Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Status | Manually annotated |
| ProteomeId | EsuBft985_9 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 71 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_008470.1 |
| Description | expressed unknown protein |
| Date last modified | 2016-11-24 |
| Date creation | 2016-06-14 |
| Note | Kleinjan H., annotator |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=715bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGCAACACAAGGAACAGGAACAACAGCGGCGCCTGATTTTTCACTCGCAG
GGATCAGCCAAGAATATACGTTACGGATTTCTTCGGTGGCACACAACGAC
GGCGCAACACGACCATCGATTGCCCCAGGCAGCTGTTTCATCTGACTGAG
TGACTAGGAGAAGCCAAACGACACTTTCACAACACAAACACCGCAAGACA
CCATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAACGCGGAGCTC
TCTTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGATCAGCGATAT
CAGGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCCAGGTGTCCG
CGACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCCGCTGTGGAG
AAAAGGATGCAGAGGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGC
CAAACAACACAACGAGCGAGAAGAGCAGACGACGAACCTCCCCGCAACGA
ACCTGGCAAAGGAAAACGAAGCGGCAGAGCTGACCCGTAGATCCGAGGAG
CTAGACGTGGAGATCAGGGTGCAGCGGGAGGAACAAGCCACCGCTGAGAC
GGCATGCACCTCTTCCACTACAGTGAGCGGGTCCCCTTTGACTTTCACTA
CCGCCCCGCGGGGCCGCATTTCCCGCACCCCTACCCCAATGGTGATGACC
CTACCCCAGTGGTGA back to topprotein sequence of EsuBft985_9a-0001 >EsuBft985_9 ID=EsuBft985_9|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MGSSEVSQLCEMNAELSSCKENNDRTRQEISDIRVMIGLQEKRLESQVSA
TNRHRSGKAAATAAVEKRMQRLFDLRLKVDHIAKQHNEREEQTTNLPATN
LAKENEAAELTRRSEELDVEIRVQREEQATAETACTSSTTVSGSPLTFTT
APRGRISRTPTPMVMTLPQW back to topmRNA from alignment at Scaffold_358:433496..438333+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4838bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)
AGCAACACAAGGAACAGGAACAACAGGTAAGCGGCATGAAAGCGGTACCT
CTCCACATAAGTCGCATTCTTGACGGGTGGGTGCGGGTGCGAAAGACAGA
CAGCGGCTGCTTGGCGGTTGTCAAGATTGTCCAGGCACTATACCTCCTAC
CGCTCCTTAGTTAGTTGTACTTGCTGTTGCCGCTTTCGGAGATACGTAGA
GGCATACTCGTAGCCCTTTTCAAATGAAGTGCACGTGTGTGTGGACCGAC
CCTTGCTGTTCACCACACCTCTAGTGCAAGAGCTAGGAGGTGGATCTCTA
AACTAGTGTGAGGGTGTCACTCTTCTCTCGCTTCTTTGTTCACCAAGAGA
GACAGTCAGCCATTACAACCTCTGACGACCTTTGGGACGGGAAAAGGTAC
ACAATTGGTTCTCCTGCCGTTTCGTGTTTCATTCACACTCGCGCGGGCGG
CACTGACGGAGAGAAGGCACAGCAGTTGACAGTTTCCTGAGTACGCGAAG
CAAGGCACAGCCCAGCACGCCCGTCTCTCTATTGGTATTGAGCGTAGCCT
TTGACATCTGCGCTCGTTCGCTCATATATTCTAGACTACAGCATTGTATT
TAGTGAGTGTATCCCACCGCGTCACCCGTTCGCGTTGCAAACTTGCTTGC
GACCTGAAGAAATGGTCAAAGTGAAAACAATATCGAGACACATAAAGATA
GCGCCCGCACTTAAGAACTTAGCAGTTAAGAAATCGAGATTCGCAAAAAA
TCAGAAGCTAAGAACTTGAGCACCATTTGTGAGCTCGGTTTAAGAACCCT
ACTCTAAAACCTATATAGCGGTCATTTGTAGCCCACAAGAGGATGATCAG
CAAAATATGAACCCGAGCCACGGCCCAAACTCGAGGTTGTTAAGTGCGGG
CGCCATCTGTAGGCCCACCAATCGAAAATCGGGGTCCGTGGGGGAGGGGG
GGGCGGGGGGGGGGGATTCCGGGGGGGTCTAATTGCTAGGCCGTTTTTCA
TCAGCACTACAGACCAGGCACAGTGACTTGGATGCTCGCGAACATGACGT
ACTCATTCCGCTTCAAAAATCCAGGAAACGCCTGCATATCTCAGTTTTCC
AAGTTCTAACTCCAGTGCGAAACTTCAATCGCAAACTAACCGTCCGCTGA
CTCCCTCTCGTGTACAATGTGAAATAATAGTATCTGAGACTGGAGCCCTT
GCGATCACAGCAGACTAGCGGTTCGCGATTTTCCATACGATCCTTCTATC
ATCGAGATCGGTGAGCTACACGCTGGATTGTTGTAGCTGTTGTGCGGTCC
GATTTCGGGACGCTTCAAGCACCTTTGCTTCTAGCTAGACCTACATATAC
ATCACCGCAGGCATGCAAACCGGCTGTGGCGACGAGAAGAACACATGTGA
GGGAAGAGCTGCGCTGAAGTTCGCAGCCCCACAGGCTCACACAGGTGCTG
ATCCGCCGTTGCTGTTTGCTTGAAGCGTTTCAAAATCGGACCGCACAGCA
GCTGCAAAAATCCTGCTTGTAGGTCACAGATAGATCTCGATGATAGAAGG
ATCGTTTGGAAAAACCCGGATCGCTAGTCAGTAGTGCATCGCAAGGGTTA
CAATCTCAGATACACGAAAGGGGGTCAGCGGACGGTTTATTTGCGATTGA
AGTTTCGTACTGAAGTTAGACTCTAGAAAACTGTGATATGCAGGCGTTTC
CTGTATTTTTGAAGATGAAAACTGCGGTCCCCACCGCACCCTTAACAACC
CATATCAAAGCGAAATCATTCAAGGATCTGCTCCAGACATCTCTCCTACT
GCTATATTGCTTCCCTGAGATACTGCATAGGAACATTGATGTTCACGGGT
GGCGAACAAGGCAGCGGGGAGAAGCGTTGTTGAAGGTATTCATTTTGTTT
GGATCGAAACGTTCCCTGAGTGTTCGTCTTGTTGTTCCGAAGAACTCGAA
GTCACCATGGCAACAACATTGCTATTTACTTCCTCGCTGAAGGACTGTTG
TACCTTCTACCTTTTGCCTCGTCCCACCCGCTCTGAGTACTACAGTGCAC
GACCTCAGCTCTTCCCAGCAAGTTGGCCGTAACGCGTAGTAGCCGTTCAC
TCTCTTTGGGGGGTGATTGTTACCTGTACACGCCGCAGCCCCTGGCTGCG
GATAATTGCCCGTGCTTTTTAATGTACGCCTAGTCACCGTAAGAAGACAA
GGCTTACAGCACGAAGCCGTGGCCGTTGGTGATACATCACATTTCGCCCC
ACTCAGTTCACTCGCGTCGCGTGTACGTTCCCTAGCGGCGCCTGATTTTT
CACTCGCAGGGATCAGCCAAGAATATACGTTACGGATTTCTTCGGTGGCA
CACAACGACGGCGCAACACGACCATCGATTGCCCCAGGCAGCTGTTTCAT
CTGACTGAGTGACTAGGAGAAGCCAAACGACACTTTCACAACACAAACAC
CGCAAGACACCATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAAC
GCGGAGCTCTCTTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGAT
CAGCGATATCAGGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCC
AGGTGTCCGCGACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCC
GCTGTGGAGAAAAGGATGCAGAGGGTGAGACGAACCGTACGCGGAAATCA
TTTTTACTGTTGGTCGTTCATTTTTCGTCATTCTATCGTGCGCGGTTGTT
TTTTTTGTGCGCCTTGATGTGTTTCGCCGAGAGACTTATTTGTAACGGCT
GGCCGTGTCGGGATGCAAGAATGCGGCCCACTTGTCCCCTCACCTGCCAC
TGGCGCTCGTGTCCTCGTTGTCGTCGCTCGTGATGTTGTTGTTGGAAGAA
TGAAGTCCACTTGTCCCCTCGCCTGCCTTCAGTCGCCGTTGACGGTCCTA
TGCTTGAGATTGTCCCCCCCTGCCCCCTCACCTGCCCGAAATCGTGTCCT
TCTTGCGATCGACAGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGC
CAAACAACACAACGAGGTCCACCAGCAGCGCATGAAACGAGCGGCTGCAG
GTTCAAACAAATATGCTTTCTGGTTGCCATGAGAAGTGGCCCTTCATGGA
CACCCTCTACTCTGATGAAGTCGAAGGGCCCACTTTCAAAATACGGTTCT
GCGTCTCGCGCTTTGACAACCTTCGTGCAACCCGCTTGCCGAGTCACGTT
GAATCGCGCTTCATGGCCGTCTGCCTAGCAGTATTTTGCATCCCGGTTTG
GTAGGAGTAGCAAGATCTAAAGTCCAAAGCCTGCGGCTAAACTCAATGTT
GCATGCCTCAGCTGGCCCTCTTCGTCACGCCGAGAGTAACATGTTCGCTC
CTCCCCCGCAAGGTATTAATGATGTGAACACCGTAGAAAGTAGACGACGC
TAAAAAACTGGCATGCGACGCGTGAGCAGTGATTCTAGCGTGCAAATTTG
TATCACCACCGTGTCCCAGCACCAGTCAACCAGGAACAGAATGATAGAAC
CTTATCGATTCATCACATTAATTTGCGGTGACACCCCACCCCCCCCTCCC
GCTCAAAGGCGTACAACAGCACCAAGAAGGAAGAGCTACAGAAGTGCCCC
AAGAGCTCCGGGTAGAGCTGGAGCGGCTGGAGAGCTCCGTCACGAAGGAA
ATCGAAACGAAAAAGGCACGCCAACACTCGTCGTTGCGGTTGTCGACAGG
AGACCATGGCAGCTGACTTTGGCATCTGTCTCTGCACCCTTGGTTATGAA
ATCATCGGCAAAAATTGTTTGATGGTTGGCAACTTCTTTTATTTTGCTTG
AGAATTTTCGAACATAGTCATAAATTTCACAAGGGTAGCACTTTATCCCG
TGTGCTCGTGCGGGTACTCTGCGGGGTACAGCCGGTCCGTTTGGCGGAGT
TCTATGGGGTATTCGCCTGACTTGGGTGCTGTTGTGCTACTTATACAGGT
TAGAGTCAATCGCCGATTCCATTCCCGTCCTCGCAATCGACCAACACGCA
TTGTCTTACTAACTATATGCGTGCCATCCCGGAGGGGTAGCACACTGTCT
CGTTGTTTGTTTCCCCACCTGACAGTCGCGTCTCAAAGGTTCAAAACCTT
TCGCTGCAGGGACTTAATCACAAACACTCGAAAATCGAACTGTTCCCCTT
CGCGACGCTCCGCTGTATTCCCCCCACCGCATTGTAAAATAGTCAGTCGA
AATGATCCTGCCACGTTGTTGTTGTTATTGTTCGCTTCCGAGTTGAACCC
GGAAGCGGCCGTGGTCATCTAACGATCACATGCTGGTCGAACAGACCTCT
TAGCTTCTCTTACGCGCCCACAATCAACCATTGCACGGGCTAATGACGCG
AGCAGGTGTACGAGGAAAGCTATGCGTTAATTAAAGTGACCGTTCGAGTA
GGTTCGAGCTTTTGGAAGCGTATGCTTTACTTCGTTCACGCATCGCGTGA
CTGCGGTATGTGGTGGCTGATCCCACGGTAACCTTATTTGTGGTGTGCGT
GTGTGTTTTCTGCCAACTTGTTGTTGTCGGTCCCGGCAGCGAGAAGAGCA
GACGACGAACCTCCCCGCAACGAACCTGGCAAAGGAAAACGAAGCGGCAG
AGCTGACCCGTAGATCCGAGGAGCTAGACGTGGAGATCAGGGTGCAGCGG
GAGGAACAAGCCACCGCTGAGACGGCATGCACCTCTTCCACTACAGTGAG
CGGGTCCCCTTTGACTTTCACTACCGCCCCGCGGGGCCGCATTTCCCGCA
CCCCTACCCCAATGGTGATGACCCTACCCCAGTGGTGA back to topCoding sequence (CDS) from alignment at Scaffold_358:433496..438333+ >EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)
ATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAACGCGGAGCTCTC
TTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGATCAGCGATATCA
GGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCCAGGTGTCCGCG
ACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCCGCTGTGGAGAA
AAGGATGCAGAGGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGCCA
AACAACACAACGAGCGAGAAGAGCAGACGACGAACCTCCCCGCAACGAAC
CTGGCAAAGGAAAACGAAGCGGCAGAGCTGACCCGTAGATCCGAGGAGCT
AGACGTGGAGATCAGGGTGCAGCGGGAGGAACAAGCCACCGCTGAGACGG
CATGCACCTCTTCCACTACAGTGAGCGGGTCCCCTTTGACTTTCACTACC
GCCCCGCGGGGCCGCATTTCCCGCACCCCTACCCCAATGGTGATGACCCT
ACCCCAGTGGTGA back to top
|