EsuBft980_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft980_7a-0001
Unique Name	EsuBft980_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_562	contig	Scaffold_562:314620..316530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft980_7
Protein domains	Coil
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	191
Hectar predicted targeting category	other localisation
Evalue	5.8e-29
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft980_7a	EsuBft980_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_562 314620..316530 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft980_7a-0001-exon	EsuBft980_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 314620..316530 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft980_7a-0001-exon	agat-three_prime_utr-23740	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_562 314620..315354 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft980_7a-0001-cds	EsuBft980_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_562 315355..316458 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft980_7a-0001-exon	agat-five_prime_utr-15461	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_562 316459..316530 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft980_7a-0001	EsuBft980_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_562 315355..316458 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_562:314620..316530-
coding sequence from alignment at Scaffold_562:314620..316530-

spliced messenger RNA

>EsuBft980_7a-0001 ID=EsuBft980_7a-0001|Name=EsuBft980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1911bp|location=Sequence derived from alignment at Scaffold_562:314620..316530- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGCCCTTGTGCTCGACGGCCACGCCTCACACACGACCTTCGACGCCAT
CAGCTTGGGCATCTCCCTGGACATGGACCTATTCCAGCTTCCATCCCACA
CATCGCACATCACCCAGCCCTTGGACGTCGGTACGTTCGGAACCTTCAAG
ATGGAGATCACCAAGGTGCTCACGGCCTACCCGCTAAAGAACGGGGGGAG
GAGTCCGGTGAAGCGCGACATGGCTGGCGTGATTGCGGAGGCATGGGCAG
GGAGCTTCACGCCTGAGAACAACAAGGCGGCGTTCAAAGGGTCGGGCTTG
TGGCCGGTGAGCATGGAGAAAGCTATCAACAGACTACACAGCAAGAGGAA
GCAACGGGACCATGACCGCCCTATTCGTGAAGACCTCGCCGTGGTTGCCT
CTAAGGATCAACTCGAGCGAGACCTCGGCCGCGCTGCCCTCCTGGAGCTG
AAAAGACACGGGCTGATGATCGAGGGGCTCCGTGTCAACACCGTGTTCCT
TGGCGGGCTCACCCGCCTCACCAAGCGCACCAAGGCTTTCGCGACCGTTC
GGGCGGGGGGGGGGAAGCCCGAAGGTGGTCTGCTGTCCGCCGAAGAACAT
CTTGCTCAGGCCAAGAAGGACCAAGAAGCGAAGCAGGCAGCTGAGGAAGC
AAAGGCGGCACGCGCGGAGGCAAGGGCAACGAAGGAGGCCAACCAACAAT
CTGGAGCAGTTGGTGGGCGGGGCGGCGGGCAGGGCGGCGGGCGGGGCGGC
GGGCGGGGCGGCGGGCGGGGCGGCGGGCGAGAGGGGGGGAGAGGTGGAGG
GCGCGAGGGTGGGAGAGGTGGAGGGCGGAGCGGGGGGCGTGGCGAAGGAC
GGGGCGGGGAACAGGACGGAGGGCGGGGAGAGAGGAGCGTGAGGGTTGAG
CTAAGCGGGACGCGGACGGCGATCAGGGGGCGCGGTGGCGGTGGGCGAGA
GGGGCGTGGCAGAGGACAGGGTGGCCAGGACCGCACCACTGGTGCTCGTG
GAGAGCAAATGGGGGCGGGAGGGCGGGGGGGGGACGAGGGGAGAGGTGCT
CCCGTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGCGGTTCCCTTGGT
TCACCCGCCGCCGTCGGCGGCTCCCATTTCTTCCCGAGGACGGCAGCGGA
TCCCGACACCAATCGTTGATGTTTAGACCAGGGCAGATGCTTTGCGGTTG
TTGTTGTTTTTCTGGGCTACTATTGTCTAGGCGGTGGATGAATTAGACTA
TACGAGTAAAGCAGAAGATTAGGTGGTTTGTGGGGGCATGTGGAGATGGT
TAGGGTGCACCCCAGCAGCGCGGGGGGGGCGGGGGGGTTGATACCGGGAA
ACCCGGGGATATGGTAATTTTGTCCCCGGGCATGCATGATTTTTTTTTTT
TTTTCAACAGCGTTTCTTGTGATAAAACAAACCTACACACCAAAGGGCGT
CTTGTGGGAATGTAAGATGACTGTGAAAAAAGGGAAATGGCCTTGGGGTT
CTTGCGGAGAATTATAGCGGTAGCGGCCGGGTCAAGGGGTGCCTGTTTGA
ACGGGCATTACATCACATGCGCGAAGTTTTTCGTCCTAATTTTTTTTTCT
TGAGTCTGTATATGATCAGATTAGACCCACTGTGCAATAATCTCTTAGTT
TTGGCTCTTTTCATGTGTGCAGCACCGCCGTACGGTCAAAAATGGGGTAA
AATCCGTCCCCGATTTCAGGCGGAAAACCCGGGGATGTGAGGATTTTGTC
CCCGGGCGTGGATCGATTCCATTTTTTTTTTTCCTAAACGGATATATGTT
GCGACAGACGTATCTCCACAAAAAATCAGATCATGAAACGCTTCAGAACG
CACGAAAGCAGCTACAAAGCTAAAGTGTTCGTTAATTGGGGGGGGGGGTT
TTTCCTGCATT

protein sequence of EsuBft980_7a-0001

>EsuBft980_7 ID=EsuBft980_7|Name=EsuBft980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=367bp
MDLFQLPSHTSHITQPLDVGTFGTFKMEITKVLTAYPLKNGGRSPVKRDM
AGVIAEAWAGSFTPENNKAAFKGSGLWPVSMEKAINRLHSKRKQRDHDRP
IREDLAVVASKDQLERDLGRAALLELKRHGLMIEGLRVNTVFLGGLTRLT
KRTKAFATVRAGGGKPEGGLLSAEEHLAQAKKDQEAKQAAEEAKAARAEA
RATKEANQQSGAVGGRGGGQGGGRGGGRGGGRGGGREGGRGGGREGGRGG
GRSGGRGEGRGGEQDGGRGERSVRVELSGTRTAIRGRGGGGREGRGRGQG
GQDRTTGARGEQMGAGGRGGDEGRGAPVQGGAGRPRGAAVPLVHPPPSAA
PISSRGRQRIPTPIVDV

mRNA from alignment at Scaffold_562:314620..316530-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft980_7a-0001 ID=EsuBft980_7a-0001|Name=EsuBft980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1911bp|location=Sequence derived from alignment at Scaffold_562:314620..316530- (Ectocarpus subulatus male Bft15b)
GCTGCCCTTGTGCTCGACGGCCACGCCTCACACACGACCTTCGACGCCAT
CAGCTTGGGCATCTCCCTGGACATGGACCTATTCCAGCTTCCATCCCACA
CATCGCACATCACCCAGCCCTTGGACGTCGGTACGTTCGGAACCTTCAAG
ATGGAGATCACCAAGGTGCTCACGGCCTACCCGCTAAAGAACGGGGGGAG
GAGTCCGGTGAAGCGCGACATGGCTGGCGTGATTGCGGAGGCATGGGCAG
GGAGCTTCACGCCTGAGAACAACAAGGCGGCGTTCAAAGGGTCGGGCTTG
TGGCCGGTGAGCATGGAGAAAGCTATCAACAGACTACACAGCAAGAGGAA
GCAACGGGACCATGACCGCCCTATTCGTGAAGACCTCGCCGTGGTTGCCT
CTAAGGATCAACTCGAGCGAGACCTCGGCCGCGCTGCCCTCCTGGAGCTG
AAAAGACACGGGCTGATGATCGAGGGGCTCCGTGTCAACACCGTGTTCCT
TGGCGGGCTCACCCGCCTCACCAAGCGCACCAAGGCTTTCGCGACCGTTC
GGGCGGGGGGGGGGAAGCCCGAAGGTGGTCTGCTGTCCGCCGAAGAACAT
CTTGCTCAGGCCAAGAAGGACCAAGAAGCGAAGCAGGCAGCTGAGGAAGC
AAAGGCGGCACGCGCGGAGGCAAGGGCAACGAAGGAGGCCAACCAACAAT
CTGGAGCAGTTGGTGGGCGGGGCGGCGGGCAGGGCGGCGGGCGGGGCGGC
GGGCGGGGCGGCGGGCGGGGCGGCGGGCGAGAGGGGGGGAGAGGTGGAGG
GCGCGAGGGTGGGAGAGGTGGAGGGCGGAGCGGGGGGCGTGGCGAAGGAC
GGGGCGGGGAACAGGACGGAGGGCGGGGAGAGAGGAGCGTGAGGGTTGAG
CTAAGCGGGACGCGGACGGCGATCAGGGGGCGCGGTGGCGGTGGGCGAGA
GGGGCGTGGCAGAGGACAGGGTGGCCAGGACCGCACCACTGGTGCTCGTG
GAGAGCAAATGGGGGCGGGAGGGCGGGGGGGGGACGAGGGGAGAGGTGCT
CCCGTCCAAGGAGGAGCGGGACGGCCGAGAGGGGCGGCGGTTCCCTTGGT
TCACCCGCCGCCGTCGGCGGCTCCCATTTCTTCCCGAGGACGGCAGCGGA
TCCCGACACCAATCGTTGATGTTTAGACCAGGGCAGATGCTTTGCGGTTG
TTGTTGTTTTTCTGGGCTACTATTGTCTAGGCGGTGGATGAATTAGACTA
TACGAGTAAAGCAGAAGATTAGGTGGTTTGTGGGGGCATGTGGAGATGGT
TAGGGTGCACCCCAGCAGCGCGGGGGGGGCGGGGGGGTTGATACCGGGAA
ACCCGGGGATATGGTAATTTTGTCCCCGGGCATGCATGATTTTTTTTTTT
TTTTCAACAGCGTTTCTTGTGATAAAACAAACCTACACACCAAAGGGCGT
CTTGTGGGAATGTAAGATGACTGTGAAAAAAGGGAAATGGCCTTGGGGTT
CTTGCGGAGAATTATAGCGGTAGCGGCCGGGTCAAGGGGTGCCTGTTTGA
ACGGGCATTACATCACATGCGCGAAGTTTTTCGTCCTAATTTTTTTTTCT
TGAGTCTGTATATGATCAGATTAGACCCACTGTGCAATAATCTCTTAGTT
TTGGCTCTTTTCATGTGTGCAGCACCGCCGTACGGTCAAAAATGGGGTAA
AATCCGTCCCCGATTTCAGGCGGAAAACCCGGGGATGTGAGGATTTTGTC
CCCGGGCGTGGATCGATTCCATTTTTTTTTTTCCTAAACGGATATATGTT
GCGACAGACGTATCTCCACAAAAAATCAGATCATGAAACGCTTCAGAACG
CACGAAAGCAGCTACAAAGCTAAAGTGTTCGTTAATTGGGGGGGGGGGTT
TTTCCTGCATT

Coding sequence (CDS) from alignment at Scaffold_562:314620..316530-

>EsuBft980_7a-0001 ID=EsuBft980_7a-0001|Name=EsuBft980_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1104bp|location=Sequence derived from alignment at Scaffold_562:314620..316530- (Ectocarpus subulatus male Bft15b)
ATGGACCTATTCCAGCTTCCATCCCACACATCGCACATCACCCAGCCCTT
GGACGTCGGTACGTTCGGAACCTTCAAGATGGAGATCACCAAGGTGCTCA
CGGCCTACCCGCTAAAGAACGGGGGGAGGAGTCCGGTGAAGCGCGACATG
GCTGGCGTGATTGCGGAGGCATGGGCAGGGAGCTTCACGCCTGAGAACAA
CAAGGCGGCGTTCAAAGGGTCGGGCTTGTGGCCGGTGAGCATGGAGAAAG
CTATCAACAGACTACACAGCAAGAGGAAGCAACGGGACCATGACCGCCCT
ATTCGTGAAGACCTCGCCGTGGTTGCCTCTAAGGATCAACTCGAGCGAGA
CCTCGGCCGCGCTGCCCTCCTGGAGCTGAAAAGACACGGGCTGATGATCG
AGGGGCTCCGTGTCAACACCGTGTTCCTTGGCGGGCTCACCCGCCTCACC
AAGCGCACCAAGGCTTTCGCGACCGTTCGGGCGGGGGGGGGGAAGCCCGA
AGGTGGTCTGCTGTCCGCCGAAGAACATCTTGCTCAGGCCAAGAAGGACC
AAGAAGCGAAGCAGGCAGCTGAGGAAGCAAAGGCGGCACGCGCGGAGGCA
AGGGCAACGAAGGAGGCCAACCAACAATCTGGAGCAGTTGGTGGGCGGGG
CGGCGGGCAGGGCGGCGGGCGGGGCGGCGGGCGGGGCGGCGGGCGGGGCG
GCGGGCGAGAGGGGGGGAGAGGTGGAGGGCGCGAGGGTGGGAGAGGTGGA
GGGCGGAGCGGGGGGCGTGGCGAAGGACGGGGCGGGGAACAGGACGGAGG
GCGGGGAGAGAGGAGCGTGAGGGTTGAGCTAAGCGGGACGCGGACGGCGA
TCAGGGGGCGCGGTGGCGGTGGGCGAGAGGGGCGTGGCAGAGGACAGGGT
GGCCAGGACCGCACCACTGGTGCTCGTGGAGAGCAAATGGGGGCGGGAGG
GCGGGGGGGGGACGAGGGGAGAGGTGCTCCCGTCCAAGGAGGAGCGGGAC
GGCCGAGAGGGGCGGCGGTTCCCTTGGTTCACCCGCCGCCGTCGGCGGCT
CCCATTTCTTCCCGAGGACGGCAGCGGATCCCGACACCAATCGTTGATGT
TTAG