EsuBft985_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft985_9a-0001
Unique NameEsuBft985_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:433496..438333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
ProteomeIdEsuBft985_9
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length71
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_008470.1
Descriptionexpressed unknown protein
Date last modified2016-11-24
Date creation2016-06-14
NoteKleinjan H., annotator
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft985_9aEsuBft985_9aEctocarpus subulatus male Bft15bgeneScaffold_358 433496..438333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_9a-0001EsuBft985_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 435957..438333 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_9a-0001-exonagat-exon-17685Ectocarpus subulatus male Bft15bexonScaffold_358 433496..433521 +
EsuBft985_9a-0001-exonagat-exon-17686Ectocarpus subulatus male Bft15bexonScaffold_358 435781..436169 +
EsuBft985_9a-0001-exonagat-exon-17684Ectocarpus subulatus male Bft15bexonScaffold_358 436511..436561 +
EsuBft985_9a-0001-exonEsuBft985_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 438085..438333 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_9a-0001-exonagat-five_prime_utr-15505Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 433496..433521 +
EsuBft985_9a-0001-exonagat-five_prime_utr-15506Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 435781..435956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_9a-0001-cdsEsuBft985_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 435957..436169 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=715bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCAACACAAGGAACAGGAACAACAGCGGCGCCTGATTTTTCACTCGCAG
GGATCAGCCAAGAATATACGTTACGGATTTCTTCGGTGGCACACAACGAC
GGCGCAACACGACCATCGATTGCCCCAGGCAGCTGTTTCATCTGACTGAG
TGACTAGGAGAAGCCAAACGACACTTTCACAACACAAACACCGCAAGACA
CCATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAACGCGGAGCTC
TCTTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGATCAGCGATAT
CAGGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCCAGGTGTCCG
CGACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCCGCTGTGGAG
AAAAGGATGCAGAGGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGC
CAAACAACACAACGAGCGAGAAGAGCAGACGACGAACCTCCCCGCAACGA
ACCTGGCAAAGGAAAACGAAGCGGCAGAGCTGACCCGTAGATCCGAGGAG
CTAGACGTGGAGATCAGGGTGCAGCGGGAGGAACAAGCCACCGCTGAGAC
GGCATGCACCTCTTCCACTACAGTGAGCGGGTCCCCTTTGACTTTCACTA
CCGCCCCGCGGGGCCGCATTTCCCGCACCCCTACCCCAATGGTGATGACC
CTACCCCAGTGGTGA
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protein sequence of EsuBft985_9a-0001

>EsuBft985_9 ID=EsuBft985_9|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MGSSEVSQLCEMNAELSSCKENNDRTRQEISDIRVMIGLQEKRLESQVSA
TNRHRSGKAAATAAVEKRMQRLFDLRLKVDHIAKQHNEREEQTTNLPATN
LAKENEAAELTRRSEELDVEIRVQREEQATAETACTSSTTVSGSPLTFTT
APRGRISRTPTPMVMTLPQW
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mRNA from alignment at Scaffold_358:433496..438333+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4838bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)
AGCAACACAAGGAACAGGAACAACAGGTAAGCGGCATGAAAGCGGTACCT
CTCCACATAAGTCGCATTCTTGACGGGTGGGTGCGGGTGCGAAAGACAGA
CAGCGGCTGCTTGGCGGTTGTCAAGATTGTCCAGGCACTATACCTCCTAC
CGCTCCTTAGTTAGTTGTACTTGCTGTTGCCGCTTTCGGAGATACGTAGA
GGCATACTCGTAGCCCTTTTCAAATGAAGTGCACGTGTGTGTGGACCGAC
CCTTGCTGTTCACCACACCTCTAGTGCAAGAGCTAGGAGGTGGATCTCTA
AACTAGTGTGAGGGTGTCACTCTTCTCTCGCTTCTTTGTTCACCAAGAGA
GACAGTCAGCCATTACAACCTCTGACGACCTTTGGGACGGGAAAAGGTAC
ACAATTGGTTCTCCTGCCGTTTCGTGTTTCATTCACACTCGCGCGGGCGG
CACTGACGGAGAGAAGGCACAGCAGTTGACAGTTTCCTGAGTACGCGAAG
CAAGGCACAGCCCAGCACGCCCGTCTCTCTATTGGTATTGAGCGTAGCCT
TTGACATCTGCGCTCGTTCGCTCATATATTCTAGACTACAGCATTGTATT
TAGTGAGTGTATCCCACCGCGTCACCCGTTCGCGTTGCAAACTTGCTTGC
GACCTGAAGAAATGGTCAAAGTGAAAACAATATCGAGACACATAAAGATA
GCGCCCGCACTTAAGAACTTAGCAGTTAAGAAATCGAGATTCGCAAAAAA
TCAGAAGCTAAGAACTTGAGCACCATTTGTGAGCTCGGTTTAAGAACCCT
ACTCTAAAACCTATATAGCGGTCATTTGTAGCCCACAAGAGGATGATCAG
CAAAATATGAACCCGAGCCACGGCCCAAACTCGAGGTTGTTAAGTGCGGG
CGCCATCTGTAGGCCCACCAATCGAAAATCGGGGTCCGTGGGGGAGGGGG
GGGCGGGGGGGGGGGATTCCGGGGGGGTCTAATTGCTAGGCCGTTTTTCA
TCAGCACTACAGACCAGGCACAGTGACTTGGATGCTCGCGAACATGACGT
ACTCATTCCGCTTCAAAAATCCAGGAAACGCCTGCATATCTCAGTTTTCC
AAGTTCTAACTCCAGTGCGAAACTTCAATCGCAAACTAACCGTCCGCTGA
CTCCCTCTCGTGTACAATGTGAAATAATAGTATCTGAGACTGGAGCCCTT
GCGATCACAGCAGACTAGCGGTTCGCGATTTTCCATACGATCCTTCTATC
ATCGAGATCGGTGAGCTACACGCTGGATTGTTGTAGCTGTTGTGCGGTCC
GATTTCGGGACGCTTCAAGCACCTTTGCTTCTAGCTAGACCTACATATAC
ATCACCGCAGGCATGCAAACCGGCTGTGGCGACGAGAAGAACACATGTGA
GGGAAGAGCTGCGCTGAAGTTCGCAGCCCCACAGGCTCACACAGGTGCTG
ATCCGCCGTTGCTGTTTGCTTGAAGCGTTTCAAAATCGGACCGCACAGCA
GCTGCAAAAATCCTGCTTGTAGGTCACAGATAGATCTCGATGATAGAAGG
ATCGTTTGGAAAAACCCGGATCGCTAGTCAGTAGTGCATCGCAAGGGTTA
CAATCTCAGATACACGAAAGGGGGTCAGCGGACGGTTTATTTGCGATTGA
AGTTTCGTACTGAAGTTAGACTCTAGAAAACTGTGATATGCAGGCGTTTC
CTGTATTTTTGAAGATGAAAACTGCGGTCCCCACCGCACCCTTAACAACC
CATATCAAAGCGAAATCATTCAAGGATCTGCTCCAGACATCTCTCCTACT
GCTATATTGCTTCCCTGAGATACTGCATAGGAACATTGATGTTCACGGGT
GGCGAACAAGGCAGCGGGGAGAAGCGTTGTTGAAGGTATTCATTTTGTTT
GGATCGAAACGTTCCCTGAGTGTTCGTCTTGTTGTTCCGAAGAACTCGAA
GTCACCATGGCAACAACATTGCTATTTACTTCCTCGCTGAAGGACTGTTG
TACCTTCTACCTTTTGCCTCGTCCCACCCGCTCTGAGTACTACAGTGCAC
GACCTCAGCTCTTCCCAGCAAGTTGGCCGTAACGCGTAGTAGCCGTTCAC
TCTCTTTGGGGGGTGATTGTTACCTGTACACGCCGCAGCCCCTGGCTGCG
GATAATTGCCCGTGCTTTTTAATGTACGCCTAGTCACCGTAAGAAGACAA
GGCTTACAGCACGAAGCCGTGGCCGTTGGTGATACATCACATTTCGCCCC
ACTCAGTTCACTCGCGTCGCGTGTACGTTCCCTAGCGGCGCCTGATTTTT
CACTCGCAGGGATCAGCCAAGAATATACGTTACGGATTTCTTCGGTGGCA
CACAACGACGGCGCAACACGACCATCGATTGCCCCAGGCAGCTGTTTCAT
CTGACTGAGTGACTAGGAGAAGCCAAACGACACTTTCACAACACAAACAC
CGCAAGACACCATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAAC
GCGGAGCTCTCTTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGAT
CAGCGATATCAGGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCC
AGGTGTCCGCGACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCC
GCTGTGGAGAAAAGGATGCAGAGGGTGAGACGAACCGTACGCGGAAATCA
TTTTTACTGTTGGTCGTTCATTTTTCGTCATTCTATCGTGCGCGGTTGTT
TTTTTTGTGCGCCTTGATGTGTTTCGCCGAGAGACTTATTTGTAACGGCT
GGCCGTGTCGGGATGCAAGAATGCGGCCCACTTGTCCCCTCACCTGCCAC
TGGCGCTCGTGTCCTCGTTGTCGTCGCTCGTGATGTTGTTGTTGGAAGAA
TGAAGTCCACTTGTCCCCTCGCCTGCCTTCAGTCGCCGTTGACGGTCCTA
TGCTTGAGATTGTCCCCCCCTGCCCCCTCACCTGCCCGAAATCGTGTCCT
TCTTGCGATCGACAGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGC
CAAACAACACAACGAGGTCCACCAGCAGCGCATGAAACGAGCGGCTGCAG
GTTCAAACAAATATGCTTTCTGGTTGCCATGAGAAGTGGCCCTTCATGGA
CACCCTCTACTCTGATGAAGTCGAAGGGCCCACTTTCAAAATACGGTTCT
GCGTCTCGCGCTTTGACAACCTTCGTGCAACCCGCTTGCCGAGTCACGTT
GAATCGCGCTTCATGGCCGTCTGCCTAGCAGTATTTTGCATCCCGGTTTG
GTAGGAGTAGCAAGATCTAAAGTCCAAAGCCTGCGGCTAAACTCAATGTT
GCATGCCTCAGCTGGCCCTCTTCGTCACGCCGAGAGTAACATGTTCGCTC
CTCCCCCGCAAGGTATTAATGATGTGAACACCGTAGAAAGTAGACGACGC
TAAAAAACTGGCATGCGACGCGTGAGCAGTGATTCTAGCGTGCAAATTTG
TATCACCACCGTGTCCCAGCACCAGTCAACCAGGAACAGAATGATAGAAC
CTTATCGATTCATCACATTAATTTGCGGTGACACCCCACCCCCCCCTCCC
GCTCAAAGGCGTACAACAGCACCAAGAAGGAAGAGCTACAGAAGTGCCCC
AAGAGCTCCGGGTAGAGCTGGAGCGGCTGGAGAGCTCCGTCACGAAGGAA
ATCGAAACGAAAAAGGCACGCCAACACTCGTCGTTGCGGTTGTCGACAGG
AGACCATGGCAGCTGACTTTGGCATCTGTCTCTGCACCCTTGGTTATGAA
ATCATCGGCAAAAATTGTTTGATGGTTGGCAACTTCTTTTATTTTGCTTG
AGAATTTTCGAACATAGTCATAAATTTCACAAGGGTAGCACTTTATCCCG
TGTGCTCGTGCGGGTACTCTGCGGGGTACAGCCGGTCCGTTTGGCGGAGT
TCTATGGGGTATTCGCCTGACTTGGGTGCTGTTGTGCTACTTATACAGGT
TAGAGTCAATCGCCGATTCCATTCCCGTCCTCGCAATCGACCAACACGCA
TTGTCTTACTAACTATATGCGTGCCATCCCGGAGGGGTAGCACACTGTCT
CGTTGTTTGTTTCCCCACCTGACAGTCGCGTCTCAAAGGTTCAAAACCTT
TCGCTGCAGGGACTTAATCACAAACACTCGAAAATCGAACTGTTCCCCTT
CGCGACGCTCCGCTGTATTCCCCCCACCGCATTGTAAAATAGTCAGTCGA
AATGATCCTGCCACGTTGTTGTTGTTATTGTTCGCTTCCGAGTTGAACCC
GGAAGCGGCCGTGGTCATCTAACGATCACATGCTGGTCGAACAGACCTCT
TAGCTTCTCTTACGCGCCCACAATCAACCATTGCACGGGCTAATGACGCG
AGCAGGTGTACGAGGAAAGCTATGCGTTAATTAAAGTGACCGTTCGAGTA
GGTTCGAGCTTTTGGAAGCGTATGCTTTACTTCGTTCACGCATCGCGTGA
CTGCGGTATGTGGTGGCTGATCCCACGGTAACCTTATTTGTGGTGTGCGT
GTGTGTTTTCTGCCAACTTGTTGTTGTCGGTCCCGGCAGCGAGAAGAGCA
GACGACGAACCTCCCCGCAACGAACCTGGCAAAGGAAAACGAAGCGGCAG
AGCTGACCCGTAGATCCGAGGAGCTAGACGTGGAGATCAGGGTGCAGCGG
GAGGAACAAGCCACCGCTGAGACGGCATGCACCTCTTCCACTACAGTGAG
CGGGTCCCCTTTGACTTTCACTACCGCCCCGCGGGGCCGCATTTCCCGCA
CCCCTACCCCAATGGTGATGACCCTACCCCAGTGGTGA
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Coding sequence (CDS) from alignment at Scaffold_358:433496..438333+

>EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)
ATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAACGCGGAGCTCTC
TTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGATCAGCGATATCA
GGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCCAGGTGTCCGCG
ACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCCGCTGTGGAGAA
AAGGATGCAGAGGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGCCA
AACAACACAACGAGCGAGAAGAGCAGACGACGAACCTCCCCGCAACGAAC
CTGGCAAAGGAAAACGAAGCGGCAGAGCTGACCCGTAGATCCGAGGAGCT
AGACGTGGAGATCAGGGTGCAGCGGGAGGAACAAGCCACCGCTGAGACGG
CATGCACCTCTTCCACTACAGTGAGCGGGTCCCCTTTGACTTTCACTACC
GCCCCGCGGGGCCGCATTTCCCGCACCCCTACCCCAATGGTGATGACCCT
ACCCCAGTGGTGA
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