Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LHW9 |
| ProteomeId | EsuBft981_15 |
| Protein domains | PTHR32134 |
| Protein domains | SSF52058 |
| Protein domains | G3DSA |
| Protein domains | IPR008615 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1131 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.39e-08 |
| EggNOG OGs | 2E9BD@1|root,2SFQ3@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | FNIP Repeat |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft981_15a-0001 ID=EsuBft981_15a-0001|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_347:245580..247553- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTTTATCCGCTAGGTTTAATAGGGCGATCGATGAAGTAACGTGGCC
GCAGTCGCTGAAGAAGCTCACGTTCGGCTGCAACTTTAATCAGCCGGTTC
TAGGGGTACAGTGGCCTCCGGAGCTAGAGGTCCTCACGTTCGGGAGCTGG
TTTGACCGCCCCCTGGCCGGAGTACGCTTCCCGGACACTCTCGCGACCCT
TACCCTGGGGAGGGACTTCAACCAGCCTCTTGAAGGCATCCAATGGCCGC
AGCGGCTGGCTCGTCTGACTTTCGGGTTCTTCTTCAACCGGTCCATCCGA
ACCGCCGCAAAGAACTGGCCGTCCACGCTCAAGCACCTGTCCCTAGGGGA
CTGCTACAACTTGCCTGTCGAAGACGTGGAGTGGCCCCGGGGGTTGGAAG
AGATATCGTTCGGTCGCGGGTTCAACCAAGAAGTTGAGGGAGTTGAATGG
CCTCCGGCCCTGAGAAAGGTCAAGTTCGGGGCTTGCTTCGACCAAAGCAT
CGCCGGTGCCGGCTTTCCAGAAGAGTTGGAGACGCTTGAGCTAGGGTTCG
CCTTCAACCGTCCGTTCCTTGACGTCGTTTTGCCAAGTGGACTTAAGAGG
CTGGTGTTCGGCGAGGAGTTCAACCGTGCCGTGGAGGGCGTCGGTTTTCC
GCCGGGGCTGGAGGAGATTAACTTCGGCGTGCAGTTCGATCAGCCGGTAG
CCGCTGCGGTCTGGCCCGCATCGCTGAAGAAGCTGACGTTTGGGGACAGC
TTCAACAAGCCGCTGGCTGGGATAGGGCTTCCCGACGGCCTGCTGGATTG
CCGCTTCGGGAAGTGTTTCAACCAGGAGATCGAGCAAGTTTCGTGGCCCC
ACAGCGTGCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGC
AACGTAGTTTGGCCCGAATCGCTGACGACGCTGAAGCTGGGGAGCGACTT
CGACCGTAAGATGGAGGCCGGGGTCGTGTTTCCTCCGGGCCTGGATAGGA
TAGAGTTCGTGGACACCTACAGACGTGTGGAAAGCGGCGGAGAGGACAGC
AGTTGACCTGTTCCGGTTTCTCGCCGATAGATGGGCCGTTTAGGAGAGCT
GGAGTGTGACTGATTGGGAAGGCCTTTGTGG back to topprotein sequence of EsuBft981_15a-0001 >EsuBft981_15 ID=EsuBft981_15|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=351bp
MFLSARFNRAIDEVTWPQSLKKLTFGCNFNQPVLGVQWPPELEVLTFGSW
FDRPLAGVRFPDTLATLTLGRDFNQPLEGIQWPQRLARLTFGFFFNRSIR
TAAKNWPSTLKHLSLGDCYNLPVEDVEWPRGLEEISFGRGFNQEVEGVEW
PPALRKVKFGACFDQSIAGAGFPEELETLELGFAFNRPFLDVVLPSGLKR
LVFGEEFNRAVEGVGFPPGLEEINFGVQFDQPVAAAVWPASLKKLTFGDS
FNKPLAGIGLPDGLLDCRFGKCFNQEIEQVSWPHSVRCLVFGEEFNHPIC
NVVWPESLTTLKLGSDFDRKMEAGVVFPPGLDRIEFVDTYRRVESGGEDS
S back to topmRNA from alignment at Scaffold_347:245580..247553- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft981_15a-0001 ID=EsuBft981_15a-0001|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1974bp|location=Sequence derived from alignment at Scaffold_347:245580..247553- (Ectocarpus subulatus male Bft15b)
ATGTTTTTATCCGCTAGGTTTAATAGGGCGATCGATGAAGTAACGTGGCC
GCAGTCGCTGAAGAAGCTCACGTTCGGCTGCAACTTTAATCAGCCGGTTC
TAGGGGTACAGTGGCCTCCGGAGCTAGAGGTACGAAAAGGTGGCATGATG
AATGGGGCGGGGGTAGGAAAGAAAAGCCGTATGCATCATTCGGGAGGGAC
ACTTCCGTCCGTGGAATTGGAGAAATTACCGATGGCGTAGGGCCTAGTGA
TTCCGCAGGGGCTTACCGTTTCGAAAGCAAGGATCTATTTTTGTACACAC
GCGCTGTTTTGCACACTTCGGGGGCGAAACTGGACAGTCAGGAGAATCCC
GCAGCAGTAGTGTACCACCGTCTTAGCTTGAAAGATTGGGCAGTGTGTGC
GAAACTGACCACCGACCAGCTAGGGGACGCAAAGCGACTTCCCAACTACA
GCCTCCTTGCAATGCTTGTGCTGCCTTGGGGGCCAACGTACGCGCGCAGG
TCCTCACGTTCGGGAGCTGGTTTGACCGCCCCCTGGCCGGAGTACGCTTC
CCGGACACTCTCGCGACCCTTACCCTGGGGAGGGACTTCAACCAGCCTCT
TGAAGGCATCCAATGGCCGCAGCGGCTGGCTCGTCTGACTTTCGGGTTCT
TCTTCAACCGGTCCATCCGAACCGCCGCAAAGAACTGGCCGTCCACGCTC
AAGCACCTGTCCCTAGGGGACTGCTACAACTTGCCTGTCGAAGACGTGGA
GTGGCCCCGGGGGTTGGAAGAGGTGAGAGGCCTCCTATGGTTGTCGAATA
AGCACCACCACATGTAGGGCTCAATAGCAATTACTATGTGGTGTACCGCT
GCGGCTACAGATTTGACGGTAGCCCAAATATGTGGTGACTGCGAGAGAAG
AACGCAGGGAGGCGGGGTGGGGAGTAGGGTGATCCCAAGGTTTTTCAACC
CATGGCGGGGTGGGGGGGCACCTCACGAAAGAGTCTGGAACGCGCGGAAG
GGGGGAGGTGCCGATCGGGCGTTCGCGTCCGTGTCCGGCCCTGTAGCAGA
TGGTTTTGAGCGACGCAAACTACATCCTGACCGTCATCACTCCCCGCGGT
ACCCAGACCTGAACCGCACTCGTGAAGGTACCTTTGTGTGTGTTAGTCCC
TGAGCCTCGTCCTCCCCGTCGCTGTCGTTGTCTGGTGCTGGTGAATCTTG
CCTTGTTCGTTGCTGTCCGTCACACACATGCACACGCGCGCGCAGATATC
GTTCGGTCGCGGGTTCAACCAAGAAGTTGAGGGAGTTGAATGGCCTCCGG
CCCTGAGAAAGGTCAAGTTCGGGGCTTGCTTCGACCAAAGCATCGCCGGT
GCCGGCTTTCCAGAAGAGTTGGAGACGCTTGAGCTAGGGTTCGCCTTCAA
CCGTCCGTTCCTTGACGTCGTTTTGCCAAGTGGACTTAAGAGGCTGGTGT
TCGGCGAGGAGTTCAACCGTGCCGTGGAGGGCGTCGGTTTTCCGCCGGGG
CTGGAGGAGATTAACTTCGGCGTGCAGTTCGATCAGCCGGTAGCCGCTGC
GGTCTGGCCCGCATCGCTGAAGAAGCTGACGTTTGGGGACAGCTTCAACA
AGCCGCTGGCTGGGATAGGGCTTCCCGACGGCCTGCTGGATTGCCGCTTC
GGGAAGTGTTTCAACCAGGAGATCGAGCAAGTTTCGTGGCCCCACAGCGT
GCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGCAACGTAG
TTTGGCCCGAATCGCTGACGACGCTGAAGCTGGGGAGCGACTTCGACCGT
AAGATGGAGGCCGGGGTCGTGTTTCCTCCGGGCCTGGATAGGATAGAGTT
CGTGGACACCTACAGACGTGTGGAAAGCGGCGGAGAGGACAGCAGTTGAC
CTGTTCCGGTTTCTCGCCGATAGATGGGCCGTTTAGGAGAGCTGGAGTGT
GACTGATTGGGAAGGCCTTTGTGG back to topCoding sequence (CDS) from alignment at Scaffold_347:245580..247553- >EsuBft981_15a-0001 ID=EsuBft981_15a-0001|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1056bp|location=Sequence derived from alignment at Scaffold_347:245580..247553- (Ectocarpus subulatus male Bft15b)
ATGTTTTTATCCGCTAGGTTTAATAGGGCGATCGATGAAGTAACGTGGCC
GCAGTCGCTGAAGAAGCTCACGTTCGGCTGCAACTTTAATCAGCCGGTTC
TAGGGGTACAGTGGCCTCCGGAGCTAGAGGTCCTCACGTTCGGGAGCTGG
TTTGACCGCCCCCTGGCCGGAGTACGCTTCCCGGACACTCTCGCGACCCT
TACCCTGGGGAGGGACTTCAACCAGCCTCTTGAAGGCATCCAATGGCCGC
AGCGGCTGGCTCGTCTGACTTTCGGGTTCTTCTTCAACCGGTCCATCCGA
ACCGCCGCAAAGAACTGGCCGTCCACGCTCAAGCACCTGTCCCTAGGGGA
CTGCTACAACTTGCCTGTCGAAGACGTGGAGTGGCCCCGGGGGTTGGAAG
AGATATCGTTCGGTCGCGGGTTCAACCAAGAAGTTGAGGGAGTTGAATGG
CCTCCGGCCCTGAGAAAGGTCAAGTTCGGGGCTTGCTTCGACCAAAGCAT
CGCCGGTGCCGGCTTTCCAGAAGAGTTGGAGACGCTTGAGCTAGGGTTCG
CCTTCAACCGTCCGTTCCTTGACGTCGTTTTGCCAAGTGGACTTAAGAGG
CTGGTGTTCGGCGAGGAGTTCAACCGTGCCGTGGAGGGCGTCGGTTTTCC
GCCGGGGCTGGAGGAGATTAACTTCGGCGTGCAGTTCGATCAGCCGGTAG
CCGCTGCGGTCTGGCCCGCATCGCTGAAGAAGCTGACGTTTGGGGACAGC
TTCAACAAGCCGCTGGCTGGGATAGGGCTTCCCGACGGCCTGCTGGATTG
CCGCTTCGGGAAGTGTTTCAACCAGGAGATCGAGCAAGTTTCGTGGCCCC
ACAGCGTGCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGC
AACGTAGTTTGGCCCGAATCGCTGACGACGCTGAAGCTGGGGAGCGACTT
CGACCGTAAGATGGAGGCCGGGGTCGTGTTTCCTCCGGGCCTGGATAGGA
TAGAGTTCGTGGACACCTACAGACGTGTGGAAAGCGGCGGAGAGGACAGC
AGTTGA back to top
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