EsuBft984_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft984_7a-0001
Unique NameEsuBft984_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:288060..288587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRP1
ProteomeIdEsuBft984_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length52
Hectar predicted targeting categoryother localisation
Evalue7.87e-60
EggNOG OGs2C4QK@1|root,2SCXU@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft984_7aEsuBft984_7aEctocarpus subulatus male Bft15bgeneScaffold_339 288060..288587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_7a-0001-exonEsuBft984_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 288060..288587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_7a-0001-cdsEsuBft984_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 288060..288587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_7a-0001EsuBft984_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 288060..288587 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft984_7a-0001 ID=EsuBft984_7a-0001|Name=EsuBft984_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=528bp|location=Sequence derived from alignment at Scaffold_339:288060..288587- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCCATTCTTGACCACTTCGTGTATCATTTACATCTCGCCCACCG
GCATTTGTTGCGGTTGGGTTGGAACACATACCCTCACTTCCTTTTTTTTC
TTGCCTCATTCTTCGCATTATCGACATGCCGACTAACGCTCACACCGGTG
GGGACGAGGTCACTCCAACAGTATACTCCACGCCAGGTCCCTAACGCGTA
CATCGAGGCGCTCGGCAAGGGCACGGGGCTGTCGGGGTGGTGCCACATCT
CGCCTGGGTTCTACGTGCGGTACTGCCTCAGCGAGAGGTTGAGAGACCTG
GGCAGGATGATCGAAATCCTGAGAACGGTCTCGCTGGAATCGCTCAGCGA
CAGTGATCTGAGAGAGGCCTGCGACGCTAGGGCTATCAACGTGGGGAACC
GGCTCGGGGGGGACCGTGAACCGCAAGACCTGCGGAAGCCGCTTGGGGGG
TGGCTTGACCTTACCTCGCCTGAGGTCTCCGCTGGAAGCAAGCTTGACCC
TGACAGTCTTCCTGCCGGATCGAACTAG
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protein sequence of EsuBft984_7a-0001

>EsuBft984_7 ID=EsuBft984_7|Name=EsuBft984_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=175bp
MHSILDHFVYHLHLAHRHLLRLGWNTYPHFLFFLASFFALSTCRLTLTPV
GTRSLQQYTPRQVPNAYIEALGKGTGLSGWCHISPGFYVRYCLSERLRDL
GRMIEILRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKPLGG
WLDLTSPEVSAGSKLDPDSLPAGSN
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mRNA from alignment at Scaffold_339:288060..288587-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft984_7a-0001 ID=EsuBft984_7a-0001|Name=EsuBft984_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=528bp|location=Sequence derived from alignment at Scaffold_339:288060..288587- (Ectocarpus subulatus male Bft15b)
ATGCATTCCATTCTTGACCACTTCGTGTATCATTTACATCTCGCCCACCG
GCATTTGTTGCGGTTGGGTTGGAACACATACCCTCACTTCCTTTTTTTTC
TTGCCTCATTCTTCGCATTATCGACATGCCGACTAACGCTCACACCGGTG
GGGACGAGGTCACTCCAACAGTATACTCCACGCCAGGTCCCTAACGCGTA
CATCGAGGCGCTCGGCAAGGGCACGGGGCTGTCGGGGTGGTGCCACATCT
CGCCTGGGTTCTACGTGCGGTACTGCCTCAGCGAGAGGTTGAGAGACCTG
GGCAGGATGATCGAAATCCTGAGAACGGTCTCGCTGGAATCGCTCAGCGA
CAGTGATCTGAGAGAGGCCTGCGACGCTAGGGCTATCAACGTGGGGAACC
GGCTCGGGGGGGACCGTGAACCGCAAGACCTGCGGAAGCCGCTTGGGGGG
TGGCTTGACCTTACCTCGCCTGAGGTCTCCGCTGGAAGCAAGCTTGACCC
TGACAGTCTTCCTGCCGGATCGAACTAG
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Coding sequence (CDS) from alignment at Scaffold_339:288060..288587-

>EsuBft984_7a-0001 ID=EsuBft984_7a-0001|Name=EsuBft984_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=528bp|location=Sequence derived from alignment at Scaffold_339:288060..288587- (Ectocarpus subulatus male Bft15b)
ATGCATTCCATTCTTGACCACTTCGTGTATCATTTACATCTCGCCCACCG
GCATTTGTTGCGGTTGGGTTGGAACACATACCCTCACTTCCTTTTTTTTC
TTGCCTCATTCTTCGCATTATCGACATGCCGACTAACGCTCACACCGGTG
GGGACGAGGTCACTCCAACAGTATACTCCACGCCAGGTCCCTAACGCGTA
CATCGAGGCGCTCGGCAAGGGCACGGGGCTGTCGGGGTGGTGCCACATCT
CGCCTGGGTTCTACGTGCGGTACTGCCTCAGCGAGAGGTTGAGAGACCTG
GGCAGGATGATCGAAATCCTGAGAACGGTCTCGCTGGAATCGCTCAGCGA
CAGTGATCTGAGAGAGGCCTGCGACGCTAGGGCTATCAACGTGGGGAACC
GGCTCGGGGGGGACCGTGAACCGCAAGACCTGCGGAAGCCGCTTGGGGGG
TGGCTTGACCTTACCTCGCCTGAGGTCTCCGCTGGAAGCAAGCTTGACCC
TGACAGTCTTCCTGCCGGATCGAACTAG
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