EsuBft981_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft981_3a-0001
Unique NameEsuBft981_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:371209..376194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft981_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length360
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_000890.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft981_3aEsuBft981_3aEctocarpus subulatus male Bft15bgeneScaffold_347 371209..376194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_3a-0001EsuBft981_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 374945..375250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_3a-0001-exonagat-exon-78755Ectocarpus subulatus male Bft15bexonScaffold_347 371209..373896 -
EsuBft981_3a-0001-exonEsuBft981_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 374526..375296 -
EsuBft981_3a-0001-exonagat-exon-78756Ectocarpus subulatus male Bft15bexonScaffold_347 376053..376194 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_3a-0001-exonagat-three_prime_utr-23759Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 371209..373896 -
EsuBft981_3a-0001-exonagat-three_prime_utr-23760Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 374526..374944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_3a-0001-cdsEsuBft981_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 374945..375250 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_3a-0001-exonagat-five_prime_utr-15470Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 375251..375296 -
EsuBft981_3a-0001-exonagat-five_prime_utr-15471Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 376053..376194 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft981_3a-0001 ID=EsuBft981_3a-0001|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3601bp|location=Sequence derived from alignment at Scaffold_347:371209..376194- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGGCCCGCCACTCCCAATCAATCCCACAACCACTACACCATCCTCGCTC
TCCTCCTACAGAGCCTGTTCCCTCCCGACACCTCCTCCAGCAACGTCGAC
GTACAATACCAGTGAAGGCATCACCTCCTCTCTCATTTTAAGTTTTTTTG
TCCCAGAGTAGTCTATCGGCAGTTCAACAAGCAGAGCCATGGACAACTGG
AGACAGGACAAGTGCACCGAAATCAACAAGGCACTCGAGCGCATCGAGAA
GAGAGCAGACAGGGTAAGCCGAATGATGAGCTCCTCTTCTTCTGCTCTCA
ACCAAGAAGACCAGCCGCAGCATCAGCAGCAGGAGCAGCAGCAGCAGCAG
CAAGTGGCTACCCTAACCAACGAGCTGGCTAGACTGCAAGACATGAACAA
CCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACTCGAACCTCGGCT
ACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGAAAGTAAGTTGTT
GCTGTTGTTTCTCACATTAGCTCTATTGTCCACAAGAAATGGGGAGCCCG
TGGTCTCAACACCCGGCACATACGACGCCGCGGGGACACAAAACACTACC
CATACACAACACCGTCAAAACTACTTGAAAGCTAGAACAACCTATCATTC
CTCTATTATTCCCACATACTTTTCTTCGCTTTTTGCCTTTGGTCTTTTTC
TTTCTTTTCTGTGCAAGATGGCCTTGTCTCTGCTTGCGTTGTGATGTATC
AAGATTGAACCGGGGGTGTATGTACCTCATTCTCTCTGGCCCGTGATGGT
GACCCTAGTCTCAGTTGTTACCTCGTATAAGCGCGCAGAAGGAATGGAGG
ACTCCAGAATATCTGTCGTTGATTTCTCGGGGCAAATTTATTTGAGTGTA
GTACCTTTTTAGGGTAGCCTTCCGCTCACGCTATGGATTCATTGCTACTC
TATCTTAGACGTATTTCTATAGATAGAGATGGATTTGTTGTGTGATATTA
AGAAGAAAAAAAAAATAGGGTATGAACCACTCGGAAAATGAAGACAAAAA
GATAGAAAGAAAATAAAAGGTACCGCACCGTCCGTTCGAGAAAAGAGCCC
TCGGAAACCGATCAAAATCAAAACAAAAACAAAAAAATAGGAGGACGCTT
CCCACACCCTCTTAAGTGTAGCCGGGCGTCTGTTTCGTTTTCATCATGAT
GATGGTGGCCTGCGATGATAGGCTGTACAGGTGGACGTATTTGTGCGTGC
TGGTCATCGTTGGATGCATAATAAACTGTTGTGTGCCTTTTGGTAAGCAG
CTGTTGTCTGATCTTCCCTCTCTTGTCCGGCCAATCAACCGGCGGCACGT
GAAGGCGTTCCATGATGGAGTACTGCAGTGTTAATTTTGGGGTGTTGCCG
GTTCTTTCCGCATCATCGATCGGTTTCCGAATTTTCCAAGAGTTTTCCAA
GAAGCAGGTCGAGCGCGGCGCAAATTCGGCGGGATAACTCTCGCCCGCAC
ATGATGCGGGATCCAATCTTTCCGACTCTAAATACCGACATTCCTTCCGA
TGCTCCTGTTGTGGCATACATACATGCGCACATGTCCTTATGATTAACCG
AACCCCACGCCCAATCAAACACCTTTCTTTCAGGATCTGCGTCAAAGCCG
AAGGCTTCGTGCACCATCAGCAGCGGCGCGACCCCCACCCCCGCCACCGC
CACCGCCACCACCATCCTTCAGGGCACAAGCACAGCAGCAGCAGCAGCAG
CAAGCAGCCAACCCTCGTGGAAGTGAGGTCAAAGTGACGACGCATGCGCC
GTCACAACGAACGACCGTCGGCCGGACGGACGTGTTGCAACCGCTGTCAA
CCCTGGCCGTCATTTTCCGTCATGCCGGTGAAGGTTACCGTTTGTTGACA
CTCAACAGCAACGCGCTGTTTCGTCTCTTTTTTCCCCCGTCAATGGTGCG
GTGGGCAGCGAACGGTTTGATGAAATGACGCCAGAACCGCCCGCCGTTGG
TTGTTTGCAGGGAAGAGGAGCGACTTTTTTTTCATTGTTTTTGCTTAAGA
GAGTTGGCCGTGTATTTTTTTTTTGTGTGAAACATCCCGCTCACGCTGGA
CGCCAGTTTTTTGCACCTTTCGGGTGGGTGTGTTTTGGTGGAGGCATCAT
CAGCCGGGTCACACGGGGGGGAGGCGCATGCTATTTCGAGAGCTGCTACT
TAGAACATTTGTAGTGTACCATATTTCTTTCGGGCGCAATACTGCTGTGG
CAGTGACCTGCAAAATAGAGAGCACACGGGGGGGGGGAAATCACACTAGG
CATGGGAGAAGCCACTGCTTGATTACGAAGAGGGCAACTCGTGTTGTCAA
CCACGGCTTCAAATGGTGTTGCAACACTCTGCGCAGCATCTACAGTATGT
ACATGATATCGTTCGTTGTAGGCCAAGTACTACGTACGTACCGTGTCCTT
TCCTTGTTTAGGAAGACGGTAAACAACACTGCAGGGAATGTCGAGATCGA
GGAAAAATAGCAGTGGAGTAACTTTATAGAGGTGATGAACAGTTCGTCGT
GGATCTTGATGATAGATTATGGTTCTTCGTGTGTAGACTTTTTTGTTATA
TAGACTGTCTTTTTCCGGCGTGCTATGCATCACAACCTTTGATCGGAAAT
ATAGGGACCATTGTGATATTCGCGCCTGTATCCGAATGGCCATGATATTT
TCGAACGGAGTTACTTCAGCGACTAGACTAGACTATGTTCTGCACGAATT
GGCGTTCACCTGGAGCACGTCAGCATTGCCTGCGAGTTACCCCCGACCAG
GTTATCCTCCGGCGTTTGTACATGCTTGCAGCCCTAGAGGATGATTGGAG
AGCGTCATCGCTCTCAATCGTAACAATGGCCCACGGACATCACGTACGTG
TGCTTTGACCTATTGTTGGTGCTATCCCGGCCTTGCGCCGGTGTTGGTTT
GATATTAAAGCTGCTGTGTGACACCGTGTGATCGCTTCGAAACGGAGCAT
TCTAGGGATTTTCTAAAGCAGGAACTGGAGGCCTTTTACGACATGTATAT
TTCGATGTTGTTAGAGGGGGGGCAAACGAACAGCCTGGGCAGAATCGACT
GCAGCACACGAGTAAGATTTTTTTCGCCGATGTTCGGGCGGACACCAGTC
GTGCGCGATGAAAAAAGCACGACCGTGTTGGTGCTCAGTAGATCTAGAGT
TTTGCATTTTTGAAACGGGAAGCGACGGCGGTGGCATTGATTTGCAGCCA
CAGGGTGCGTGCGTGCTTGATACTGCTGTAGAGTGGTTGATCGCACGCCG
TGAAGCGTTCATGCAAGGCGAAATTTGTTCACGCACAATAAGACTAGTTG
CGTGGCGTTGATCATGCGTATTGCCATGCCTACGCGCCGCCGAACGGCGT
TGGGTGTTAGCTCGGAGTTCTTAGGGTGGCGACGGAACGTACCACCGTTC
GTCCGCGTACTACAGTATCACGCGTTACCGTACGGAGAGCAAGTTGAAGT
ACGTAGACAGTAAAGCGGTTCAATCATGCGTTTGACGCCCCATATTGTGA
GCAATTTAAGGACGCGCTTCTTGCAAGCAACTATGCCGACGAGGGTCTTA
T
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protein sequence of EsuBft981_3a-0001

>EsuBft981_3 ID=EsuBft981_3|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MDNWRQDKCTEINKALERIEKRADRVSRMMSSSSSALNQEDQPQHQQQEQ
QQQQQVATLTNELARLQDMNNRLFDFRDRLCFYSNLGYVEALNEWQYEIR
K
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mRNA from alignment at Scaffold_347:371209..376194-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft981_3a-0001 ID=EsuBft981_3a-0001|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4986bp|location=Sequence derived from alignment at Scaffold_347:371209..376194- (Ectocarpus subulatus male Bft15b)
CAGGCCCGCCACTCCCAATCAATCCCACAACCACTACACCATCCTCGCTC TCCTCCTACAGAGCCTGTTCCCTCCCGACACCTCCTCCAGCAACGTCGAC GTACAATACCAGTGAAGGCATCACCTCCTCTCTCATTTTAAGGTGTGGGT CTTGACCGCGCGATGTTGGCCTCTCCGTGTGTCACGGTCATGGACATGAT GATGCTGTGCTGTACATGTAGTCTACTGCTGTAGTTGCATTTCTCAACGA GAAGGAGGACCGTCGTTGGTGCGGCAGTGACGACGACCAGCGCGCGACAC GGGTACGTCAGCAGCTATACCACCTGCAGCAGTACAACAACAGCAGCAGT GTTGCGCAAGAGGTGCCGTGCCCTTCTCGTCATGTGCGGTTTGGCGTGAT TTGGTGTTGTTCGGCACTCTACAGCAGTAAGCCCCAAGCCGTCCCTACAC TCTTGTAAATGTCAACGCTTCGCGTTCGTACTTGTTTGCTCAGGTTCTTC ATTCGACTGGACGAAAAATAGCGTCCTCCCAACCATTATGAGTGCATCAT TACCGAATACCCAATACCTCATGTACTGTTCTCAGCTGTATACCGCTGTT ATATCGAATCGCAGCTGCTGGTACGTGTGTAGACTAACCCTTCGTGTTAC CCTACCGTCATACACACACTTGGTCGTGTTTCTGACCCTTCGTGTAGATG ATACGCATCAGGACGGCAGATTGGGTCCGCACGTACGAACGTAAGCGAGC CTATGCGTTGTTTATATCTTCTTGTTTAACAACGAACGTCGCAAGCTGTC TCTTACTATCATGCTGCCTCCTTTCCGCCTTGCCTCTCCGGCGCATTGCC CGTGTCCCTTTCGCTGTGCGTGCCTGTGTCGGAAAATTCTTGCTCCAGTT TTTTTGTCCCAGAGTAGTCTATCGGCAGTTCAACAAGCAGAGCCATGGAC AACTGGAGACAGGACAAGTGCACCGAAATCAACAAGGCACTCGAGCGCAT CGAGAAGAGAGCAGACAGGGTAAGCCGAATGATGAGCTCCTCTTCTTCTG CTCTCAACCAAGAAGACCAGCCGCAGCATCAGCAGCAGGAGCAGCAGCAG CAGCAGCAAGTGGCTACCCTAACCAACGAGCTGGCTAGACTGCAAGACAT GAACAACCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACTCGAACC TCGGCTACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGAAAGTAA GTTGTTGCTGTTGTTTCTCACATTAGCTCTATTGTCCACAAGAAATGGGG AGCCCGTGGTCTCAACACCCGGCACATACGACGCCGCGGGGACACAAAAC ACTACCCATACACAACACCGTCAAAACTACTTGAAAGCTAGAACAACCTA TCATTCCTCTATTATTCCCACATACTTTTCTTCGCTTTTTGCCTTTGGTC TTTTTCTTTCTTTTCTGTGCAAGATGGCCTTGTCTCTGCTTGCGTTGTGA TGTATCAAGATTGAACCGGGGGTGTATGTACCTCATTCTCTCTGGCCCGT GATGGTGACCCTAGTCTCAGTTGTTACCTCGTATAAGCGCGCAGAAGGAA TGGAGGACTCCAGAATATCTGTCGTTGATTTCTCGGGGCAAATTTATTTG AGTGTAGTACCTTTTTAGGGTAAGTCAACCTGCGACGACGGGAATCGACC ACGTCGAGTGTTGGATCAGTACGGACATACGAAGGTACCGGGTAGAGAGA GATCGGAACGGTTTTTAATGTGAACACAACAACAACAACAACATACAAAT GATGTAGTGCATGAAATGATACACTCTGTCGTTACTTATGGTCCGCGCTG CCTAAAAATATATGGGAAAGGTAGCTATACCTGCTGCCGACACACGGGCG AGAGAGGCGACCATACCCAATGCATTTAACACACACCCACATGTCAGTGA TGAAACCCCAACCACACGCCTCTATCTATCGGCGGCCACGTCAGGAGGCA ATGATGAGATAATGTTCTCCCGTGCCCTTCTCACATTGAACGACATGCCA TTACACAACAAGGTAAATATGTTCTCCCGCGCCGCACATGCCCCCATACA TCACAAACAGAAAATAAGTTGGTGACGAAACTAATACACAACCCAAGACG CGCTTGCTCCGCAACCACATAAGGGTGCTATTATAGAACATCCGACAAAC CGAGTTCCCCTAAATCTTCCGTCTACAACTTCTCTCTTATACACATCTAG ATGTGTAAAAGAGACAGGACTAGAGAAGNGGAAACCGTAGACATACAGGT AGCCTTCCGCTCACGCTATGGATTCATTGCTACTCTATCTTAGACGTATT TCTATAGATAGAGATGGATTTGTTGTGTGATATTAAGAAGAAAAAAAAAA TAGGGTATGAACCACTCGGAAAATGAAGACAAAAAGATAGAAAGAAAATA AAAGGTACCGCACCGTCCGTTCGAGAAAAGAGCCCTCGGAAACCGATCAA AATCAAAACAAAAACAAAAAAATAGGAGGACGCTTCCCACACCCTCTTAA GTGTAGCCGGGCGTCTGTTTCGTTTTCATCATGATGATGGTGGCCTGCGA TGATAGGCTGTACAGGTGGACGTATTTGTGCGTGCTGGTCATCGTTGGAT GCATAATAAACTGTTGTGTGCCTTTTGGTAAGCAGCTGTTGTCTGATCTT CCCTCTCTTGTCCGGCCAATCAACCGGCGGCACGTGAAGGCGTTCCATGA TGGAGTACTGCAGTGTTAATTTTGGGGTGTTGCCGGTTCTTTCCGCATCA TCGATCGGTTTCCGAATTTTCCAAGAGTTTTCCAAGAAGCAGGTCGAGCG CGGCGCAAATTCGGCGGGATAACTCTCGCCCGCACATGATGCGGGATCCA ATCTTTCCGACTCTAAATACCGACATTCCTTCCGATGCTCCTGTTGTGGC ATACATACATGCGCACATGTCCTTATGATTAACCGAACCCCACGCCCAAT CAAACACCTTTCTTTCAGGATCTGCGTCAAAGCCGAAGGCTTCGTGCACC ATCAGCAGCGGCGCGACCCCCACCCCCGCCACCGCCACCGCCACCACCAT CCTTCAGGGCACAAGCACAGCAGCAGCAGCAGCAGCAAGCAGCCAACCCT CGTGGAAGTGAGGTCAAAGTGACGACGCATGCGCCGTCACAACGAACGAC CGTCGGCCGGACGGACGTGTTGCAACCGCTGTCAACCCTGGCCGTCATTT TCCGTCATGCCGGTGAAGGTTACCGTTTGTTGACACTCAACAGCAACGCG CTGTTTCGTCTCTTTTTTCCCCCGTCAATGGTGCGGTGGGCAGCGAACGG TTTGATGAAATGACGCCAGAACCGCCCGCCGTTGGTTGTTTGCAGGGAAG AGGAGCGACTTTTTTTTCATTGTTTTTGCTTAAGAGAGTTGGCCGTGTAT TTTTTTTTTGTGTGAAACATCCCGCTCACGCTGGACGCCAGTTTTTTGCA CCTTTCGGGTGGGTGTGTTTTGGTGGAGGCATCATCAGCCGGGTCACACG GGGGGGAGGCGCATGCTATTTCGAGAGCTGCTACTTAGAACATTTGTAGT GTACCATATTTCTTTCGGGCGCAATACTGCTGTGGCAGTGACCTGCAAAA TAGAGAGCACACGGGGGGGGGGAAATCACACTAGGCATGGGAGAAGCCAC TGCTTGATTACGAAGAGGGCAACTCGTGTTGTCAACCACGGCTTCAAATG GTGTTGCAACACTCTGCGCAGCATCTACAGTATGTACATGATATCGTTCG TTGTAGGCCAAGTACTACGTACGTACCGTGTCCTTTCCTTGTTTAGGAAG ACGGTAAACAACACTGCAGGGAATGTCGAGATCGAGGAAAAATAGCAGTG GAGTAACTTTATAGAGGTGATGAACAGTTCGTCGTGGATCTTGATGATAG ATTATGGTTCTTCGTGTGTAGACTTTTTTGTTATATAGACTGTCTTTTTC CGGCGTGCTATGCATCACAACCTTTGATCGGAAATATAGGGACCATTGTG ATATTCGCGCCTGTATCCGAATGGCCATGATATTTTCGAACGGAGTTACT TCAGCGACTAGACTAGACTATGTTCTGCACGAATTGGCGTTCACCTGGAG CACGTCAGCATTGCCTGCGAGTTACCCCCGACCAGGTTATCCTCCGGCGT TTGTACATGCTTGCAGCCCTAGAGGATGATTGGAGAGCGTCATCGCTCTC AATCGTAACAATGGCCCACGGACATCACGTACGTGTGCTTTGACCTATTG TTGGTGCTATCCCGGCCTTGCGCCGGTGTTGGTTTGATATTAAAGCTGCT GTGTGACACCGTGTGATCGCTTCGAAACGGAGCATTCTAGGGATTTTCTA AAGCAGGAACTGGAGGCCTTTTACGACATGTATATTTCGATGTTGTTAGA GGGGGGGCAAACGAACAGCCTGGGCAGAATCGACTGCAGCACACGAGTAA GATTTTTTTCGCCGATGTTCGGGCGGACACCAGTCGTGCGCGATGAAAAA AGCACGACCGTGTTGGTGCTCAGTAGATCTAGAGTTTTGCATTTTTGAAA CGGGAAGCGACGGCGGTGGCATTGATTTGCAGCCACAGGGTGCGTGCGTG CTTGATACTGCTGTAGAGTGGTTGATCGCACGCCGTGAAGCGTTCATGCA AGGCGAAATTTGTTCACGCACAATAAGACTAGTTGCGTGGCGTTGATCAT GCGTATTGCCATGCCTACGCGCCGCCGAACGGCGTTGGGTGTTAGCTCGG AGTTCTTAGGGTGGCGACGGAACGTACCACCGTTCGTCCGCGTACTACAG TATCACGCGTTACCGTACGGAGAGCAAGTTGAAGTACGTAGACAGTAAAG CGGTTCAATCATGCGTTTGACGCCCCATATTGTGAGCAATTTAAGGACGC GCTTCTTGCAAGCAACTATGCCGACGAGGGTCTTAT
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Coding sequence (CDS) from alignment at Scaffold_347:371209..376194-

>EsuBft981_3a-0001 ID=EsuBft981_3a-0001|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_347:371209..376194- (Ectocarpus subulatus male Bft15b)
ATGGACAACTGGAGACAGGACAAGTGCACCGAAATCAACAAGGCACTCGA
GCGCATCGAGAAGAGAGCAGACAGGGTAAGCCGAATGATGAGCTCCTCTT
CTTCTGCTCTCAACCAAGAAGACCAGCCGCAGCATCAGCAGCAGGAGCAG
CAGCAGCAGCAGCAAGTGGCTACCCTAACCAACGAGCTGGCTAGACTGCA
AGACATGAACAACCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACT
CGAACCTCGGCTACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGA
AAGTAA
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