EsuBft984_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft984_2a-0001
Unique Name	EsuBft984_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_339	contig	Scaffold_339:241676..243644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft984_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	111
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft984_2a	EsuBft984_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_339 241676..243644 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft984_2a-0001	EsuBft984_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_339 241676..242248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft984_2a-0001-exon	EsuBft984_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 241676..242382 +
EsuBft984_2a-0001-exon	agat-exon-15087	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 242735..243052 +
EsuBft984_2a-0001-exon	agat-exon-15086	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 243555..243644 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft984_2a-0001-cds	EsuBft984_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_339 241676..242248 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft984_2a-0001-exon	agat-three_prime_utr-23779	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 242249..242382 +
EsuBft984_2a-0001-exon	agat-three_prime_utr-23780	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 242735..243052 +
EsuBft984_2a-0001-exon	agat-three_prime_utr-23781	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 243555..243644 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_339:241676..243644+
coding sequence from alignment at Scaffold_339:241676..243644+

spliced messenger RNA

>EsuBft984_2a-0001 ID=EsuBft984_2a-0001|Name=EsuBft984_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1115bp|location=Sequence derived from alignment at Scaffold_339:241676..243644+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGCTAATGTCGCTAGTGGAAGATACCATGAAGGCAAGCAAGAA
GGAGGAGCCAGCTGGCACCATGGAGGGTGCCGCTGATCGCGGCGATGCTA
GGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTTCCCCAAG
AGGTGAGGGTAGCCGCTGCTCACAACCAAGGTTATAGAAGTGCCGTGGGA
GATGGTGGTGGTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGAC
GGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAATGGCGCA
AACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAA
CAGCGGCAAGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAGCAAG
TAGAGCTCGCATTCCACGCGTGAAACTTCGTGTCTCACGCGTTGAAAGAA
AAAGGTCACAAAATCATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCG
TGAGCTCAAGACTATACACGACCCTGAATGATCTGTACAGCCGTCAGAGA
ACCTCAAAGAACCTCAAGTCTCTGATGTCGACCAAGATCTCTAGAGGTGA
AAACCCCCAAAACGCCTTAAATGAGATGCTCCAAACCGCAAAGTCCTTAA
CCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCCTG
GATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGACACGC
GAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGAATACA
AGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGGGC
GCAGAGCAAGCGTACTTCGCCGACGGGCCGCAGGGAGCGGTACTCAAGTA
GGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCGCAGCAGC
AGTCGTGGCCGCGGC

protein sequence of EsuBft984_2a-0001

>EsuBft984_2 ID=EsuBft984_2|Name=EsuBft984_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAPW
TGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQGYRSAVG
DGGGAVGFGYGATTPATGYQSVRYTSPPFSGKSKDFNEWLNDFRMAANGA
NLLEQFEESGSLEIPVNSGKSKFSLSQQYRSEQVELAFHA

mRNA from alignment at Scaffold_339:241676..243644+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft984_2a-0001 ID=EsuBft984_2a-0001|Name=EsuBft984_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1969bp|location=Sequence derived from alignment at Scaffold_339:241676..243644+ (Ectocarpus subulatus male Bft15b)
ATGAGCCAGCTAATGTCGCTAGTGGAAGATACCATGAAGGCAAGCAAGAA
GGAGGAGCCAGCTGGCACCATGGAGGGTGCCGCTGATCGCGGCGATGCTA
GGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTTCCCCAAG
AGGTGAGGGTAGCCGCTGCTCACAACCAAGGTTATAGAAGTGCCGTGGGA
GATGGTGGTGGTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGAC
GGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAATGGCGCA
AACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAA
CAGCGGCAAGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAGCAAG
TAGAGCTCGCATTCCACGCGTGAAACTTCGTGTCTCACGCGTTGAAAGAA
AAAGGTCACAAAATCATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCG
TGAGCTCAAGACTATACACGACCCTGAATGATCTGTACAGCCGTCAGAGA
ACCTCAAGTCNNNNNNNNNNNNNNNNNNNTTTCCGCATGGCAGCTAATGG
CGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGGGCTTGGAGATCCCCG
TCAACAGCGGCAAGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAG
CAAGTAGAGCTCGCATTCCACGCGTGAAACTTCGTGTCTCACGCGTTGAA
AGAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCA
GGGAGCTCTTCGTGAGCTCAAGACTATACACGACCCTGAATCATCTGTAC
AGCCGTCAGAGAACCTCAAGTCTCTGATGTCGACCAAGATCTCTAGAGGT
GAAAACCCCCAAAACGCCTTAAATGAGATGCTCCAAACCGCAAAGTCCTT
AACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCC
TGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGACAC
GCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGAATA
CAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGG
GCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCGGTAC
TCAAGTAGGAATCAGGGGCAAGGCCGCTCAGGCGGATCCGGAGGAGTCGA
GGAGAGCAAGGGAGGCAGCAGTGGAGGCGCCGGTGGCGGCGGTGGCGGGG
GCTATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAA
GCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCGTGGTGTGCGCG
CTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAGGAGGCCG
TCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGNNNNNNNNNNNNNNN
NNNNNNNTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGACACGAG
AAGGAGTAGGCGCGGACCGGTGTGCTAAAGGAAGTAATGATCGAATACAA
GGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGGGCG
CAGAGCAAGCGTACGTCGCCGACGGTGAGGGCCGCAGGGAGCGGTACTCA
AGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCGCAG
CAGCAGTCGTGGCCGCGGC

Coding sequence (CDS) from alignment at Scaffold_339:241676..243644+

>EsuBft984_2a-0001 ID=EsuBft984_2a-0001|Name=EsuBft984_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=573bp|location=Sequence derived from alignment at Scaffold_339:241676..243644+ (Ectocarpus subulatus male Bft15b)
ATGAGCCAGCTAATGTCGCTAGTGGAAGATACCATGAAGGCAAGCAAGAA
GGAGGAGCCAGCTGGCACCATGGAGGGTGCCGCTGATCGCGGCGATGCTA
GGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTTCCCCAAG
AGGTGAGGGTAGCCGCTGCTCACAACCAAGGTTATAGAAGTGCCGTGGGA
GATGGTGGTGGTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGAC
GGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAATGGCGCA
AACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAA
CAGCGGCAAGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAGCAAG
TAGAGCTCGCATTCCACGCGTGA