGGTATCAGGAGCTGTTCTTGCTTCGTCGATATGTTCGAGGGC
AGCCGTAACCCCAGCGTTTGTAGCCGTGCCACCACCGGCAGCAACATCGT
CGTCGTGGCACACCGCAGCGAGATCATGCTCACTCATGCCAGTGCAGTCC
GTAAGACAAGAGCAAGACGCGGGAGTGAAGGAGGAAGAGGAGGAAGAAGG
AACTTATGGAGGGGATGACCAGCGGAGATTTTGGGATACCGTGGTCAAGG
TATGAACACGGCCGTTTGGACTTTCGGCCGTATCTATTATGCACCCAACG
GCGGCAGGATCTCTTAGGTGTCCGCAGGTTGCAGTTTGACGGCCGATTTG
CCTGCGACAATTTGCCGTGTGTGCGGTAGAGCGTGTCGAGGTTCGACCAC
ACAGCAGGCAATATCGGCACCCGTTGGACGAAGGTCCCTTCTCTCAATAG
TTCAGCATATCTGGTTGAAGAAGCCACCCACGACATCGGACGACTCGCTG
CACTGCTGTACATGAAATCTCATGTAGGTGGACACAGCGGTGCATGTAAC
GTAAATCTGCATGTAGGAAGACAGCGCTCGACAGCAGTGCGTCCGTGACT
CTGTGTTGGTGCACTTCAGACGCATACAATATGTAGGCACACCTCACCAC
GGGCCCTCCTCGTGTGGCACCAAACCCCACCCGCCAGGTTCTCAGGAGCG
AGCTAGGCGCAGGAGAGAACCCGCCGGAAGACCTTTCGCGTGTCTGGGGC
TTCGTCGCGCACAACCGAGACGGAAAGGCGCCTCCCGCAGAGGCGTCGCC
CTCGTACAGAGCTACCGGCTTGTACTTCCCGGGGCTGGAGGCCAAGCCTT
GGTGGGATGACAGGTAAGAATGGTATAGTTTCGTGCAGAACCGTTGTAAG
AGACATGTCGATGTGACCAACAGCGTGACCGAGTGAGTAACCTTACCTAC
TTTTGTGGTCGCCTTCGCAGGTTATTTCTATTGTAAGTGAACATGTTGGA
TGTAACATGCTATCGGGTAAGTTGGGTTAAGGTTAGGGATAGAGTCTGCG
TACCCCGTCCCTGTTCTCTTTCCTGATAAAATTAGTCTCGCGGAGGCGGT
GTCCTTACAATATGTGTGTGCGGCGTAAATTATCGTTCGAGCGATTTTGG
ACCCTTGAACTCTTGTTTGTAGCATCACAACGGCACGTTGTTGTGCGCCA
TCGCTATTTGTCAGGTCAGAATTTTCTTGGCTGCAAGATTTGGAGGACGC
CGCCCCTGATATCAAGCGGGAGATGGAGGCTCTCGAAAGATTGGGGGGGG
CGCGGAGCTATAAGGGCGGCACGGGGGAGATGAGCACAGTTTACGATGCT
ACACGTGGATGGGGTACGATGAGAATACGCTACATGGGCAGGTGCGCGGA
GGGCGATACAAGCAGTGTTCGCTGATCGAGAAAAGGAATTATTTTGTCTG
TGTTTTTGGTGTCCTGGGGCAGCACTACAATATTCGGTTGCCGCAGTATG
CACTCCTCACCGCTCTTTGAAGTGGACTTGAATACAGTCGGCGGTCCTCA
ATACGGTACCCTCAATAGCGGATTGCCCTCTCTAGCGGCACCGAAATCGC
TTGGCACAAATGCATTTCTCAGTACAATGCCTATCGAGAGTAGCGGCACT
GCCCTCTGTAGTGGCACGAGCACCTCTTGCCACTATCTACCGCTGTTGAG
GGCCGCCGACTGTAACCAGATTCGGATAACCTCGAGGCACTCCTGTGACA
CGCACGACGCTGTTCTGCGGGTAGCTTCCGCCAGTGTCGGTGGCCCCACC
AGATCGTGGGCGTGCTTACTCACATGCTCCGGTTGGTCGATGTCCGAGGA
CTGTGGGTAACGTAAGGTTTGGTTGTTCACGCATGCTCCCTCTGGGCCTT
GTCTGACTTCACGCGCGAACACCAAAAAATCAGGTTCGGTCAGCCCGGCG
TCAACTACTCCCTCCTGCCGCGCACCCTGGCCGCCCTGCGCCGGCTCCCG
CTGGCCCCGGAGACCGCCGCCTTCCAGCGACAGCTCCCCGGCACGGGCCT
CCCGCTGCACGTCGACCCGAGCAACTTCGTGCTCGGCTGCCACGTAGGGG
TGGTCGTACCCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGGGGCG
GCGGGCGAAGAAGGGTCCGCAGACGGCTCGGCGGATGCCTCGGCAGCGAC
TGCCGGCGACCGGCGAGGCGGGAAGGGGCGCGGCGGCGCGAACCGGAACA
AGAGGGTTGCCGGGGGGGTTGGGTTTGGGGGAGGTGGCGGCGTGGTGAGA
GAGAAGAAGGCGGCCGGAGGGGAATCCGGGGGCGCGGGGTCTACCGCCGG
GGTTGGTGCAGTCGAACGGAGCAATGGGACTGGTCGTGATGGCGGGACGG
AGAGAAGAGAGCGAAGCGGAGAGCGAGCGTGGATAGAGGTTGCCGGCGAG
AAACGGCACTGGGAACTGGGCCGAGCTTTCGTCTTCGACCCCTCATTTTT
GCACCGCACGTACAACCCTACGGACGGGGAGCGGGTTATTTTGAACATTG
ATGTGTGGCATCCGGGGCTGAAGGAAGTCGAGAAGACTGCTATTCGGAGG
GTTTGCGAGCTGGTTGAGCAATGGAACTCGCGGTCAGGCCTGTTCGAGGA
CTGAGCAAGAGGGCACTCCGCTACCGTAGTACACCGCGAGAACGGTGACG
CTATGAAAACTCTGTCATTGCCTTTGTCATGGTTGATTGCCGCATTCTCC
AGTCTTGAGAGTCGTTTCAGACACCTTGGCTACACAAAGTGCGATGGGAA
CTTGGGGGTTGCCGCCGAATATCATCCGTAGACTTGATTCCGTTGATGAC
TCAATTCACGCCTTTGGGACGATTCGAGTGCAACCTGCCAACTTCTGGGA
AGAAGGTGGAGAGGGAACGATTGCAGTGCGGAAGGGTTCAGAGCTGAAAG
ACGGTAACGACATGGAAGATGGAGCCTCCAGCTGCGAAAATATATGTGGA
GTCATACTACAGGGCCGCCCTTGACCTTGCCTTGGTTTGGTATAATTTGA
TCATGTCAGCGGCTGATATTGCTATGTGGCATTGTAGC
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Coding sequence (CDS) from alignment at Scaffold_349:111006..114093-

>EsuBft988_3a-0001 ID=EsuBft988_3a-0001|Name=EsuBft988_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1323bp|location=Sequence derived from alignment at Scaffold_349:111006..114093- (Ectocarpus subulatus male Bft15b)
ATGCGACGGGTATCAGGAGCTGTTCTTGCTTCGTCGATATGTTCGAGGGC
AGCCGTAACCCCAGCGTTTGTAGCCGTGCCACCACCGGCAGCAACATCGT
CGTCGTGGCACACCGCAGCGAGATCATGCTCACTCATGCCAGTGCAGTCC
GTAAGACAAGAGCAAGACGCGGGAGTGAAGGAGGAAGAGGAGGAAGAAGG
AACTTATGGAGGGGATGACCAGCGGAGATTTTGGGATACCGTGGTCAAGG
TTCTCAGGAGCGAGCTAGGCGCAGGAGAGAACCCGCCGGAAGACCTTTCG
CGTGTCTGGGGCTTCGTCGCGCACAACCGAGACGGAAAGGCGCCTCCCGC
AGAGGCGTCGCCCTCGTACAGAGCTACCGGCTTGTACTTCCCGGGGCTGG
AGGCCAAGCCTTGGTGGGATGACAGGTCAGAATTTTCTTGGCTGCAAGAT
TTGGAGGACGCCGCCCCTGATATCAAGCGGGAGATGGAGGCTCTCGAAAG
ATTGGGGGGGGCGCGGAGCTATAAGGGCGGCACGGGGGAGATGAGCACAG
TTTACGATGCTACACGTGGATGGGGTACGATGAGAATACGCTACATGGGC
AGGTTCGGTCAGCCCGGCGTCAACTACTCCCTCCTGCCGCGCACCCTGGC
CGCCCTGCGCCGGCTCCCGCTGGCCCCGGAGACCGCCGCCTTCCAGCGAC
AGCTCCCCGGCACGGGCCTCCCGCTGCACGTCGACCCGAGCAACTTCGTG
CTCGGCTGCCACGTAGGGGTGGTCGTACCCCCCGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCGGGGGCGGCGGGCGAAGAAGGGTCCGCAGACGGCTCGG
CGGATGCCTCGGCAGCGACTGCCGGCGACCGGCGAGGCGGGAAGGGGCGC
GGCGGCGCGAACCGGAACAAGAGGGTTGCCGGGGGGGTTGGGTTTGGGGG
AGGTGGCGGCGTGGTGAGAGAGAAGAAGGCGGCCGGAGGGGAATCCGGGG
GCGCGGGGTCTACCGCCGGGGTTGGTGCAGTCGAACGGAGCAATGGGACT
GGTCGTGATGGCGGGACGGAGAGAAGAGAGCGAAGCGGAGAGCGAGCGTG
GATAGAGGTTGCCGGCGAGAAACGGCACTGGGAACTGGGCCGAGCTTTCG
TCTTCGACCCCTCATTTTTGCACCGCACGTACAACCCTACGGACGGGGAG
CGGGTTATTTTGAACATTGATGTGTGGCATCCGGGGCTGAAGGAAGTCGA
GAAGACTGCTATTCGGAGGGTTTGCGAGCTGGTTGAGCAATGGAACTCGC
GGTCAGGCCTGTTCGAGGACTGA
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