EsuBft981_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft981_14a-0001
Unique NameEsuBft981_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:248157..251736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHW9
ProteomeIdEsuBft981_14
Protein domainsPTHR25952
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized transposon-derived protein os:caenorhabditis elegans gn: pe:5 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length2341
Hectar predicted targeting categoryother localisation
Evalue3.44e-85
EggNOG OGs2E9BD@1|root,2SFQ3@2759|Eukaryota
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-18_000780.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionFNIP Repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft981_14aEsuBft981_14aEctocarpus subulatus male Bft15bgeneScaffold_347 248157..251736 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_14a-0001-exonagat-exon-78792Ectocarpus subulatus male Bft15bexonScaffold_347 248157..249600 -
EsuBft981_14a-0001-exonEsuBft981_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 250840..251736 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_14a-0001-exonagat-three_prime_utr-23752Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 248157..249085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_14a-0001-cdsEsuBft981_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 249086..249600 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_14a-0001-exonagat-five_prime_utr-15467Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 251648..251736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_14a-0001EsuBft981_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 249086..251647 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft981_14a-0001 ID=EsuBft981_14a-0001|Name=EsuBft981_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2341bp|location=Sequence derived from alignment at Scaffold_347:248157..251736- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGG
GAGACACCCCTTGACCGAATACGGAGGGCAGTATGGGGAATGCTGTATGC
CGATGATGCCGGCGTCGTATCGAGGTCTGAAGAAGGACTGGCGAGAATGA
TGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAG
AAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGACAAGCCGACTACAAC
ATCACAGCCCGCCGCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAAA
ACTACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAA
CATGGCGACCTCACCCGGGAGATCAGCCACAGGAGCAGAGGAGCGTGGGC
GTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGCAAGCGCCAT
TCCGACTCAAGATCCGCCTGCTCCAGGCGGAGGCGATGGAGGCACTGCTG
TACGGCTGCATGACATGGTCACCACTCAGCGGTCACTATCAGACGCTGCG
GTCGATACACCACCGACTGCTCCTTCGAGTTATCGGGTACAAGCGTAAGA
AAGACACATACCGGCAGCTCTCTTACGCCCAGACGCTGAAGAGGGTCGAA
TGCCAGAGCGTTGAAGCCACGATCCGACAACGGCGCCTACTGCTCGCGGG
AGCATTGGCAAGGCAGTCGGACGGGCGACTCCCGAAACGACTGATGCTCG
GCGAACTGGCAGGGGGGGAGCAGCGACGTAAATGGGGACAGGAACAGAAC
TGGCCGACTTGTGTGCTCGACTACCTGAAGGCATTCGAGGCCGACCACGG
ATCTACGAAAACCGACCCATGTTGTCTCGGAATCCCGGTACCGAAAGGTC
GTTCGAACATGGCTTCTGGTGTACCACCTGTTGAAGATGGGCAGGGCGTT
ACTGCTGCCGTTGCTGCAGGAGGAACCGCGGCGACGACACTGGGAGCTCT
GCGGGTAGTCATCGCTTCCGGGTGGGTCGCGCGGACGATATCCTTGCAAG
TGGCATCTGTGGAGACGCTCCGAAGCTGCCGCGAGGTCGCGAACTTCCGG
CTGAGAATAGCTCGCAAGACTCCGAGGAGGGTTTACCAAGACAAGTTCGC
GGGTGGCGGCCGCGGCAGAGTTAGCCGCAGCATTATCTTGCCCCGCGTTG
TCCGCGTGCTGTACGATCGGTCGGAGTTCGACCTCAAGCCTGGCTGGGCG
CTGCCGGTCGAGTTGGTCGGGCTTGTTCTTGGGACGGAGTTTTGCGGAGA
CCTGAAAGGGGTTCCCTGGCCCCCGACCCTGAGCTCGATAGTATTTTGGC
GGAGGTGCGTGCAATTGGGACGGCGAGAGTTGCCTTTTTGGCGGTTGGGC
AAAGACATGTAGATTTTCTTGTACAGCAGTAGATGGACGAATAGAATCCC
GTCCGGGGTCTCAGCACGGTCCGGAGTCATCGCACAGAGGGTTCGATGCA
AGTATTGGCCTAGACTAAGGGTACCCGGACAACCTCCTGCTATGTTGCCT
AATTTCGAAAACAAACGCAAGAGCGCCAGAAAATGCACTAGAGACACATA
AGACCAGTCGGAAGGCATCGCAAAAAAAACAAGTCCAAAATTCTGGCACA
GGGCAGCAGTAGAGACCGCTCAAAACGTGCCTTTCGCGCGTCTACCTCCA
CACGCATCCTTTGAAACCAAGATAAAAATCCACACCAGTCTAAATTCAAG
TCAAAAGAGCCCAAACGGAAGGCGCTCAAATAAGGCCGGTGTTGCTAGGA
ACCTGGTCCATTGTACCAATATCACTAGAGGACACCCTATAGCAGCGGGG
GTGTGTGTTGGCGCGCTCAAAACTTCTTCTGTGGTGGTGGTATCTAGTGT
CGTTGTAGTGGCCCACAATCTCCGCAAATCTCCGCAAGTTAGATCGACAC
CCAGTGTCTTGTACTGCTTGTGCTCGCCGCCACTGAACCCAATCTTCTGA
ACTGCAGGTTTACAGCAGTAGCTGATGCCACCAGCTACTGCTGACAACCC
GCAGTTGAGGGGTTTGCGGTCCGTGGTGGTGAGCACCGCTGTGACAAGTG
TTGGGTTCCGCTTGGTTCCGGCGCAGATTTCGGACCGTTTCAGAGGCTGC
TGCGACCTTCGATATTTCAGCCCCAGTAGTATACCTGAACGTGCCAGCAC
GCACGACGCCTCTTGATGATATCCTCCACTGATACTAGCACAACGGACCA
GGTTCCTCCGGCGGGAAGGTTGTTTTCTTTCTTTGTACTGTTATAAAGTA
TGAGAAAAGAGCCAGCGTCAAAATCCCTTGTCTGGGTACCC
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protein sequence of EsuBft981_14a-0001

>EsuBft981_14 ID=EsuBft981_14|Name=EsuBft981_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=440bp
MLYADDAGVVSRSEEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDK
PTTTSQPAAPPPLTIEAAGQNYAQTTEFRYLGGLVNEHGDLTREISHRSR
GAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHY
QTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRL
LLAGALARQSDGRLPKRLMLGELAGGEQRRKWGQEQNWPTCVLDYLKAFE
ADHGSTKTDPCCLGIPVPKGRSNMASGVPPVEDGQGVTAAVAAGGTAATT
LGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQ
DKFAGGGRGRVSRSIILPRVVRVLYDRSEFDLKPGWALPVELVGLVLGTE
FCGDLKGVPWPPTLSSIVFWRRCVQLGRRELPFWRLGKDM
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mRNA from alignment at Scaffold_347:248157..251736-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft981_14a-0001 ID=EsuBft981_14a-0001|Name=EsuBft981_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3580bp|location=Sequence derived from alignment at Scaffold_347:248157..251736- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGG
GAGACACCCCTTGACCGAATACGGAGGGCAGTATGGGGAATGCTGTATGC
CGATGATGCCGGCGTCGTATCGAGGTCTGAAGAAGGACTGGCGAGAATGA
TGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAG
AAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGACAAGCCGACTACAAC
ATCACAGCCCGCCGCGCCTCCACCGCTGACCATCGAAGCCGCGGGACAAA
ACTACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAA
CATGGCGACCTCACCCGGGAGATCAGCCACAGGAGCAGAGGAGCGTGGGC
GTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGCAAGCGCCAT
TCCGACTCAAGATCCGCCTGCTCCAGGCGGAGGCGATGGAGGCACTGCTG
TACGGCTGCATGACATGGTCACCACTCAGCGGTCACTATCAGACGCTGCG
GTCGATACACCACCGACTGCTCCTTCGAGTTATCGGGTACAAGCGTAAGA
AAGACACATACCGGCAGCTCTCTTACGCCCAGACGCTGAAGAGGGTCGAA
TGCCAGAGCGTTGAAGCCACGATCCGACAACGGCGCCTACTGCTCGCGGG
AGCATTGGCAAGGCAGTCGGACGGGCGACTCCCGAAACGACTGATGCTCG
GCGAACTGGCAGGGGGGGAGCAGCGACGTAAATGGGGACAGGAACAGAAC
TGGCCGACTTGTGTGCTCGACTACCTGAAGGCATTCGAGGCCGACCACGG
ATCTACGAAAACCGACCCATGTTGTCTCGGAATCCCGGTACCGAAAGGTA
CGGCACCGAAGTTTAAGTGGACGGAAGCCGCGAAGGTGTAGGGGGGAGTA
CCCTGTCATGCGGCGGTGCTGCAGGGAGCTGAGAGGTTCATGACCTCCTG
GCACGAGAAGGAAGAAGACGCCAGCCGACAACGGGCGCTCAAACGAAACC
ACAAGCCAACAACCAATGGGGCGGGAGGGGGGCAGGAGACGGACGACGAG
GGAAGAAAGCAAACGAGAAGAAACGGACCGAATGGTGCGATACGTGCCGG
ATTGAATTTCTGTTAGCCAATTCCCCCCCACCCAACGCTGCACCATTGCA
CCAACCCCCCACTAGTGATGACGAACCATTACCATGTATCGCTGGTTGGT
GGCCACGTTTGCGTGTTTGCTTCTCGTTAGTGGTCTCTCCACCGTGTGCC
TTTTTCTGAGTCTCTTACTGCTGTTGTTTTCGGCCTGGTCCCTTTTTGTC
CTCGCTCTGTGTATTAATTCTCTTTACTTACTGTTTCCTTTTATTTTCTC
ATATTTTTCCCTTTTTCTCTCTTTTTCTGTGCCACATGGCCTTGTCTCTG
CTTGCGTTGTGAAGTACCAAGATTGAACCAAGGGGGGTGTACCTCTTTCT
CTCCGGCCCGTGATGGTGACTCCTAGTCTTAGTTGTTACCTCGCATACCG
CGCAGAGGGAGTGGAGGACTCCAGAATATCTGTCGTTGATTTCTATTGAC
TTGCGGACCCCTCGGGACCATTTTATTTGGGTGTACCTGTTTAGGGTATG
TTAGCCTGCGACCACGGGAATCGACCGCGTCAAGTGTTGTATCAGTACGG
ACATACAAAGGTACTGGGTAGAGAGAGATCGGAACGGTTTTTAATGTGAA
AGACAACAACAACAACAATCATAGACTAAAATGTATGTGCGGATGCAGTG
CGAAACAAACCCAATGGGCAAACCTGTCCGATTGCCACGCCGTGATGGGC
TTCAGTAGACCCAGGAACAACAATTCGCCGGCAATCTTCATTGTCTTATC
GGGGCACACGAGGTGTGAGGGCCGTTTTGCGGCGTTGTGAGCAATGGTAT
ATGAGTTTGACTTGTCGGGGGCTCGAAAGCCGGAGGAAGCAGCCCCCCCT
TTCTCCATACCACGGGGCCGCTGCACGTGTTTGACATTTTGTGACAATGC
TCCGCTCCCCTCCCACCTGCCATGCACACTCACTTTGCTTCAGACTTGTG
TTGCATCGATCATCTCATCTACCTTGACAGAGGCAGGTCGTTCGAACATG
GCTTCTGGTGTACCACCTGTTGAAGATGGGCAGGGCGTTACTGCTGCCGT
TGCTGCAGGAGGAACCGCGGCGACGACACTGGGAGCTCTGCGGGTAGTCA
TCGCTTCCGGGTGGGTCGCGCGGACGATATCCTTGCAAGTGGCATCTGTG
GAGACGCTCCGAAGCTGCCGCGAGGTCGCGAACTTCCGGCTGAGAATAGC
TCGCAAGACTCCGAGGAGGGTTTACCAAGACAAGTTCGCGGGTGGCGGCC
GCGGCAGAGTTAGCCGCAGCATTATCTTGCCCCGCGTTGTCCGCGTGCTG
TACGATCGGTCGGAGTTCGACCTCAAGCCTGGCTGGGCGCTGCCGGTCGA
GTTGGTCGGGCTTGTTCTTGGGACGGAGTTTTGCGGAGACCTGAAAGGGG
TTCCCTGGCCCCCGACCCTGAGCTCGATAGTATTTTGGCGGAGGTGCGTG
CAATTGGGACGGCGAGAGTTGCCTTTTTGGCGGTTGGGCAAAGACATGTA
GATTTTCTTGTACAGCAGTAGATGGACGAATAGAATCCCGTCCGGGGTCT
CAGCACGGTCCGGAGTCATCGCACAGAGGGTTCGATGCAAGTATTGGCCT
AGACTAAGGGTACCCGGACAACCTCCTGCTATGTTGCCTAATTTCGAAAA
CAAACGCAAGAGCGCCAGAAAATGCACTAGAGACACATAAGACCAGTCGG
AAGGCATCGCAAAAAAAACAAGTCCAAAATTCTGGCACAGGGCAGCAGTA
GAGACCGCTCAAAACGTGCCTTTCGCGCGTCTACCTCCACACGCATCCTT
TGAAACCAAGATAAAAATCCACACCAGTCTAAATTCAAGTCAAAAGAGCC
CAAACGGAAGGCGCTCAAATAAGGCCGGTGTTGCTAGGAACCTGGTCCAT
TGTACCAATATCACTAGAGGACACCCTATAGCAGCGGGGGTGTGTGTTGG
CGCGCTCAAAACTTCTTCTGTGGTGGTGGTATCTAGTGTCGTTGTAGTGG
CCCACAATCTCCGCAAATCTCCGCAAGTTAGATCGACACCCAGTGTCTTG
TACTGCTTGTGCTCGCCGCCACTGAACCCAATCTTCTGAACTGCAGGTTT
ACAGCAGTAGCTGATGCCACCAGCTACTGCTGACAACCCGCAGTTGAGGG
GTTTGCGGTCCGTGGTGGTGAGCACCGCTGTGACAAGTGTTGGGTTCCGC
TTGGTTCCGGCGCAGATTTCGGACCGTTTCAGAGGCTGCTGCGACCTTCG
ATATTTCAGCCCCAGTAGTATACCTGAACGTGCCAGCACGCACGACGCCT
CTTGATGATATCCTCCACTGATACTAGCACAACGGACCAGGTTCCTCCGG
CGGGAAGGTTGTTTTCTTTCTTTGTACTGTTATAAAGTATGAGAAAAGAG
CCAGCGTCAAAATCCCTTGTCTGGGTACCC
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Coding sequence (CDS) from alignment at Scaffold_347:248157..251736-

>EsuBft981_14a-0001 ID=EsuBft981_14a-0001|Name=EsuBft981_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1323bp|location=Sequence derived from alignment at Scaffold_347:248157..251736- (Ectocarpus subulatus male Bft15b)
ATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGAAGAAGGACT
GGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTAA
CGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGACAAG
CCGACTACAACATCACAGCCCGCCGCGCCTCCACCGCTGACCATCGAAGC
CGCGGGACAAAACTACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCC
TCGTCAACGAACATGGCGACCTCACCCGGGAGATCAGCCACAGGAGCAGA
GGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACC
GCAAGCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGGCGATGG
AGGCACTGCTGTACGGCTGCATGACATGGTCACCACTCAGCGGTCACTAT
CAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTTATCGGGTA
CAAGCGTAAGAAAGACACATACCGGCAGCTCTCTTACGCCCAGACGCTGA
AGAGGGTCGAATGCCAGAGCGTTGAAGCCACGATCCGACAACGGCGCCTA
CTGCTCGCGGGAGCATTGGCAAGGCAGTCGGACGGGCGACTCCCGAAACG
ACTGATGCTCGGCGAACTGGCAGGGGGGGAGCAGCGACGTAAATGGGGAC
AGGAACAGAACTGGCCGACTTGTGTGCTCGACTACCTGAAGGCATTCGAG
GCCGACCACGGATCTACGAAAACCGACCCATGTTGTCTCGGAATCCCGGT
ACCGAAAGGTCGTTCGAACATGGCTTCTGGTGTACCACCTGTTGAAGATG
GGCAGGGCGTTACTGCTGCCGTTGCTGCAGGAGGAACCGCGGCGACGACA
CTGGGAGCTCTGCGGGTAGTCATCGCTTCCGGGTGGGTCGCGCGGACGAT
ATCCTTGCAAGTGGCATCTGTGGAGACGCTCCGAAGCTGCCGCGAGGTCG
CGAACTTCCGGCTGAGAATAGCTCGCAAGACTCCGAGGAGGGTTTACCAA
GACAAGTTCGCGGGTGGCGGCCGCGGCAGAGTTAGCCGCAGCATTATCTT
GCCCCGCGTTGTCCGCGTGCTGTACGATCGGTCGGAGTTCGACCTCAAGC
CTGGCTGGGCGCTGCCGGTCGAGTTGGTCGGGCTTGTTCTTGGGACGGAG
TTTTGCGGAGACCTGAAAGGGGTTCCCTGGCCCCCGACCCTGAGCTCGAT
AGTATTTTGGCGGAGGTGCGTGCAATTGGGACGGCGAGAGTTGCCTTTTT
GGCGGTTGGGCAAAGACATGTAG
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