EsuBft984_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft984_9a-0001
Unique NameEsuBft984_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:297323..297981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FH54
ProteomeIdEsuBft984_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7FH54|-
Length60
Hectar predicted targeting categoryother localisation
Evalue3.11e-11
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft984_9aEsuBft984_9aEctocarpus subulatus male Bft15bgeneScaffold_339 297323..297981 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_9a-0001-exonagat-exon-15102Ectocarpus subulatus male Bft15bexonScaffold_339 297323..297704 -
EsuBft984_9a-0001-exonEsuBft984_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 297764..297981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_9a-0001-cdsEsuBft984_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 297323..297704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_9a-0001EsuBft984_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 297323..297981 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft984_9a-0001 ID=EsuBft984_9a-0001|Name=EsuBft984_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=600bp|location=Sequence derived from alignment at Scaffold_339:297323..297981- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCATGCGCTCAATTTCGTTTGGAATCGTGTTTTTCAGCAGTCATC
GCGTACATCAGCCAGGTATCGTGGCCAGGGACGACGATGCTGCCAGGAGA
ACTGCTGTGCAAAACGCCCATCGTATGGTGAGGCCCACGGCAAGAAAGCA
GAGTTCTGCTCGCAGCACATGCAGCCGGGTATGGTCAATGTCGTGAGCAA
GAGGTGCGGCCATCCAGGCATGCGCAACGGGGCATGGTCTCAGTTCGTAG
TAGGAGGTGCGACCATCCAGGCTGCGAGAAATCCCCGTCGTATGGGAAAG
ACGGCAGCAAGACGTGAGTTTTGCTCTCAGCACGCCAAGCCAGGAATGAC
AAACATCATGACCAAGAGGTGCGGCCATCCAGGGTGCATCAAGCACCGAA
CATATGGTAAAGACGGCAGCAGTAAGGCGGAGTTCTGCTCTCAGCACGCG
CAGCAGGATATGTCGTTAACAAGAGGTGCTCTCAGCCATCCAGGCTGCAT
CAACCAACCATCATTTGGAAAGGACGGTAGCAAGAATATCGAGTTCTGCT
CTCAGCACTCCAAAGCAGGAATGATCAATCTGCGGAAGGCCGCGTGCTGA
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protein sequence of EsuBft984_9a-0001

>EsuBft984_9 ID=EsuBft984_9|Name=EsuBft984_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=199bp
MCHALNFVWNRVFQQSSRTSARYRGQGRRCCQENCCAKRPSYGEAHGKKA
EFCSQHMQPGMVNVVSKRCGHPGMRNGAWSQFVVGGATIQAARNPRRMGK
TAARREFCSQHAKPGMTNIMTKRCGHPGCIKHRTYGKDGSSKAEFCSQHA
QQDMSLTRGALSHPGCINQPSFGKDGSKNIEFCSQHSKAGMINLRKAAC
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mRNA from alignment at Scaffold_339:297323..297981-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft984_9a-0001 ID=EsuBft984_9a-0001|Name=EsuBft984_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=659bp|location=Sequence derived from alignment at Scaffold_339:297323..297981- (Ectocarpus subulatus male Bft15b)
ATGTGTCATGCGCTCAATTTCGTTTGGAATCGTGTTTTTCAGCAGTCATC
GCGTACATCAGCCAGGTATCGTGGCCAGGGACGACGATGCTGCCAGGAGA
ACTGCTGTGCAAAACGCCCATCGTATGGTGAGGCCCACGGCAAGAAAGCA
GAGTTCTGCTCGCAGCACATGCAGCCGGGTATGGTCAATGTCGTGAGCAA
GAGGTGCGGCCATCCAGGGTGCATCAAGATATCATGATGGAAACGATGGC
AGCATGAAGGCGGAGTTCTGCTCTCAGCATGCGCAACGGGGCATGGTCTC
AGTTCGTAGTAGGAGGTGCGACCATCCAGGCTGCGAGAAATCCCCGTCGT
ATGGGAAAGACGGCAGCAAGACGTGAGTTTTGCTCTCAGCACGCCAAGCC
AGGAATGACAAACATCATGACCAAGAGGTGCGGCCATCCAGGGTGCATCA
AGCACCGAACATATGGTAAAGACGGCAGCAGTAAGGCGGAGTTCTGCTCT
CAGCACGCGCAGCAGGATATGTCGTTAACAAGAGGTGCTCTCAGCCATCC
AGGCTGCATCAACCAACCATCATTTGGAAAGGACGGTAGCAAGAATATCG
AGTTCTGCTCTCAGCACTCCAAAGCAGGAATGATCAATCTGCGGAAGGCC
GCGTGCTGA
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Coding sequence (CDS) from alignment at Scaffold_339:297323..297981-

>EsuBft984_9a-0001 ID=EsuBft984_9a-0001|Name=EsuBft984_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=600bp|location=Sequence derived from alignment at Scaffold_339:297323..297981- (Ectocarpus subulatus male Bft15b)
ATGTGTCATGCGCTCAATTTCGTTTGGAATCGTGTTTTTCAGCAGTCATC
GCGTACATCAGCCAGGTATCGTGGCCAGGGACGACGATGCTGCCAGGAGA
ACTGCTGTGCAAAACGCCCATCGTATGGTGAGGCCCACGGCAAGAAAGCA
GAGTTCTGCTCGCAGCACATGCAGCCGGGTATGGTCAATGTCGTGAGCAA
GAGGTGCGGCCATCCAGGCATGCGCAACGGGGCATGGTCTCAGTTCGTAG
TAGGAGGTGCGACCATCCAGGCTGCGAGAAATCCCCGTCGTATGGGAAAG
ACGGCAGCAAGACGTGAGTTTTGCTCTCAGCACGCCAAGCCAGGAATGAC
AAACATCATGACCAAGAGGTGCGGCCATCCAGGGTGCATCAAGCACCGAA
CATATGGTAAAGACGGCAGCAGTAAGGCGGAGTTCTGCTCTCAGCACGCG
CAGCAGGATATGTCGTTAACAAGAGGTGCTCTCAGCCATCCAGGCTGCAT
CAACCAACCATCATTTGGAAAGGACGGTAGCAAGAATATCGAGTTCTGCT
CTCAGCACTCCAAAGCAGGAATGATCAATCTGCGGAAGGCCGCGTGCTGA
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