EsuBft985_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft985_3a-0001
Unique Name	EsuBft985_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_358	contig	Scaffold_358:392159..395861 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft985_3
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	164
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	S-adenosyl-L-methionine-dependent methyltransferase
Ec32 ortholog	Ec-00_010600.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft985_3a	EsuBft985_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 392159..395861 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_3a-0001	EsuBft985_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 392159..395861 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_3a-0001-exon	agat-exon-17650	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 392159..392461 +
EsuBft985_3a-0001-exon	agat-exon-17646	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 393519..393801 +
EsuBft985_3a-0001-exon	EsuBft985_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 393853..393875 +
EsuBft985_3a-0001-exon	agat-exon-17647	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 394155..394322 +
EsuBft985_3a-0001-exon	agat-exon-17648	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 394681..394874 +
EsuBft985_3a-0001-exon	agat-exon-17649	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 395189..395861 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_3a-0001-cds	EsuBft985_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 392159..392461 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:392159..395861+
coding sequence from alignment at Scaffold_358:392159..395861+

spliced messenger RNA

>EsuBft985_3a-0001 ID=EsuBft985_3a-0001|Name=EsuBft985_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1644bp|location=Sequence derived from alignment at Scaffold_358:392159..395861+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCTCTCTGCTATCCGAGCCACGACGCAAACGAAAGCGCACCGC
CAGGGCGACTTCCTCCTTCAGGTTAAACTATGGCACCGCGGGGAAGAACG
AAGGGAAGCGCTGCGCTAGGTGCCTGCCCTGGATTGCCGGGGTGTTCGGC
CTCACCATGGCCGTCATTGTTTGCGTGAGAAACGGGTTCAAAGACTTGGC
CAGAGAGAAAGCGAGGGACGCGCGGCTCGGGAGGGCAGAGGTCCACGCAA
AGTCTCATCCTCTGGCGCTGCTCCTCGAGGGGCAGCACGATATCGGGTCC
CAGGCCGCTCGTTTCGCGGATCCGGATGGGCATTGCCTGTACCCCTCGCC
CGGCGCTGATCAACCGATCGCCGAGAGACTGGGCGTGTTCACCTGCGTGG
CGGACACGCCGTTCTTCCTGCGCGCCCTGGCGGAGTCGTTACGGTTCCGT
TTCTTGGTGGTCGTAGATGTCGGCAGCGTGTCTCTTCGTCATGGTCTTCC
TGCTTCGTCACCTGGGTTGGGCGTGGCGCTCACCGGACTAGAATCGGAGA
TATTTCCTGATGCACCGCAGCTACAGGCACGGCATCGGGTGCGCATTGGT
AAATATCTGGCGCAAATAACGGCCGGCGAGGATCCGCTCCCAAATAACGC
CGATCTGATCCTCATTGATGTACACGAGGAAGTGCTGTCTGCAGATGACT
GGGTGGACCTGTTTCGCTCCTTGATGCGGGTGCGAACGTGTGCCTTCATT
CTGATAGAGTCGAGTCGAGAACGCTCGGCGTTATCAGATGACGGGGTGAT
TGTCATCCGCGGCCCGCGGGAGCAAGAAGACGCGACAACGGGTGCGGGGA
GGAACGAGGGAGCGGGGTCGACAATTCGCGCTTGGTACGGAAGCGGACAA
TTGTGGGACGCGGTGACGGCTCTCGCGTGCGACCAAGTTGCCGCTGCTGC
TGCTGTGGGCAATTTAGACGGCGGCATCATCGTGCTACGACACGCAGCAC
CTGGCGAAATAGATGTAAAGACTGTAAAGGCGAGATGTGGCCGTAACCAC
CCAGGGCAACAAGGGGGGGGCGGCGTAGCAAAGGGGGCGGTGGCGGCAGC
CCCACCACACCCATTGCGATTCGAAAGACTTTTCCTATGGTCGACCGCAC
AGGGTGACATTACCACAGTTACGGCGATCGAGGCTGTTCAGGCAAAGTTT
GGCGGAGCTAACGCGGTGCGGAAATACGCCCGGCGAAGGTACGACCGATC
GGCGTGCTTGAACACTTCGAACACCTTCGCCACCGCCGAAGCTGCGGCTT
GGAGCGAACCATCGTTAGAAGCGGAAAGCATGGGCGGTGGGCACCTCCGC
GCCGAACCGCGGCACATCCGCCACAAGAGTTTGCCACAAAGCGGCGCCGC
ATCCCAGTGGCACTCCGCTGCACGAGCGTGCCTGGAGACGCACTTGGAGG
AGCACTCTCAGGATGTGCGAGCCGGGTTCGCGCTCGAGATGGTGCTTAGG
GCGACCGGGGGCAGCGGGGTCGACAGGCAGGTTGCCCGCCTTCGAACGAG
AATGACTGAAGAGAGTGGACCGGCGGGAGGCCTCCTTTGGCGAGCGCTGC
ACGCGCGCGCGGCCGGTGTGGCGGCAACGGGGCTGCTCCTTTAG

protein sequence of EsuBft985_3a-0001

>EsuBft985_3 ID=EsuBft985_3|Name=EsuBft985_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=547bp
MGSSLLSEPRRKRKRTARATSSFRLNYGTAGKNEGKRCARCLPWIAGVFG
LTMAVIVCVRNGFKDLAREKARDARLGRAEVHAKSHPLALLLEGQHDIGS
QAARFADPDGHCLYPSPGADQPIAERLGVFTCVADTPFFLRALAESLRFR
FLVVVDVGSVSLRHGLPASSPGLGVALTGLESEIFPDAPQLQARHRVRIG
KYLAQITAGEDPLPNNADLILIDVHEEVLSADDWVDLFRSLMRVRTCAFI
LIESSRERSALSDDGVIVIRGPREQEDATTGAGRNEGAGSTIRAWYGSGQ
LWDAVTALACDQVAAAAAVGNLDGGIIVLRHAAPGEIDVKTVKARCGRNH
PGQQGGGGVAKGAVAAAPPHPLRFERLFLWSTAQGDITTVTAIEAVQAKF
GGANAVRKYARRRYDRSACLNTSNTFATAEAAAWSEPSLEAESMGGGHLR
AEPRHIRHKSLPQSGAASQWHSAARACLETHLEEHSQDVRAGFALEMVLR
ATGGSGVDRQVARLRTRMTEESGPAGGLLWRALHARAAGVAATGLLL

mRNA from alignment at Scaffold_358:392159..395861+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft985_3a-0001 ID=EsuBft985_3a-0001|Name=EsuBft985_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3703bp|location=Sequence derived from alignment at Scaffold_358:392159..395861+ (Ectocarpus subulatus male Bft15b)
ATGGGCTCCTCTCTGCTATCCGAGCCACGACGCAAACGAAAGCGCACCGC
CAGGGCGACTTCCTCCTTCAGGTTAAACTATGGCACCGCGGGGAAGAACG
AAGGGAAGCGCTGCGCTAGGTGCCTGCCCTGGATTGCCGGGGTGTTCGGC
CTCACCATGGCCGTCATTGTTTGCGTGAGAAACGGGTTCAAAGACTTGGC
CAGAGAGAAAGCGAGGGACGCGCGGCTCGGGAGGGCAGAGGTCCACGCAA
AGTCTCATCCTCTGGCGCTGCTCCTCGAGGGGCAGCACGATATCGGGTCC
CAGGTACAGAGTAACCTGTACTATTAGCAGAGGTGCGCGTCGGCGGTGCA
ACTTGCTGAATTGACTTGGGTATTTGGCCATGTGTCTCACATAAAGGCCC
ACAACAAAGCATAATTCCGTTTCGCGTCTGTTTTCCAGGTCGTTGTCCCA
AGCAAGCCTAGGCCGCGGCAAGCCGCGGCGCTACAAGTAGATTGCTGTGC
ACCGTTAGCGCGAGGTTGCTGAAGGTGAAAAGCTACACGTTGCGTTCTAG
GTTGCTGCTGTACCGTTTGGGCGAAGCCGCGGCGCAAGCGGGGTGAGGGC
TAGGTTGTAGGGCGAGGTTGCTGTGCACGGTTAGCGCTAGGTTGCTGTGC
AGTGAAAGGCTAGGGTAGCACTGCTGGAGGTGTGCACACAGAACAAGATC
AACAAAGAGAATATTCCGAGAACCTTGTTCATCGAAAAATGGGCAAGCAT
TGCTGCTGTTGAGTTTTTGACTTCGACGCCGCAAACATGTGTCTCAGTGT
CGCATTACCCTTCAAGAGCATTCGTGTTTCGTCCTGGGATTGATCAACCT
ACGTTCGCAACCTACCCTACGGAGAGAAAGTTGCAGTCAACCCATCGTTC
CCATACTTCGTTGTTCGCCGCTTCAGTAAATAGGCCACGGGGGCGACCCA
GCTACGGTGTATGCGTTGACCTTGACAGATTCGCGTTCTACACCATGCAA
GTGGGTAACGAAACTACTTTTTTTTTGAGGGGGGGGGCAATTGGCTTGTG
ACCACGGAAGGCGACCGCGTCAGTTGGACCGTACGGACATTAGAAGGTTC
TGAGCGGAGACAGGGATGTTTTTTTTATTTGAGGACATCACCAACAATGT
CTTGCGTTCGTTATCTGGTATCCACGGTCGTTTTAACCATTTCCCGTTGT
GCCCTTCGCGTTTCCGCGGCTCCTCTATTCACCGCTGCTTTCTTTCTCCC
GACGCATCGATACCTTTCGACGGCGACCTGGATGGGGGACGTGGAACGCA
ATGGGGGCCTCTCTCTCTCTTTCGGCCAAACCAACCGACACCGACGGAAA
CTACCTCCAGGCCGCTCGTTTCGCGGATCCGGATGGGCATTGCCTGTACC
CCTCGCCCGGCGCTGATCAACCGATCGCCGAGAGACTGGGCGTGTTCACC
TGCGTGGCGGACACGCCGTTCTTCCTGCGCGCCCTGGCGGAGTCGTTACG
GTTCCGTTTCTTGGTGGTCGTAGATGTCGGCAGCGTGTCTCTTCGTCATG
GTCTTCCTGCTTCGTCACCTGGGTTGGGCGTGGCGCTCACCGGACTAGAA
TCGGAGATATTTCCTGATGCACCGCAGCTACAGGCACGGCATCGTTTAGG
GATAATCTAAGCCGATGGCATGCATTGTTTGCAATGCGATTCAGGGGTGC
GCATTGGTAAATATCTGGTAGAAACGGACCCACTGCTGTACGTCGAATAC
AAGACGGTTGTCCATGTGAATATGCAAGGGCGTCTTGGAGATGTACAAGA
ACAACTGCAGTGAAGCTAAGTAAGGAATGCTACAATACTCACTTTCTATT
CGGGTGTGGGCCCGTTCCGTGCACACAGACTCCTTCGGTGCATACTGCTT
TCGAAGCGTAGAGAAAGCGCTTTGGACGATCTTCTCGTTCTGTGCCGTTA
AACTTGCTTCTACTGCTGCTGCTTTCCCTGCATCATCCTGCATCAGGCGC
AAATAACGGCCGGCGAGGATCCGCTCCCAAATAACGCCGATCTGATCCTC
ATTGATGTACACGAGGAAGTGCTGTCTGCAGATGACTGGGTGGACCTGTT
TCGCTCCTTGATGCGGGTGCGAACGTGTGCCTTCATTCTGATAGAGTCGA
GTCGAGAACGCTCGGTGATTTTTTGCGATCGGCAAAAGTCACGAACGGTG
TCGCTGTGTATGGAGAGTCAAACAGAAGTAGTCGCTCGCAACACGCCCGA
TGTTTGAATGAGATAGTCACATGCTTGATCGAGGACGCGAAATTCTATTG
TTGTCCAAGGGCCACCGTCACGACGAACCAGTCCAAAACAGTCAAGGGGT
GGTAAACGTCGCCGCACTGCTGTGACCATGTCCTGTCCCGCAACCCCGAA
TGACATTTTGGTCCCATAGAAGCCGACGTTGTCCATATTGCCGCCCACGC
GACCTATGCTGCAGGTGAAAACCGTTTTATGTTCACTCATTGCCGACATC
GCATCCGTCTGGACCCTGCCAGGCGTTATCAGATGACGGGGTGATTGTCA
TCCGCGGCCCGCGGGAGCAAGAAGACGCGACAACGGGTGCGGGGAGGAAC
GAGGGAGCGGGGTCGACAATTCGCGCTTGGTACGGAAGCGGACAATTGTG
GGACGCGGTGACGGCTCTCGCGTGCGACCAAGTTGCCGCTGCTGCTGCTG
TGGGCAATTTAGACGGGTGAGCATGTCTCGTGCACCTTGGACATGACCCA
GGTGGATTTGACGTTTTTCAACATGAAACGAAGCGGAGTGCTACACGTGA
AGCTCGTATCCTTGGTCCCTCTTCGTGCTCCGGCTGGAGGGCCAATTTTC
GTTCCACAATGAACATCTACACGTTGTTTATATTCGGACTTAAGACTGTT
GCTTTATCGCATCACCCTCCCGTGTTTAAAAGACCTCGGGCCCTGCACGC
GTGCCCAGTTTGACCCTCTCCTAGGCATCGGTTGCCCCACTTTCTTGCAT
GTCCTCCTCGATGCGCGCCCATTAACCCAGCGGCATCATCGTGCTACGAC
ACGCAGCACCTGGCGAAATAGATGTAAAGACTGTAAAGGCGAGATGTGGC
CGTAACCACCCAGGGCAACAAGGGGGGGGCGGCGTAGCAAAGGGGGCGGT
GGCGGCAGCCCCACCACACCCATTGCGATTCGAAAGACTTTTCCTATGGT
CGACCGCACAGGGTGACATTACCACAGTTACGGCGATCGAGGCTGTTCAG
GCAAAGTTTGGCGGAGCTAACGCGGTGCGGAAATACGCCCGGCGAAGGTA
CGACCGATCGGCGTGCTTGAACACTTCGAACACCTTCGCCACCGCCGAAG
CTGCGGCTTGGAGCGAACCATCGTTAGAAGCGGAAAGCATGGGCGGTGGG
CACCTCCGCGCCGAACCGCGGCACATCCGCCACAAGAGTTTGCCACAAAG
CGGCGCCGCATCCCAGTGGCACTCCGCTGCACGAGCGTGCCTGGAGACGC
ACTTGGAGGAGCACTCTCAGGATGTGCGAGCCGGGTTCGCGCTCGAGATG
GTGCTTAGGGCGACCGGGGGCAGCGGGGTCGACAGGCAGGTTGCCCGCCT
TCGAACGAGAATGACTGAAGAGAGTGGACCGGCGGGAGGCCTCCTTTGGC
GAGCGCTGCACGCGCGCGCGGCCGGTGTGGCGGCAACGGGGCTGCTCCTT
TAG

Coding sequence (CDS) from alignment at Scaffold_358:392159..395861+

>EsuBft985_3a-0001 ID=EsuBft985_3a-0001|Name=EsuBft985_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1644bp|location=Sequence derived from alignment at Scaffold_358:392159..395861+ (Ectocarpus subulatus male Bft15b)
ATGGGCTCCTCTCTGCTATCCGAGCCACGACGCAAACGAAAGCGCACCGC
CAGGGCGACTTCCTCCTTCAGGTTAAACTATGGCACCGCGGGGAAGAACG
AAGGGAAGCGCTGCGCTAGGTGCCTGCCCTGGATTGCCGGGGTGTTCGGC
CTCACCATGGCCGTCATTGTTTGCGTGAGAAACGGGTTCAAAGACTTGGC
CAGAGAGAAAGCGAGGGACGCGCGGCTCGGGAGGGCAGAGGTCCACGCAA
AGTCTCATCCTCTGGCGCTGCTCCTCGAGGGGCAGCACGATATCGGGTCC
CAGGCCGCTCGTTTCGCGGATCCGGATGGGCATTGCCTGTACCCCTCGCC
CGGCGCTGATCAACCGATCGCCGAGAGACTGGGCGTGTTCACCTGCGTGG
CGGACACGCCGTTCTTCCTGCGCGCCCTGGCGGAGTCGTTACGGTTCCGT
TTCTTGGTGGTCGTAGATGTCGGCAGCGTGTCTCTTCGTCATGGTCTTCC
TGCTTCGTCACCTGGGTTGGGCGTGGCGCTCACCGGACTAGAATCGGAGA
TATTTCCTGATGCACCGCAGCTACAGGCACGGCATCGGGTGCGCATTGGT
AAATATCTGGCGCAAATAACGGCCGGCGAGGATCCGCTCCCAAATAACGC
CGATCTGATCCTCATTGATGTACACGAGGAAGTGCTGTCTGCAGATGACT
GGGTGGACCTGTTTCGCTCCTTGATGCGGGTGCGAACGTGTGCCTTCATT
CTGATAGAGTCGAGTCGAGAACGCTCGGCGTTATCAGATGACGGGGTGAT
TGTCATCCGCGGCCCGCGGGAGCAAGAAGACGCGACAACGGGTGCGGGGA
GGAACGAGGGAGCGGGGTCGACAATTCGCGCTTGGTACGGAAGCGGACAA
TTGTGGGACGCGGTGACGGCTCTCGCGTGCGACCAAGTTGCCGCTGCTGC
TGCTGTGGGCAATTTAGACGGCGGCATCATCGTGCTACGACACGCAGCAC
CTGGCGAAATAGATGTAAAGACTGTAAAGGCGAGATGTGGCCGTAACCAC
CCAGGGCAACAAGGGGGGGGCGGCGTAGCAAAGGGGGCGGTGGCGGCAGC
CCCACCACACCCATTGCGATTCGAAAGACTTTTCCTATGGTCGACCGCAC
AGGGTGACATTACCACAGTTACGGCGATCGAGGCTGTTCAGGCAAAGTTT
GGCGGAGCTAACGCGGTGCGGAAATACGCCCGGCGAAGGTACGACCGATC
GGCGTGCTTGAACACTTCGAACACCTTCGCCACCGCCGAAGCTGCGGCTT
GGAGCGAACCATCGTTAGAAGCGGAAAGCATGGGCGGTGGGCACCTCCGC
GCCGAACCGCGGCACATCCGCCACAAGAGTTTGCCACAAAGCGGCGCCGC
ATCCCAGTGGCACTCCGCTGCACGAGCGTGCCTGGAGACGCACTTGGAGG
AGCACTCTCAGGATGTGCGAGCCGGGTTCGCGCTCGAGATGGTGCTTAGG
GCGACCGGGGGCAGCGGGGTCGACAGGCAGGTTGCCCGCCTTCGAACGAG
AATGACTGAAGAGAGTGGACCGGCGGGAGGCCTCCTTTGGCGAGCGCTGC
ACGCGCGCGCGGCCGGTGTGGCGGCAACGGGGCTGCTCCTTTAG