EsuBft985_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft985_7a-0001
Unique NameEsuBft985_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:419624..421164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolsulP
Seed ortholog2880.D7FPW1
ProteomeIdEsuBft985_7
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsIPR030402
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsIPR001902
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteprobable sulfate transporter os:arabidopsis thaliana gn:sultr3 5 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length850
Hectar predicted targeting categorysignal peptide
Evalue1.22e-69
EggNOG OGsCOG0659@1|root,KOG0236@2759|Eukaryota
Ec32 ortholog descriptionSTAS domain
Ec32 orthologEc-01_008480.1
Date last modified2016-11-24
Date creation2016-06-14
Descriptionsulfate permease
Descriptionsecondary active sulfate transmembrane transporter activity
COG categoryU
NoteKleinjan H., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0006810
GO0097066
GO0010996
GO1902476
GO0016021
GO0090102
GO0008271
GO0008272
tcdb2.A.53
GO1902074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft985_7aEsuBft985_7aEctocarpus subulatus male Bft15bgeneScaffold_358 419624..421164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_7a-0001EsuBft985_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 419687..420752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_7a-0001-exonagat-exon-17671Ectocarpus subulatus male Bft15bexonScaffold_358 419624..419839 +
EsuBft985_7a-0001-exonEsuBft985_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 420488..420700 +
EsuBft985_7a-0001-exonagat-exon-17670Ectocarpus subulatus male Bft15bexonScaffold_358 420744..421164 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_7a-0001-exonagat-five_prime_utr-15503Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 419624..419686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_7a-0001-cdsEsuBft985_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 419687..419839 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_7a-0001-exonagat-three_prime_utr-23789Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 420753..421164 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft985_7a-0001 ID=EsuBft985_7a-0001|Name=EsuBft985_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=850bp|location=Sequence derived from alignment at Scaffold_358:419624..421164+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATTCGACACCGCTTCCAGTTCAGGCCCAGCCAGACCCCCAGCCCGAGCGA
GTACGTGGCCAAGATGAAGAGAAAGATGGCCAAGAGGCTCGGCAGCCCTC
TGGCCGTGCTCAACTTCTTGCTTCCGATCACGAAGCAGCTCAACAACTAC
ACGTCCGAGAAGTTGGCGAGAGACGCTGTCGTGGGGTGCACCATGGCGAC
CCTTATGATACCACAGGGGCTGGCTTTCGCGACCGTGTCTGGCATCCCCA
TCCTTTACGGGCTCTACATCGTGTGGGCCCCGCCCTTCTTCTACTCGCTC
TTCGGGGTCAGCCTCCACGTCAGCTACGGCCCGTTCGCCCTCGTGGGGCT
CTTCATCAGCGACGCGCTGCGCATCCGGGGCTACCAGCCGTGCGACGGCC
TGTGCCGCGACCAGCCGGAGGAGACTAAGAGAGGATGATCGTTTGTTGTG
CATGCTGTTGGTCTCGTTGTTATTGGTTTTTTGTTACAATGGTTGTTGTT
GAGACCACCTTTATAAAGGTTGAAACTCCCCAACGTCTGTCGAGGACGAT
GCCCTCTTTTCCACAATGGCGTCGACGAAGAGATGTCAGCGTGTCTGCTT
TTGGTTGCTAAAGACACGGGTTCAAGACCTGCTGCTCACCTAATTTTCTT
CCGGAGTACGGAAAAAAGAAAAACGGTGGGTGGGCCAAGAAACGATGCAC
TGTCTATCGAACTCGAAACTTCTGGCAATGCGTGGCGGAAGTGACGCACC
CGCACACACGCACAGAACATGGTTGGAAAAACGGTGGTTCTACTCGCCGC
CAGCCGGTCGGGTTCCGGTTACCCCAAGAAGACTGCTCTTGCCTAGCAAA
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protein sequence of EsuBft985_7a-0001

>EsuBft985_7 ID=EsuBft985_7|Name=EsuBft985_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MKRKMAKRLGSPLAVLNFLLPITKQLNNYTSEKLARDAVVGCTMATLMIP
QGLAFATVSGIPILYGLYIVWAPPFFYSLFGVSLHVSYGPFALVGLFISD
ALRIRGYQPCDGLCRDQPEETKRG
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mRNA from alignment at Scaffold_358:419624..421164+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft985_7a-0001 ID=EsuBft985_7a-0001|Name=EsuBft985_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1541bp|location=Sequence derived from alignment at Scaffold_358:419624..421164+ (Ectocarpus subulatus male Bft15b)
ATTCGACACCGCTTCCAGTTCAGGCCCAGCCAGACCCCCAGCCCGAGCGA
GTACGTGGCCAAGATGAAGAGAAAGATGGCCAAGAGGCTCGGCAGCCCTC
TGGCCGTGCTCAACTTCTTGCTTCCGATCACGAAGCAGCTCAACAACTAC
ACGTCCGAGAAGTTGGCGAGAGACGCTGTCGTGGGGTGCACCATGGCGAC
CCTTATGATACCACAGGTATGCACCTGCGGTAAGCGTGTTTTTTTCAATA
TGTTTATACACCGGCTGCGTACTTGTTGACATGAGGGAAAGAAGTTTGCG
CGTCGGCTTCGCTGTCGAGTTGAAGGCATGCATCGCGAAGGGTGTGGGTT
GTCCCTCTCTGTTGGTGTGGACATGGATACACCATGAGTGCTGTAGTTGC
TCCCTCATCAGCGAAGGCAATGGCAAAGAGTCGGGTAGTTTAGATGCAGC
AAGCGACAGTAGTGATGGATCATTGAAGAACATTGACATAATGCCTTTTT
GCCAAGCTTGGGCAGCCTCTCTCTCCGTCATCATGCCCACCGCCGTTTCA
CGAACATGTACCAGCTTTTTTTTCAATGTGTCGCACCCGCCTATTTGCGA
CGGCACTGCAGCGTTCACCCTCCCTCCTGTCGGGCCCTGTACCTCTAAAA
CTTTGTTTCTTTTGCTCATCTTGTAGTCCAAGTATTCAATCTAGCACTCG
TCGAGACTCGTCGGATATCCTTGGCATGGTCTCTATCCATACCTCTGGGT
TCATCGAGCTGTGAGGACAACTGCAGTAGTCTTCTTCGCCGCCGCAGTGT
TCTTTCCCTGAAAAAGGGGTTTCGATTGTGTATGTATGCCGATCCTGAAA
CGTGCCACACGCAGGGGCTGGCTTTCGCGACCGTGTCTGGCATCCCCATC
CTTTACGGGCTCTACATCGTGTGGGCCCCGCCCTTCTTCTACTCGCTCTT
CGGGGTCAGCCTCCACGTCAGCTACGGCCCGTTCGCCCTCGTGGGGCTCT
TCATCAGCGACGCGCTGCGCATCCGGGGCTACCAGCCGTGCGACGGCCTG
TGCCGCGACCAGCCGGAGGAGACTAAGGTATGTTCTTGTTCCGCGTGCTG
TCGTTGGTGTCTAACGCCAGAGAGGATGATCGTTTGTTGTGCATGCTGTT
GGTCTCGTTGTTATTGGTTTTTTGTTACAATGGTTGTTGTTGAGACCACC
TTTATAAAGGTTGAAACTCCCCAACGTCTGTCGAGGACGATGCCCTCTTT
TCCACAATGGCGTCGACGAAGAGATGTCAGCGTGTCTGCTTTTGGTTGCT
AAAGACACGGGTTCAAGACCTGCTGCTCACCTAATTTTCTTCCGGAGTAC
GGAAAAAAGAAAAACGGTGGGTGGGCCAAGAAACGATGCACTGTCTATCG
AACTCGAAACTTCTGGCAATGCGTGGCGGAAGTGACGCACCCGCACACAC
GCACAGAACATGGTTGGAAAAACGGTGGTTCTACTCGCCGCCAGCCGGTC
GGGTTCCGGTTACCCCAAGAAGACTGCTCTTGCCTAGCAAA
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Coding sequence (CDS) from alignment at Scaffold_358:419624..421164+

>EsuBft985_7a-0001 ID=EsuBft985_7a-0001|Name=EsuBft985_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_358:419624..421164+ (Ectocarpus subulatus male Bft15b)
ATGAAGAGAAAGATGGCCAAGAGGCTCGGCAGCCCTCTGGCCGTGCTCAA
CTTCTTGCTTCCGATCACGAAGCAGCTCAACAACTACACGTCCGAGAAGT
TGGCGAGAGACGCTGTCGTGGGGTGCACCATGGCGACCCTTATGATACCA
CAGGGGCTGGCTTTCGCGACCGTGTCTGGCATCCCCATCCTTTACGGGCT
CTACATCGTGTGGGCCCCGCCCTTCTTCTACTCGCTCTTCGGGGTCAGCC
TCCACGTCAGCTACGGCCCGTTCGCCCTCGTGGGGCTCTTCATCAGCGAC
GCGCTGCGCATCCGGGGCTACCAGCCGTGCGACGGCCTGTGCCGCGACCA
GCCGGAGGAGACTAAGAGAGGATGA
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