EsuBft984_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft984_5a-0001
Unique NameEsuBft984_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:268037..268992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft984_5
Protein domainsIPR001584
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length89
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft984_5aEsuBft984_5aEctocarpus subulatus male Bft15bgeneScaffold_339 268037..268992 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_5a-0001-exonEsuBft984_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 268037..268692 +
EsuBft984_5a-0001-exonagat-exon-15095Ectocarpus subulatus male Bft15bexonScaffold_339 268758..268992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_5a-0001-cdsEsuBft984_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 268037..268692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_5a-0001EsuBft984_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 268037..268992 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft984_5a-0001 ID=EsuBft984_5a-0001|Name=EsuBft984_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=891bp|location=Sequence derived from alignment at Scaffold_339:268037..268992+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGGCGACGAGTTCACCCGCTCCGCGTTCACCTCGTTCTGCGA
CGCTGCTGGCATTCGGTGCGAGTACACCGCGCCCAACACCTCCAAGCAAA
ACGCGCTGGTCGAGAGCGCCATATGGCGCGCCATGAAGGGGGGTTACGCC
GCGCGCCGCCACATCCTCACCATAGGCCACGTCGACCTCTTCTCCATCCC
CAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGA
TATCCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACCTGGGCTGGATG
TCGCCGTTCAAGGCGTTCTTCAGCCGGAAGCCGCCCCTCACCGTCGTCCC
TTTTTTCCCGGAGGAGGGGATGATGCGCGTGAAGCGGGCCACCAAGGCGG
ACGTCCAATCCGCGCAGTGCTTCTACCTGCACGGCGGCAACAACCACTCG
ACGTCTACCGCAGTCGTTCTTCGCGCTGACACCGGTCACCTCGCCCTCAC
CAACAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCTGGCGCCGGTGC
CGAGTATCGGGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCC
GCCGTATCTGCGGCCGATGCCGCACCGCCGCCGCCCCCGCCATCAAGGAC
GTACACGATCCCAAGCCCCGTCGCCGATCTCCGACGCCCCATCATCAGAC
CCATCGTCGACCGCAGCCACGCCGCCCCGTTCGACCCCGGGCCTGCCGCC
GCCGCCGCCGCAGCCCGCCAGCGCCGCCGCCCGCGCTCCTCCGCACCCGC
CGCTTTCGAAACGAGCCGTCAAGGAGTTGGGACGAGAGGACACGAGGGTT
CACGGACGCACGTGCGGCGATGGAGTGCGGTTCATGTATGA
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protein sequence of EsuBft984_5a-0001

>EsuBft984_5 ID=EsuBft984_5|Name=EsuBft984_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=296bp
MDNGDEFTRSAFTSFCDAAGIRCEYTAPNTSKQNALVESAIWRAMKGGYA
ARRHILTIGHVDLFSIPNVGVNGHRLWLASALWISACFNRSATKANLGWM
SPFKAFFSRKPPLTVVPFFPEEGMMRVKRATKADVQSAQCFYLHGGNNHS
TSTAVVLRADTGHLALTNNVVWVNRRAGALAPVPSIGGGSSVTAAPSPAA
AVSAADAAPPPPPPSRTYTIPSPVADLRRPIIRPIVDRSHAAPFDPGPAA
AAAAARQRRRPRSSAPAAFETSRQGVGTRGHEGSRTHVRRWSAVHV
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mRNA from alignment at Scaffold_339:268037..268992+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft984_5a-0001 ID=EsuBft984_5a-0001|Name=EsuBft984_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=956bp|location=Sequence derived from alignment at Scaffold_339:268037..268992+ (Ectocarpus subulatus male Bft15b)
ATGGACAACGGCGACGAGTTCACCCGCTCCGCGTTCACCTCGTTCTGCGA
CGCTGCTGGCATTCGGTGCGAGTACACCGCGCCCAACACCTCCAAGCAAA
ACGCGCTGGTCGAGAGCGCCATATGGCGCGCCATGAAGGGGGGTTACGCC
GCGCGCCGCCACATCCTCACCATAGGCCACGTCGACCTCTTCTCCATCCC
CAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGA
TATCCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACCTGGGCTGGATG
TCGCCGTTCAAGGCGTTCTTCAGCCGGAAGCCGCCCCTCACCGTCGTCCC
TTTTTTCCCGGAGGAGGGGATGATGCGCGTGAAGCGGGCCACCAAGGCGG
ACGTCCAATCCGCGCAGTGCTTCTACCTGCACGGCGGCAACAACCACTCG
ACGTCTACCGCAGTCGTTCTTCGCGCTGACACCGGTCACCTCGCCCTCAC
CAACAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCTGGCGCCGGTGC
CGAGTATCGGGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCC
GCCGTATCTGCGGCCGATGCCGCACCGCCGCCGCCCCCGCCATCAAGGAC
GTACACGTACACCCCGCCTACTCCAGCGACCACCGCAACGCTACCGCCCG
CTTGTCCGCCGATCTTCACAGGATCCCAAGCCCCGTCGCCGATCTCCGAC
GCCCCATCATCAGACCCATCGTCGACCGCAGCCACGCCGCCCCGTTCGAC
CCCGGGCCTGCCGCCGCCGCCGCCGCAGCCCGCCAGCGCCGCCGCCCGCG
CTCCTCCGCACCCGCCGCTTTCGAAACGAGCCGTCAAGGAGTTGGGACGA
GAGGACACGAGGGTTCACGGACGCACGTGCGGCGATGGAGTGCGGTTCAT
GTATGA
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Coding sequence (CDS) from alignment at Scaffold_339:268037..268992+

>EsuBft984_5a-0001 ID=EsuBft984_5a-0001|Name=EsuBft984_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=891bp|location=Sequence derived from alignment at Scaffold_339:268037..268992+ (Ectocarpus subulatus male Bft15b)
ATGGACAACGGCGACGAGTTCACCCGCTCCGCGTTCACCTCGTTCTGCGA
CGCTGCTGGCATTCGGTGCGAGTACACCGCGCCCAACACCTCCAAGCAAA
ACGCGCTGGTCGAGAGCGCCATATGGCGCGCCATGAAGGGGGGTTACGCC
GCGCGCCGCCACATCCTCACCATAGGCCACGTCGACCTCTTCTCCATCCC
CAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGA
TATCCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACCTGGGCTGGATG
TCGCCGTTCAAGGCGTTCTTCAGCCGGAAGCCGCCCCTCACCGTCGTCCC
TTTTTTCCCGGAGGAGGGGATGATGCGCGTGAAGCGGGCCACCAAGGCGG
ACGTCCAATCCGCGCAGTGCTTCTACCTGCACGGCGGCAACAACCACTCG
ACGTCTACCGCAGTCGTTCTTCGCGCTGACACCGGTCACCTCGCCCTCAC
CAACAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCTGGCGCCGGTGC
CGAGTATCGGGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCC
GCCGTATCTGCGGCCGATGCCGCACCGCCGCCGCCCCCGCCATCAAGGAC
GTACACGATCCCAAGCCCCGTCGCCGATCTCCGACGCCCCATCATCAGAC
CCATCGTCGACCGCAGCCACGCCGCCCCGTTCGACCCCGGGCCTGCCGCC
GCCGCCGCCGCAGCCCGCCAGCGCCGCCGCCCGCGCTCCTCCGCACCCGC
CGCTTTCGAAACGAGCCGTCAAGGAGTTGGGACGAGAGGACACGAGGGTT
CACGGACGCACGTGCGGCGATGGAGTGCGGTTCATGTATGA
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