Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft981_3 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 360 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-18_000890.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft981_3a-0001 ID=EsuBft981_3a-0001|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3601bp|location=Sequence derived from alignment at Scaffold_347:371209..376194- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CAGGCCCGCCACTCCCAATCAATCCCACAACCACTACACCATCCTCGCTC
TCCTCCTACAGAGCCTGTTCCCTCCCGACACCTCCTCCAGCAACGTCGAC
GTACAATACCAGTGAAGGCATCACCTCCTCTCTCATTTTAAGTTTTTTTG
TCCCAGAGTAGTCTATCGGCAGTTCAACAAGCAGAGCCATGGACAACTGG
AGACAGGACAAGTGCACCGAAATCAACAAGGCACTCGAGCGCATCGAGAA
GAGAGCAGACAGGGTAAGCCGAATGATGAGCTCCTCTTCTTCTGCTCTCA
ACCAAGAAGACCAGCCGCAGCATCAGCAGCAGGAGCAGCAGCAGCAGCAG
CAAGTGGCTACCCTAACCAACGAGCTGGCTAGACTGCAAGACATGAACAA
CCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACTCGAACCTCGGCT
ACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGAAAGTAAGTTGTT
GCTGTTGTTTCTCACATTAGCTCTATTGTCCACAAGAAATGGGGAGCCCG
TGGTCTCAACACCCGGCACATACGACGCCGCGGGGACACAAAACACTACC
CATACACAACACCGTCAAAACTACTTGAAAGCTAGAACAACCTATCATTC
CTCTATTATTCCCACATACTTTTCTTCGCTTTTTGCCTTTGGTCTTTTTC
TTTCTTTTCTGTGCAAGATGGCCTTGTCTCTGCTTGCGTTGTGATGTATC
AAGATTGAACCGGGGGTGTATGTACCTCATTCTCTCTGGCCCGTGATGGT
GACCCTAGTCTCAGTTGTTACCTCGTATAAGCGCGCAGAAGGAATGGAGG
ACTCCAGAATATCTGTCGTTGATTTCTCGGGGCAAATTTATTTGAGTGTA
GTACCTTTTTAGGGTAGCCTTCCGCTCACGCTATGGATTCATTGCTACTC
TATCTTAGACGTATTTCTATAGATAGAGATGGATTTGTTGTGTGATATTA
AGAAGAAAAAAAAAATAGGGTATGAACCACTCGGAAAATGAAGACAAAAA
GATAGAAAGAAAATAAAAGGTACCGCACCGTCCGTTCGAGAAAAGAGCCC
TCGGAAACCGATCAAAATCAAAACAAAAACAAAAAAATAGGAGGACGCTT
CCCACACCCTCTTAAGTGTAGCCGGGCGTCTGTTTCGTTTTCATCATGAT
GATGGTGGCCTGCGATGATAGGCTGTACAGGTGGACGTATTTGTGCGTGC
TGGTCATCGTTGGATGCATAATAAACTGTTGTGTGCCTTTTGGTAAGCAG
CTGTTGTCTGATCTTCCCTCTCTTGTCCGGCCAATCAACCGGCGGCACGT
GAAGGCGTTCCATGATGGAGTACTGCAGTGTTAATTTTGGGGTGTTGCCG
GTTCTTTCCGCATCATCGATCGGTTTCCGAATTTTCCAAGAGTTTTCCAA
GAAGCAGGTCGAGCGCGGCGCAAATTCGGCGGGATAACTCTCGCCCGCAC
ATGATGCGGGATCCAATCTTTCCGACTCTAAATACCGACATTCCTTCCGA
TGCTCCTGTTGTGGCATACATACATGCGCACATGTCCTTATGATTAACCG
AACCCCACGCCCAATCAAACACCTTTCTTTCAGGATCTGCGTCAAAGCCG
AAGGCTTCGTGCACCATCAGCAGCGGCGCGACCCCCACCCCCGCCACCGC
CACCGCCACCACCATCCTTCAGGGCACAAGCACAGCAGCAGCAGCAGCAG
CAAGCAGCCAACCCTCGTGGAAGTGAGGTCAAAGTGACGACGCATGCGCC
GTCACAACGAACGACCGTCGGCCGGACGGACGTGTTGCAACCGCTGTCAA
CCCTGGCCGTCATTTTCCGTCATGCCGGTGAAGGTTACCGTTTGTTGACA
CTCAACAGCAACGCGCTGTTTCGTCTCTTTTTTCCCCCGTCAATGGTGCG
GTGGGCAGCGAACGGTTTGATGAAATGACGCCAGAACCGCCCGCCGTTGG
TTGTTTGCAGGGAAGAGGAGCGACTTTTTTTTCATTGTTTTTGCTTAAGA
GAGTTGGCCGTGTATTTTTTTTTTGTGTGAAACATCCCGCTCACGCTGGA
CGCCAGTTTTTTGCACCTTTCGGGTGGGTGTGTTTTGGTGGAGGCATCAT
CAGCCGGGTCACACGGGGGGGAGGCGCATGCTATTTCGAGAGCTGCTACT
TAGAACATTTGTAGTGTACCATATTTCTTTCGGGCGCAATACTGCTGTGG
CAGTGACCTGCAAAATAGAGAGCACACGGGGGGGGGGAAATCACACTAGG
CATGGGAGAAGCCACTGCTTGATTACGAAGAGGGCAACTCGTGTTGTCAA
CCACGGCTTCAAATGGTGTTGCAACACTCTGCGCAGCATCTACAGTATGT
ACATGATATCGTTCGTTGTAGGCCAAGTACTACGTACGTACCGTGTCCTT
TCCTTGTTTAGGAAGACGGTAAACAACACTGCAGGGAATGTCGAGATCGA
GGAAAAATAGCAGTGGAGTAACTTTATAGAGGTGATGAACAGTTCGTCGT
GGATCTTGATGATAGATTATGGTTCTTCGTGTGTAGACTTTTTTGTTATA
TAGACTGTCTTTTTCCGGCGTGCTATGCATCACAACCTTTGATCGGAAAT
ATAGGGACCATTGTGATATTCGCGCCTGTATCCGAATGGCCATGATATTT
TCGAACGGAGTTACTTCAGCGACTAGACTAGACTATGTTCTGCACGAATT
GGCGTTCACCTGGAGCACGTCAGCATTGCCTGCGAGTTACCCCCGACCAG
GTTATCCTCCGGCGTTTGTACATGCTTGCAGCCCTAGAGGATGATTGGAG
AGCGTCATCGCTCTCAATCGTAACAATGGCCCACGGACATCACGTACGTG
TGCTTTGACCTATTGTTGGTGCTATCCCGGCCTTGCGCCGGTGTTGGTTT
GATATTAAAGCTGCTGTGTGACACCGTGTGATCGCTTCGAAACGGAGCAT
TCTAGGGATTTTCTAAAGCAGGAACTGGAGGCCTTTTACGACATGTATAT
TTCGATGTTGTTAGAGGGGGGGCAAACGAACAGCCTGGGCAGAATCGACT
GCAGCACACGAGTAAGATTTTTTTCGCCGATGTTCGGGCGGACACCAGTC
GTGCGCGATGAAAAAAGCACGACCGTGTTGGTGCTCAGTAGATCTAGAGT
TTTGCATTTTTGAAACGGGAAGCGACGGCGGTGGCATTGATTTGCAGCCA
CAGGGTGCGTGCGTGCTTGATACTGCTGTAGAGTGGTTGATCGCACGCCG
TGAAGCGTTCATGCAAGGCGAAATTTGTTCACGCACAATAAGACTAGTTG
CGTGGCGTTGATCATGCGTATTGCCATGCCTACGCGCCGCCGAACGGCGT
TGGGTGTTAGCTCGGAGTTCTTAGGGTGGCGACGGAACGTACCACCGTTC
GTCCGCGTACTACAGTATCACGCGTTACCGTACGGAGAGCAAGTTGAAGT
ACGTAGACAGTAAAGCGGTTCAATCATGCGTTTGACGCCCCATATTGTGA
GCAATTTAAGGACGCGCTTCTTGCAAGCAACTATGCCGACGAGGGTCTTA
T back to topprotein sequence of EsuBft981_3a-0001 >EsuBft981_3 ID=EsuBft981_3|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MDNWRQDKCTEINKALERIEKRADRVSRMMSSSSSALNQEDQPQHQQQEQ
QQQQQVATLTNELARLQDMNNRLFDFRDRLCFYSNLGYVEALNEWQYEIR
K back to topmRNA from alignment at Scaffold_347:371209..376194- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft981_3a-0001 ID=EsuBft981_3a-0001|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4986bp|location=Sequence derived from alignment at Scaffold_347:371209..376194- (Ectocarpus subulatus male Bft15b)
CAGGCCCGCCACTCCCAATCAATCCCACAACCACTACACCATCCTCGCTC
TCCTCCTACAGAGCCTGTTCCCTCCCGACACCTCCTCCAGCAACGTCGAC
GTACAATACCAGTGAAGGCATCACCTCCTCTCTCATTTTAAGGTGTGGGT
CTTGACCGCGCGATGTTGGCCTCTCCGTGTGTCACGGTCATGGACATGAT
GATGCTGTGCTGTACATGTAGTCTACTGCTGTAGTTGCATTTCTCAACGA
GAAGGAGGACCGTCGTTGGTGCGGCAGTGACGACGACCAGCGCGCGACAC
GGGTACGTCAGCAGCTATACCACCTGCAGCAGTACAACAACAGCAGCAGT
GTTGCGCAAGAGGTGCCGTGCCCTTCTCGTCATGTGCGGTTTGGCGTGAT
TTGGTGTTGTTCGGCACTCTACAGCAGTAAGCCCCAAGCCGTCCCTACAC
TCTTGTAAATGTCAACGCTTCGCGTTCGTACTTGTTTGCTCAGGTTCTTC
ATTCGACTGGACGAAAAATAGCGTCCTCCCAACCATTATGAGTGCATCAT
TACCGAATACCCAATACCTCATGTACTGTTCTCAGCTGTATACCGCTGTT
ATATCGAATCGCAGCTGCTGGTACGTGTGTAGACTAACCCTTCGTGTTAC
CCTACCGTCATACACACACTTGGTCGTGTTTCTGACCCTTCGTGTAGATG
ATACGCATCAGGACGGCAGATTGGGTCCGCACGTACGAACGTAAGCGAGC
CTATGCGTTGTTTATATCTTCTTGTTTAACAACGAACGTCGCAAGCTGTC
TCTTACTATCATGCTGCCTCCTTTCCGCCTTGCCTCTCCGGCGCATTGCC
CGTGTCCCTTTCGCTGTGCGTGCCTGTGTCGGAAAATTCTTGCTCCAGTT
TTTTTGTCCCAGAGTAGTCTATCGGCAGTTCAACAAGCAGAGCCATGGAC
AACTGGAGACAGGACAAGTGCACCGAAATCAACAAGGCACTCGAGCGCAT
CGAGAAGAGAGCAGACAGGGTAAGCCGAATGATGAGCTCCTCTTCTTCTG
CTCTCAACCAAGAAGACCAGCCGCAGCATCAGCAGCAGGAGCAGCAGCAG
CAGCAGCAAGTGGCTACCCTAACCAACGAGCTGGCTAGACTGCAAGACAT
GAACAACCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACTCGAACC
TCGGCTACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGAAAGTAA
GTTGTTGCTGTTGTTTCTCACATTAGCTCTATTGTCCACAAGAAATGGGG
AGCCCGTGGTCTCAACACCCGGCACATACGACGCCGCGGGGACACAAAAC
ACTACCCATACACAACACCGTCAAAACTACTTGAAAGCTAGAACAACCTA
TCATTCCTCTATTATTCCCACATACTTTTCTTCGCTTTTTGCCTTTGGTC
TTTTTCTTTCTTTTCTGTGCAAGATGGCCTTGTCTCTGCTTGCGTTGTGA
TGTATCAAGATTGAACCGGGGGTGTATGTACCTCATTCTCTCTGGCCCGT
GATGGTGACCCTAGTCTCAGTTGTTACCTCGTATAAGCGCGCAGAAGGAA
TGGAGGACTCCAGAATATCTGTCGTTGATTTCTCGGGGCAAATTTATTTG
AGTGTAGTACCTTTTTAGGGTAAGTCAACCTGCGACGACGGGAATCGACC
ACGTCGAGTGTTGGATCAGTACGGACATACGAAGGTACCGGGTAGAGAGA
GATCGGAACGGTTTTTAATGTGAACACAACAACAACAACAACATACAAAT
GATGTAGTGCATGAAATGATACACTCTGTCGTTACTTATGGTCCGCGCTG
CCTAAAAATATATGGGAAAGGTAGCTATACCTGCTGCCGACACACGGGCG
AGAGAGGCGACCATACCCAATGCATTTAACACACACCCACATGTCAGTGA
TGAAACCCCAACCACACGCCTCTATCTATCGGCGGCCACGTCAGGAGGCA
ATGATGAGATAATGTTCTCCCGTGCCCTTCTCACATTGAACGACATGCCA
TTACACAACAAGGTAAATATGTTCTCCCGCGCCGCACATGCCCCCATACA
TCACAAACAGAAAATAAGTTGGTGACGAAACTAATACACAACCCAAGACG
CGCTTGCTCCGCAACCACATAAGGGTGCTATTATAGAACATCCGACAAAC
CGAGTTCCCCTAAATCTTCCGTCTACAACTTCTCTCTTATACACATCTAG
ATGTGTAAAAGAGACAGGACTAGAGAAGNGGAAACCGTAGACATACAGGT
AGCCTTCCGCTCACGCTATGGATTCATTGCTACTCTATCTTAGACGTATT
TCTATAGATAGAGATGGATTTGTTGTGTGATATTAAGAAGAAAAAAAAAA
TAGGGTATGAACCACTCGGAAAATGAAGACAAAAAGATAGAAAGAAAATA
AAAGGTACCGCACCGTCCGTTCGAGAAAAGAGCCCTCGGAAACCGATCAA
AATCAAAACAAAAACAAAAAAATAGGAGGACGCTTCCCACACCCTCTTAA
GTGTAGCCGGGCGTCTGTTTCGTTTTCATCATGATGATGGTGGCCTGCGA
TGATAGGCTGTACAGGTGGACGTATTTGTGCGTGCTGGTCATCGTTGGAT
GCATAATAAACTGTTGTGTGCCTTTTGGTAAGCAGCTGTTGTCTGATCTT
CCCTCTCTTGTCCGGCCAATCAACCGGCGGCACGTGAAGGCGTTCCATGA
TGGAGTACTGCAGTGTTAATTTTGGGGTGTTGCCGGTTCTTTCCGCATCA
TCGATCGGTTTCCGAATTTTCCAAGAGTTTTCCAAGAAGCAGGTCGAGCG
CGGCGCAAATTCGGCGGGATAACTCTCGCCCGCACATGATGCGGGATCCA
ATCTTTCCGACTCTAAATACCGACATTCCTTCCGATGCTCCTGTTGTGGC
ATACATACATGCGCACATGTCCTTATGATTAACCGAACCCCACGCCCAAT
CAAACACCTTTCTTTCAGGATCTGCGTCAAAGCCGAAGGCTTCGTGCACC
ATCAGCAGCGGCGCGACCCCCACCCCCGCCACCGCCACCGCCACCACCAT
CCTTCAGGGCACAAGCACAGCAGCAGCAGCAGCAGCAAGCAGCCAACCCT
CGTGGAAGTGAGGTCAAAGTGACGACGCATGCGCCGTCACAACGAACGAC
CGTCGGCCGGACGGACGTGTTGCAACCGCTGTCAACCCTGGCCGTCATTT
TCCGTCATGCCGGTGAAGGTTACCGTTTGTTGACACTCAACAGCAACGCG
CTGTTTCGTCTCTTTTTTCCCCCGTCAATGGTGCGGTGGGCAGCGAACGG
TTTGATGAAATGACGCCAGAACCGCCCGCCGTTGGTTGTTTGCAGGGAAG
AGGAGCGACTTTTTTTTCATTGTTTTTGCTTAAGAGAGTTGGCCGTGTAT
TTTTTTTTTGTGTGAAACATCCCGCTCACGCTGGACGCCAGTTTTTTGCA
CCTTTCGGGTGGGTGTGTTTTGGTGGAGGCATCATCAGCCGGGTCACACG
GGGGGGAGGCGCATGCTATTTCGAGAGCTGCTACTTAGAACATTTGTAGT
GTACCATATTTCTTTCGGGCGCAATACTGCTGTGGCAGTGACCTGCAAAA
TAGAGAGCACACGGGGGGGGGGAAATCACACTAGGCATGGGAGAAGCCAC
TGCTTGATTACGAAGAGGGCAACTCGTGTTGTCAACCACGGCTTCAAATG
GTGTTGCAACACTCTGCGCAGCATCTACAGTATGTACATGATATCGTTCG
TTGTAGGCCAAGTACTACGTACGTACCGTGTCCTTTCCTTGTTTAGGAAG
ACGGTAAACAACACTGCAGGGAATGTCGAGATCGAGGAAAAATAGCAGTG
GAGTAACTTTATAGAGGTGATGAACAGTTCGTCGTGGATCTTGATGATAG
ATTATGGTTCTTCGTGTGTAGACTTTTTTGTTATATAGACTGTCTTTTTC
CGGCGTGCTATGCATCACAACCTTTGATCGGAAATATAGGGACCATTGTG
ATATTCGCGCCTGTATCCGAATGGCCATGATATTTTCGAACGGAGTTACT
TCAGCGACTAGACTAGACTATGTTCTGCACGAATTGGCGTTCACCTGGAG
CACGTCAGCATTGCCTGCGAGTTACCCCCGACCAGGTTATCCTCCGGCGT
TTGTACATGCTTGCAGCCCTAGAGGATGATTGGAGAGCGTCATCGCTCTC
AATCGTAACAATGGCCCACGGACATCACGTACGTGTGCTTTGACCTATTG
TTGGTGCTATCCCGGCCTTGCGCCGGTGTTGGTTTGATATTAAAGCTGCT
GTGTGACACCGTGTGATCGCTTCGAAACGGAGCATTCTAGGGATTTTCTA
AAGCAGGAACTGGAGGCCTTTTACGACATGTATATTTCGATGTTGTTAGA
GGGGGGGCAAACGAACAGCCTGGGCAGAATCGACTGCAGCACACGAGTAA
GATTTTTTTCGCCGATGTTCGGGCGGACACCAGTCGTGCGCGATGAAAAA
AGCACGACCGTGTTGGTGCTCAGTAGATCTAGAGTTTTGCATTTTTGAAA
CGGGAAGCGACGGCGGTGGCATTGATTTGCAGCCACAGGGTGCGTGCGTG
CTTGATACTGCTGTAGAGTGGTTGATCGCACGCCGTGAAGCGTTCATGCA
AGGCGAAATTTGTTCACGCACAATAAGACTAGTTGCGTGGCGTTGATCAT
GCGTATTGCCATGCCTACGCGCCGCCGAACGGCGTTGGGTGTTAGCTCGG
AGTTCTTAGGGTGGCGACGGAACGTACCACCGTTCGTCCGCGTACTACAG
TATCACGCGTTACCGTACGGAGAGCAAGTTGAAGTACGTAGACAGTAAAG
CGGTTCAATCATGCGTTTGACGCCCCATATTGTGAGCAATTTAAGGACGC
GCTTCTTGCAAGCAACTATGCCGACGAGGGTCTTAT back to topCoding sequence (CDS) from alignment at Scaffold_347:371209..376194- >EsuBft981_3a-0001 ID=EsuBft981_3a-0001|Name=EsuBft981_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_347:371209..376194- (Ectocarpus subulatus male Bft15b)
ATGGACAACTGGAGACAGGACAAGTGCACCGAAATCAACAAGGCACTCGA
GCGCATCGAGAAGAGAGCAGACAGGGTAAGCCGAATGATGAGCTCCTCTT
CTTCTGCTCTCAACCAAGAAGACCAGCCGCAGCATCAGCAGCAGGAGCAG
CAGCAGCAGCAGCAAGTGGCTACCCTAACCAACGAGCTGGCTAGACTGCA
AGACATGAACAACCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACT
CGAACCTCGGCTACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGA
AAGTAA back to top
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