EsuBft984_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft984_10a-0001
Unique NameEsuBft984_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:305259..305983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft984_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length30
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft984_10aEsuBft984_10aEctocarpus subulatus male Bft15bgeneScaffold_339 305259..305983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_10a-0001-exonagat-exon-15103Ectocarpus subulatus male Bft15bexonScaffold_339 305259..305267 +
EsuBft984_10a-0001-exonEsuBft984_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 305685..305983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_10a-0001-cdsEsuBft984_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 305259..305267 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_10a-0001-exonagat-three_prime_utr-23778Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 305745..305983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_10a-0001EsuBft984_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 305259..305744 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft984_10a-0001 ID=EsuBft984_10a-0001|Name=EsuBft984_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=308bp|location=Sequence derived from alignment at Scaffold_339:305259..305983+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGGGATATCGGGGTCTTGGCACAGGGTGTGCGATTACAAAAGCGG
GTTCCGAATGGTTTGCTAGATTATCGCACAGGTATCGTCGTTTCCGCATA
CTGTGTGGACACGCCGATATGTGCGGTGAGGTTTGGCGGTAGGTGATACC
CTTTCATCAGCATCTCGTGCTGGAAGTTCCGGATACTGTGGGAGCTTGAA
TCGCGTGCTCCACTGCTACTGTTGCCCTTGGCACCATGACGATGTTCAAG
AGTGTGGTATTTGTACTGTTCGTTCTCTTCTTTTCGTTCTGAAGAATCAA
GATCGGCA
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protein sequence of EsuBft984_10a-0001

>EsuBft984_10 ID=EsuBft984_10|Name=EsuBft984_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=22bp
MRGISGSWHRVCDYKSGFRMVC
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mRNA from alignment at Scaffold_339:305259..305983+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft984_10a-0001 ID=EsuBft984_10a-0001|Name=EsuBft984_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=725bp|location=Sequence derived from alignment at Scaffold_339:305259..305983+ (Ectocarpus subulatus male Bft15b)
ATGCGGGGGGTATGTATGGCCACGAAAGCGGGATGTGGACGTGGGGGGGG
TAACCGGTAGACGAAAGCTAACTTTACCACGGCTCTAGCACCAGCGCACA
GCACGTGTCGTATCAAGTGTGTGATGTTTGAACTCTGTTTCCGCCCGTGG
TCGCTCACGTCTGACTACAGTTACATCCATCAGCTGTCGCTACAACGAGC
GACAGCTAGTATATCTTTTTGGCGACAGTCCCCCCATTTTTGGTGGCGAG
ACGTGCTACTGTACACTCTTCAGTGTATTTTTTCGTACAACTGCAACCAC
CCAGGGTCACATTGGAGGGGGTAAAACACCAGGCTTTGTTTTTCTTGTAA
CACATGACGTTCCCCCTTTCTCCTGTGGCGCGTACTGAATTTTGTTTGAA
TACCGTAACCATCGGGGTCTCGGCAGATATCGGGGTCTTGGCACAGGGTG
TGCGATTACAAAAGCGGGTTCCGAATGGTTTGCTAGATTATCGCACAGGT
ATCGTCGTTTCCGCATACTGTGTGGACACGCCGATATGTGCGGTGAGGTT
TGGCGGTAGGTGATACCCTTTCATCAGCATCTCGTGCTGGAAGTTCCGGA
TACTGTGGGAGCTTGAATCGCGTGCTCCACTGCTACTGTTGCCCTTGGCA
CCATGACGATGTTCAAGAGTGTGGTATTTGTACTGTTCGTTCTCTTCTTT
TCGTTCTGAAGAATCAAGATCGGCA
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Coding sequence (CDS) from alignment at Scaffold_339:305259..305983+

>EsuBft984_10a-0001 ID=EsuBft984_10a-0001|Name=EsuBft984_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=69bp|location=Sequence derived from alignment at Scaffold_339:305259..305983+ (Ectocarpus subulatus male Bft15b)
ATGCGGGGGATATCGGGGTCTTGGCACAGGGTGTGCGATTACAAAAGCGG
GTTCCGAATGGTTTGCTAG
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