Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005100548.1 |
| ProteomeId | EsuBft981_13 |
| Protein domains | PTHR19446 |
| Protein domains | SSF56672 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 1153 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.73e-65 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006259 |
| EC | 3.1 |
| GO | 0004518 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft981_13a-0001 ID=EsuBft981_13a-0001|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1153bp|location=Sequence derived from alignment at Scaffold_347:251780..252932- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTG
TAAGGGAGTGGCTACAGCAGTCGAAATGGGCATTTATGCCGACCTGGGCG
GATATGTGACGGAACTCGAAGCAATCTACAAAGATCGCGACATGCGAGGA
TTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGG
GGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGG
ACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTTCTCCGCACC
GAATTCCCCACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGACC
AGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGG
TGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCGGCCATGAC
TCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCCTTCGTCCT
GGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGGAGATGTTC
CGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAGAAGGGTGAC
CGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCACGTAGG
CAAGGTCCCCATCAAGATCATCACCAACTGTCTAACCGCCTTCTGCGAAG
CCAACAACATCCTCCCGGAGGAACAGGGCGGATTTCGACCCGGGCGATCC
ACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAG
AAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATG
ATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATT
CCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGC
CCGGGTGCGCATGGACGACGGAAAACTATCGAACTGCTTCTTCGTTACAC
AGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCATC
TTCGCGGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN back to topprotein sequence of EsuBft981_13a-0001 >EsuBft981_13 ID=EsuBft981_13|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=368bp
MRGNWNSATWRVLKAACKGVATAVEMGIYADLGGYVTELEAIYKDRDMRG
LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLRT
EFPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHD
SLPAELLKIDDDEPFVLGHLHTILVKVWNGGDVPREWKDATIKVLYKKGD
RSNCNNYRGISLLSHVGKVPIKIITNCLTAFCEANNILPEEQGGFRPGRS
TVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGI
PAKLIEVIRQFHDGMRARVRMDDGKLSNCFFVTQGVRQGCVLSPLLFNII
FAEVLEVVVIRFSEDDVX back to topmRNA from alignment at Scaffold_347:251780..252932- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft981_13a-0001 ID=EsuBft981_13a-0001|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1153bp|location=Sequence derived from alignment at Scaffold_347:251780..252932- (Ectocarpus subulatus male Bft15b)
ATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTG
TAAGGGAGTGGCTACAGCAGTCGAAATGGGCATTTATGCCGACCTGGGCG
GATATGTGACGGAACTCGAAGCAATCTACAAAGATCGCGACATGCGAGGA
TTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGG
GGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGG
ACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTTCTCCGCACC
GAATTCCCCACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGACC
AGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGG
TGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCGGCCATGAC
TCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCCTTCGTCCT
GGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGGAGATGTTC
CGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAGAAGGGTGAC
CGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCACGTAGG
CAAGGTCCCCATCAAGATCATCACCAACTGTCTAACCGCCTTCTGCGAAG
CCAACAACATCCTCCCGGAGGAACAGGGCGGATTTCGACCCGGGCGATCC
ACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAG
AAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATG
ATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATT
CCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGC
CCGGGTGCGCATGGACGACGGAAAACTATCGAACTGCTTCTTCGTTACAC
AGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCATC
TTCGCGGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN back to topCoding sequence (CDS) from alignment at Scaffold_347:251780..252932- >EsuBft981_13a-0001 ID=EsuBft981_13a-0001|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1104bp|location=Sequence derived from alignment at Scaffold_347:251780..252932- (Ectocarpus subulatus male Bft15b)
ATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTG
TAAGGGAGTGGCTACAGCAGTCGAAATGGGCATTTATGCCGACCTGGGCG
GATATGTGACGGAACTCGAAGCAATCTACAAAGATCGCGACATGCGAGGA
TTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGG
GGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGG
ACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTTCTCCGCACC
GAATTCCCCACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGACC
AGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGG
TGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCGGCCATGAC
TCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCCTTCGTCCT
GGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGGAGATGTTC
CGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAGAAGGGTGAC
CGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCACGTAGG
CAAGGTCCCCATCAAGATCATCACCAACTGTCTAACCGCCTTCTGCGAAG
CCAACAACATCCTCCCGGAGGAACAGGGCGGATTTCGACCCGGGCGATCC
ACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAG
AAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATG
ATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATT
CCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGC
CCGGGTGCGCATGGACGACGGAAAACTATCGAACTGCTTCTTCGTTACAC
AGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCATC
TTCGCGGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGT
NNNN back to top
|