Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft981_4 |
| Protein domains | IPR024630 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 299 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Stc1 domain |
| Ec32 ortholog | Ec-18_000880.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft981_4a-0001 ID=EsuBft981_4a-0001|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2991bp|location=Sequence derived from alignment at Scaffold_347:362232..365885+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCAACACCATCCGCTAGATTCCTGCGCCCGCGGCCATCGTCTCAAGCCCC
CGCATCGTCAACGCTTCCGTGAGCCTCCCCCTGGAGATAGGGCTTGTTCA
CCGCACTAGAGCTGCAGCACCCGTGGAAGTAGCATCAGCAGCGCTAGCAC
GCGAGGGGCAAACATGCAGGGCGCATCGGCGAGTGGCGCCATCACGTGTA
CCGTCTGCGGGGAGCGAAAGCCTGCCTCGGAGTACTCTCGCAACCAGCTG
GCCAGGTCCGCAAGGGAGGTGTGCCAGGTGTGCCTCATGAGTGAGGGAAC
GGTCGCGGCGCCCCCTTCTCGGGTGGCGCCCGCCGCGGGCGAGGGCGTAG
TCCGCTGCGTTGCTTGCTGCCAAGTGAAAACTACCTCGTCGTTCGGCATC
AATCAACTCCGCCGCCGCGCCGGCATCGAGCGCTGCATGCTCTGCGTGGA
GAAGGACCTGGGGTCGGTGGTGCTCTGCCACGCTTGCAACACGCACAAGC
CCTTCACGGACTTCAGCAAGAAGCAGCTGGCGTGCAAGCCCGGCTCGGAG
AGGTGCAAGGTTTGCATCGAGAATGCGTCTCGGTGATGGGACTGCGGCGG
TCGGCGGCGGGAGTGCCGAAAGGCCCGAGAGAGAAGAGAGGGGGGGGCTC
CAGTGAATCGAAGGGTACGCCGGTGAGCGAGAACGTTGGCGGAAAAAGGC
GTTCGTAGCCGTGAGCGACTCTACCCCTCGACTGCACTGACAGAGGAGGC
TGTGAAGCCGAACTACTCTATCTAGACCTTTTGATCCCTTGGAGGGGGGG
AAGACTTTGGATCGAATGGAGTGTGAGAGGAAGTACGGCAACATGGAATG
CATGGTTGCGCCGAACCCTTCGTACTGCCGCCGTTCATACGTTCTTGTGC
CCTTCTGTGCGTCGTTTGGCCCCCATCTTCGTCGTGGAAAATGGGAAAGA
GAACGAGAGAGGGAGGGAGGGAGGGATGCCACACGATTGCGAAGACAGAC
AAGGAGAATAGATGAGAGAAAGACGGGTGGAGGAGATACAGAGACAAAGA
AGGAGTGAGGGGGGGAGAAAGAGGCGGGTAGGGGCAGAGACAGAGAATAA
GGCATAGCGAGAGAGAGAGAGGCAAACAAAAATGAAACGGACAGACCGGG
GTTGGATGGTGGAGCTTCACCCGAAGTTTCCATTGCCAAATTTCAGATAC
AACAATTACTGACGAGCTTTTGATTTACATAATTTGGTACATATTATTCT
GTTGGAGCCTCGTCGCAGGATGGTTGGGACGGGGGGCAGCATCAAAAGTA
CTGATTTTTACCATTCGTTCGGTAGGCGGGAGGCTGGGACGTGTCTAGGG
TGTCCAGCGAAAATACCCAAATGCTTCTCATTTTGTTTTCGTATCAAAGT
TCTAGATGCGTTGTTCCGAAAGACATGTGCGTGGAGTAGTACGACGTTGG
ATGTTGGACATATTGTGTGTTTCGGGTTCTGAGCAAATGTAGACTACTCC
AAGTAGAGAGAAGCTTTTGTTTTTCGTGTGTCGCGCCTATCGACGAAAGG
ATTGGGCCAGTCCGCGTCAAGATTTCAACAGCGAATATTTGCGCGGCTGG
ATGGAGGGAGTGCGATTGGCTCTGTGGTTGTGCTGATGTATAGGGTGAGT
GATAAACATGCCAGCGTGTACGGCGTGTGTCCCACTTGTTGTTCCACGAA
TTGCGTTTTCATATCGGCGGGGTGTTGGTCGTGGTTGTGGTTAAAGTCAG
CTCAGCAAATATTTTTACGCCGTCGGCTGTCGGCACCCATGTGGCATTAC
GTGTTTAGCCGAGTTTGTGGCGCTTGAGGCACATGGGGGGGGGGGTGGCG
GACAGCAGTGGAGGATTATCGATTGAGGGGGGGGGAGGCGTGTCAAGCGT
GGCGCATCTATCCTAGAGAAGATAGAGGGGCTCCCATTGGTCAGCATTCA
TGCATGACCCAACGGAGGAACATTGCTCTGGGCTGGTCGGTGCATCAGTT
CGAACCGTGGTCGCTGTACACGAATTGCGGTGGTAATGATTTGTCTCCAG
TTTTAGGTGATTGCGTTTTTCTTCATAGCTTTACGTCAGAAACAATTTTC
AGCGAGGGGGGGCGGGCGATAGGAGCTGCGCCAGAGGCGAGTCGATTGCG
GTGACGCCGTCCACGGAACTTTCCATGGAACATTCCTGTGGAACATGCCT
AACCCGTAGGAGCGGCAGTGGTGAGGTGGGGGCGGGGACTGTGCATGGTG
AAAGCAAGGGGATGGCAGGCAATTGCCATTTTCGTCGTAGAGCCACGTGC
GAAAATTTCTGTGCATGGTCGACGTTTCCCGTGTGGAAAAGGGGCGGGTC
CGTCAATATTTTACGGTTGACTTCCCCATTTTTTGTATAGAATGGAAGAT
GTGTGTGGGCCTCAGGTGTCCCCCGCTTGGCGTTTGGGTTCGATTGTTTG
GTCGATATTTACACAGGACGCCTTGTGCAAGGGAGGAGGGGCTTTTCGGT
GATGAGGGGGTTGGCATGGTGGGGGTGGTAGGGTCCTTATCACCTTTGAG
GCGAGGTGGGTGTGCTGCTGTGTGTTGGGTGTTTGATCGTGAGAGTAGCC
AGCGGTTCCGTTTTTGTTGATCGAAAGCAGGACACGGGCGGGTGTGTGCC
GACACGCGTCGGGTCTGGTTTGTGTAAAAGTTGCACCCAGGGAACGCCTT
GTGCAGGGGCTGGAGGGTAATCGGGTGGGGGTTTAGCCTTGATCGATGTC
TTCATGTCGAGTGGTGCCAGTGGTGTGGAGTGGGCGTGTTTCCTTGTGGG
GGAGGGTGGTTGGGTGGCATTTTCGAGTGGAAGTTAAACATCAACAAATT
CATGCATTGTTGGACGCGCATGGAAGGAAGACGTATATTATCTAAATACA
TGAAAGTCGTATATTTACCTTGTTACATGAAAGTGTCGCAGTTTCACGTC
TCTTAAGCCAAGGACGGAAGGCTGCTCGCGTTTTCAGCGCT back to topprotein sequence of EsuBft981_4a-0001 >EsuBft981_4 ID=EsuBft981_4|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MQGASASGAITCTVCGERKPASEYSRNQLARSAREVCQVCLMSEGTVAAP
PSRVAPAAGEGVVRCVACCQVKTTSSFGINQLRRRAGIERCMLCVEKDLG
SVVLCHACNTHKPFTDFSKKQLACKPGSERCKVCIENASR back to topmRNA from alignment at Scaffold_347:362232..365885+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft981_4a-0001 ID=EsuBft981_4a-0001|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3654bp|location=Sequence derived from alignment at Scaffold_347:362232..365885+ (Ectocarpus subulatus male Bft15b)
GCAACACCATCCGCTAGATTCCTGCGCCCGCGGCCATCGTCTCAAGCCCC
CGCATCGTCAACGCTTCCGTGAGCCTCCCCCTGGAGATAGGGCTTGTTCA
CCGCACTAGAGCTGCAGCACCCGTGGAAGTAGCATCAGCAGCGCTAGCAC
GCGAGGGGCAAACATGCAGGTGAGAAAGTAGGCTTCCCTTTTTTCAGAGA
AAATCATCCTACTCGCCTATGTCGGTCAGACCGTCGGACGAGCCTAGAGG
TTACTTTGATACCGATATTTTTTTCAATACGACACAGGGTGATTTTTTCC
CAATGTAGGCGACCAGACCAGACCGGCCGAGCTTTGACTCGCCTGCCCTA
TACTACAATCATGGCTGGTGCCCGGCACATAACCATACCTTTTTGTAATT
TGATGTTTTAAGTGTGCGCCGAGGGCTAACTGAAGAACGTCGCCCTCATC
GAATCCAAGTGTTTGGCGGACGCAAATGAACTTATTGCTCGGCTTGTTCT
CCCCCTCTCCCAGGTATGGCATTAAACGCACTTTTCTGGTGAAACAATTC
CCTTCCCATCCTCACGCCCCCAGCCGTCGCGGAGAGCACGGTGCTGAAGT
CGGCATCCCCAAATCCCGACGAAACAAAACGTAACATTTTTACGTACACG
TACGACGCCCGCTCTTCCTTAGTCTAGAACCATTGTAGGCATATTTAACC
TCCTTATCGGTACAATACCCCTTGTCAGTATTTCCCCCCGCTGCTCCGCA
GCCGTGTGTTTACAAGATCGTACATCAATACATCCAACCAATCTCCTCGG
TTATTTTGTTCGCCCACACGCACGCACGACAGGGCGCATCGGCGAGTGGC
GCCATCACGTGTACCGTCTGCGGGGAGCGAAAGCCTGCCTCGGAGTACTC
TCGCAACCAGCTGGCCAGGTCCGCAAGGGAGGTGTGCCAGGTGTGCCTCA
TGAGTGAGGGAACGGTCGCGGCGCCCCCTTCTCGGGTGGCGCCCGCCGCG
GGCGAGGGCGTAGTCCGCTGCGTTGCTTGCTGCCAAGTGAAAACTACCTC
GTCGTTCGGCATCAATCAACTCCGCCGCCGCGCCGGCATCGAGCGCTGCA
TGCTCTGCGTGGAGAAGGACCTGGGGTCGGTGGTGCTCTGCCACGCTTGC
AACACGCACAAGCCCTTCACGGACTTCAGCAAGAAGCAGCTGGCGTGCAA
GCCCGGCTCGGAGAGGTGCAAGGTTTGCATCGAGAATGCGTCTCGGTGAT
GGGACTGCGGCGGTCGGCGGCGGGAGTGCCGAAAGGCCCGAGAGAGAAGA
GAGGGGGGGGCTCCAGTGAATCGAAGGGTACGCCGGTGAGCGAGAACGTT
GGCGGAAAAAGGCGTTCGTAGCCGTGAGCGACTCTACCCCTCGACTGCAC
TGACAGAGGAGGCTGTGAAGCCGAACTACTCTATCTAGACCTTTTGATCC
CTTGGAGGGGGGGAAGACTTTGGATCGAATGGAGTGTGAGAGGAAGTACG
GCAACATGGAATGCATGGTTGCGCCGAACCCTTCGTACTGCCGCCGTTCA
TACGTTCTTGTGCCCTTCTGTGCGTCGTTTGGCCCCCATCTTCGTCGTGG
AAAATGGGAAAGAGAACGAGAGAGGGAGGGAGGGAGGGATGCCACACGAT
TGCGAAGACAGACAAGGAGAATAGATGAGAGAAAGACGGGTGGAGGAGAT
ACAGAGACAAAGAAGGAGTGAGGGGGGGAGAAAGAGGCGGGTAGGGGCAG
AGACAGAGAATAAGGCATAGCGAGAGAGAGAGAGGCAAACAAAAATGAAA
CGGACAGACCGGGGTTGGATGGTGGAGCTTCACCCGAAGTTTCCATTGCC
AAATTTCAGATACAACAATTACTGACGAGCTTTTGATTTACATAATTTGG
TACATATTATTCTGTTGGAGCCTCGTCGCAGGATGGTTGGGACGGGGGGC
AGCATCAAAAGTACTGATTTTTACCATTCGTTCGGTAGGCGGGAGGCTGG
GACGTGTCTAGGGTGTCCAGCGAAAATACCCAAATGCTTCTCATTTTGTT
TTCGTATCAAAGTTCTAGATGCGTTGTTCCGAAAGACATGTGCGTGGAGT
AGTACGACGTTGGATGTTGGACATATTGTGTGTTTCGGGTTCTGAGCAAA
TGTAGACTACTCCAAGTAGAGAGAAGCTTTTGTTTTTCGTGTGTCGCGCC
TATCGACGAAAGGATTGGGCCAGTCCGCGTCAAGATTTCAACAGCGAATA
TTTGCGCGGCTGGATGGAGGGAGTGCGATTGGCTCTGTGGTTGTGCTGAT
GTATAGGGTGAGTGATAAACATGCCAGCGTGTACGGCGTGTGTCCCACTT
GTTGTTCCACGAATTGCGTTTTCATATCGGCGGGGTGTTGGTCGTGGTTG
TGGTTAAAGTCAGCTCAGCAAATATTTTTACGCCGTCGGCTGTCGGCACC
CATGTGGCATTACGTGTTTAGCCGAGTTTGTGGCGCTTGAGGCACATGGG
GGGGGGGGTGGCGGACAGCAGTGGAGGATTATCGATTGAGGGGGGGGGAG
GCGTGTCAAGCGTGGCGCATCTATCCTAGAGAAGATAGAGGGGCTCCCAT
TGGTCAGCATTCATGCATGACCCAACGGAGGAACATTGCTCTGGGCTGGT
CGGTGCATCAGTTCGAACCGTGGTCGCTGTACACGAATTGCGGTGGTAAT
GATTTGTCTCCAGTTTTAGGTGATTGCGTTTTTCTTCATAGCTTTACGTC
AGAAACAATTTTCAGCGAGGGGGGGCGGGCGATAGGAGCTGCGCCAGAGG
CGAGTCGATTGCGGTGACGCCGTCCACGGAACTTTCCATGGAACATTCCT
GTGGAACATGCCTAACCCGTAGGAGCGGCAGTGGTGAGGTGGGGGCGGGG
ACTGTGCATGGTGAAAGCAAGGGGATGGCAGGCAATTGCCATTTTCGTCG
TAGAGCCACGTGCGAAAATTTCTGTGCATGGTCGACGTTTCCCGTGTGGA
AAAGGGGCGGGTCCGTCAATATTTTACGGTTGACTTCCCCATTTTTTGTA
TAGAATGGAAGATGTGTGTGGGCCTCAGGTGTCCCCCGCTTGGCGTTTGG
GTTCGATTGTTTGGTCGATATTTACACAGGACGCCTTGTGCAAGGGAGGA
GGGGCTTTTCGGTGATGAGGGGGTTGGCATGGTGGGGGTGGTAGGGTCCT
TATCACCTTTGAGGCGAGGTGGGTGTGCTGCTGTGTGTTGGGTGTTTGAT
CGTGAGAGTAGCCAGCGGTTCCGTTTTTGTTGATCGAAAGCAGGACACGG
GCGGGTGTGTGCCGACACGCGTCGGGTCTGGTTTGTGTAAAAGTTGCACC
CAGGGAACGCCTTGTGCAGGGGCTGGAGGGTAATCGGGTGGGGGTTTAGC
CTTGATCGATGTCTTCATGTCGAGTGGTGCCAGTGGTGTGGAGTGGGCGT
GTTTCCTTGTGGGGGAGGGTGGTTGGGTGGCATTTTCGAGTGGAAGTTAA
ACATCAACAAATTCATGCATTGTTGGACGCGCATGGAAGGAAGACGTATA
TTATCTAAATACATGAAAGTCGTATATTTACCTTGTTACATGAAAGTGTC
GCAGTTTCACGTCTCTTAAGCCAAGGACGGAAGGCTGCTCGCGTTTTCAG
CGCT back to topCoding sequence (CDS) from alignment at Scaffold_347:362232..365885+ >EsuBft981_4a-0001 ID=EsuBft981_4a-0001|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_347:362232..365885+ (Ectocarpus subulatus male Bft15b)
ATGCAGGGCGCATCGGCGAGTGGCGCCATCACGTGTACCGTCTGCGGGGA
GCGAAAGCCTGCCTCGGAGTACTCTCGCAACCAGCTGGCCAGGTCCGCAA
GGGAGGTGTGCCAGGTGTGCCTCATGAGTGAGGGAACGGTCGCGGCGCCC
CCTTCTCGGGTGGCGCCCGCCGCGGGCGAGGGCGTAGTCCGCTGCGTTGC
TTGCTGCCAAGTGAAAACTACCTCGTCGTTCGGCATCAATCAACTCCGCC
GCCGCGCCGGCATCGAGCGCTGCATGCTCTGCGTGGAGAAGGACCTGGGG
TCGGTGGTGCTCTGCCACGCTTGCAACACGCACAAGCCCTTCACGGACTT
CAGCAAGAAGCAGCTGGCGTGCAAGCCCGGCTCGGAGAGGTGCAAGGTTT
GCATCGAGAATGCGTCTCGGTGA back to top
|