EsuBft97_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft97_8a-0001
Unique NameEsuBft97_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:389571..392868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FKE2
ProteomeIdEsuBft97_8
Protein domainsIPR005772
Protein domainsPTHR13861
Protein domainsIPR008218
Ownerapollo_admin@sb-roscoff.fr
Notev-type proton atpase subunit f os:arabidopsis thaliana gn:vha-f pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1122
Hectar predicted targeting categoryother localisation
Evalue2.41e-77
EggNOG OGsCOG1436@1|root,KOG3432@2759|Eukaryota
Ec32 ortholog descriptionATPase, V1 complex, subunit F
Ec32 orthologEc-05_005880.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameATP6V1F
KEGG koko:K02151
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031410,GO:0031982,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042624,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Descriptionproton-transporting ATPase activity, rotational mechanism
COG categoryC
BiGG ReactioniMM904.YGR020C,iND750.YGR020C
BRITEko00000,ko00001,ko00002
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0051701
GO0004571
GO0006915
GO0006879
GO0070062
GO0006898
GO0042624
GO0033180
GO0005515
GO0055085
GO0000003
GO0002119
GO0006200
GO0016471
GO0046961
GO0090382
GO0033572
GO0040011
GO0005829
GO0008286
GO0015991
GO0009792
GO0018996
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft97_8aEsuBft97_8aEctocarpus subulatus male Bft15bgeneScaffold_523 389571..392868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_8a-0001EsuBft97_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 389655..392184 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_8a-0001-exonEsuBft97_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 389571..389696 +
EsuBft97_8a-0001-exonagat-exon-41826Ectocarpus subulatus male Bft15bexonScaffold_523 391279..391357 +
EsuBft97_8a-0001-exonagat-exon-41828Ectocarpus subulatus male Bft15bexonScaffold_523 391638..391803 +
EsuBft97_8a-0001-exonagat-exon-41827Ectocarpus subulatus male Bft15bexonScaffold_523 392118..392868 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_8a-0001-exonagat-five_prime_utr-15454Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 389571..389654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_8a-0001-cdsEsuBft97_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 389655..389696 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_8a-0001-exonagat-three_prime_utr-23735Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 392185..392868 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft97_8a-0001 ID=EsuBft97_8a-0001|Name=EsuBft97_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1122bp|location=Sequence derived from alignment at Scaffold_523:389571..392868+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTCAGCTGCACAAGCACACAGAGCCGAGAGATAGCGCAACAGTCCCAAA
GAACCCGATAGGAAGAGGCCTTCTCGTTAAGATTATGGACGAGAGTGGCA
AGCTGATCGCCATCATCGGGGACGAGGACACTGTGACCGGATTTTTGTTG
GCGGGAGTGGGGCACCGTACCGTCAACACAACAAATTTCCTCGTTGTCAA
GAACGACACGACGGTTTCGCAAATCGAAGACGCGTTCAACCGCCTCACGG
CGAGGGATGACATAGCGATCGTGCTCATCAACCAGCACGTTGCGAACGAC
ATCCGTCATCTCCTCGGGAGCTACTCCAAGACCATCCCCACAGTGCTAGA
GATTCCCAGCAAGGACGTTCCGTACGATCCCGAGCAGGACTACATCATGC
AGAGAATCAACATGATGCTCGGCGCCGGACAATCGTAGTGCGTGTAGTGC
GTGAGCAGTGCATCATAGTTGGAAGAGTGCGAAGCCATGCTTGGCCCTGT
GCATATTCGTGGCGCGTGAAGTCACCAGAGCCAAAATAGTGCCCCGCAAC
TGTGCCTATTTAGGATAGTGAATGGCCGCATGGAAAGTGCAGGCGCGACG
TGTATGTAACATTCCAAAATTGGGGAGACGGGGGGTAGTGCTATGCAGCA
CGGCGCCTCGTTAGTTCTCGCGCGCTCACACGAGCATGTTGTAATTTATG
GTTTTGTTTTTTGTGCCGTCTTGCTTGAGGAGCGGGGCCGAGAGTTTGAA
CAGCACGGCGTGCTTTTTTTGTTCTTCTGGCGGTCCTGCCCAGGAAATCA
CCGACGGAAGCAATACTATCGTCATGCTCTGACTCTCCCTCTCTCTCTTT
CTCTTGAATATATCCCCCTTCTCTTTCTCGGGGTTGTGTTAATACCGTTA
TTAGGTCAGAGGTACAATTATCGCCATGCTGTTTCTCTCTCTGTCCCTCT
CGTGAATATATCCCCATTCTCTTTCTCGGGGTTGTCTTGATACCGTTGTT
AGGTCAGAGGTGCAATTCTCGGTGTGTTGTCCGGTCCTACCCGCGCGGAT
GCCATGAAATGGTTGAATTCAAGTCACTGTTTCGTTGACGTCGTTCCAGC
ACTGCCCGACAATCGCCTTGGA
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protein sequence of EsuBft97_8a-0001

>EsuBft97_8 ID=EsuBft97_8|Name=EsuBft97_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=117bp
MDESGKLIAIIGDEDTVTGFLLAGVGHRTVNTTNFLVVKNDTTVSQIEDA
FNRLTARDDIAIVLINQHVANDIRHLLGSYSKTIPTVLEIPSKDVPYDPE
QDYIMQRINMMLGAGQS
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mRNA from alignment at Scaffold_523:389571..392868+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft97_8a-0001 ID=EsuBft97_8a-0001|Name=EsuBft97_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3298bp|location=Sequence derived from alignment at Scaffold_523:389571..392868+ (Ectocarpus subulatus male Bft15b)
GCTCAGCTGCACAAGCACACAGAGCCGAGAGATAGCGCAACAGTCCCAAA
GAACCCGATAGGAAGAGGCCTTCTCGTTAAGATTATGGACGAGAGTGGCA
AGCTGATCGCCATCATCGGGGACGAGGTAAGAGAGGAGCCAATGGGCAAG
CATTGGTCTACAGAAGTTAGTGTTCTCGGCGGGGTTCTTGCAGGTATGTA
CAGCCGAGTACAACACAGGTTGCTCGAAAGGCGGCTTGTGCTGCTGGTTG
GGTGCTATTGCTCGGTTGTGGATCGTTTCGCGAGACTCTTTGGTAGCCGT
GCTAGTCTTCTTTCATTGCAATTCGTGCTGAATCTCTGTGCACTTCTCTA
CCTCCACCTTAGAACCGGATGTGTTTTACTCCGCATGTGTACGAAGCAGC
ACAGCAGCAGGAGGGGGTTTGCGTGCTGCTTCTGCTACGTAGCAGCATCC
CTCTCGCTGCTGTTGGCTAATGCGTTTTGTGATCGCGAGGGTCAATGGCT
TGTGCCCGTGCCAACAGTTCAGCCAAAGCTCATGGTCACTAATCGCGCCT
AACGCCATCTTGTGTATTGGACGTAGGTAGAGCCGAGCACAACACACACA
GCAGGCAGAGGTTGATGAAGGTGTTTTTCCCACGAAGACATTGACCCTGC
TGCCCCGCGCAGAGGGTGTTATTACGCACGCTACATAGCTGACACACGCG
CTGAAGTATTGCCTGGGTCTCTTCAGCATGTGACTGCGCAACGAACGCTA
TGTCGTTGCAAATTCCCCTTCCTCAGCACTCAGCACAGATCAAGCAGGCA
ACGGCAAAACGGGGATACTGCTGTACATTTTTGTTTTTTTTCGTCTCCCA
TCATCGTGAAGACAACAACAACATCATTGGACTCTGTCGTCTGCCCCTCT
GGCCCCTATCCTCCACTTCTATCAGCTAGACGACCCAACCGGGGTCACAT
AGGAGGGGGGGGTCGGACCCCATCCTGCGGTTCACATTGTATTTATCCTT
ATGTCAACGAGCAGCAATCATTTGTGTATCATCTCTAGTGCGTTGGCCAG
TCATTCCGTTACTCGCTGGAGGATCACGCCGCTACACTCAAACATCACCG
GTCGCCCCGGTTGTCTAGTGGGTAGCTTTGTAGCCTGCTAAGGGCCAGGT
CATGGGTTCGAGTCCCGACAGAGTGAGTTTTTTTCTCGCTTGTTAAATCC
TGGTCTCTGTTGGAAGCGACGCGCTGCAAAGCTCGTTGTTATTAGTAAAT
TTGATCGACTTCATAAGTCGCAAGGGAAGGGATTGCTGTACCCTTGTCGC
GATAAAAATATCTCAGGCAGGAACCGCACGTGTAACCCCCCCCTCCTGTG
TAACCCCGGTTGGGTCGTCTAGCTGGTAGAAGTGGAGGATACGGACCAGA
GGGGCAGACGACAGAATCCAATGATGGGAGAAAAAAAAAACAACAACAAA
TAAATATTCTTCTCAACACCTTGCCACCATCAGCCGGGATGTGAAACCCA
CACGTGGCCCTTTTCAAGCCCTCGATGTATGCGCCGCGAACGCCGTGGTC
TTTGGGCGCGCCTCACGACAGGAAAGCTGGAAACATCGTTCCGAAAGGCG
GCGTGCTTATAACGTGATCGTGTGCTGTCATACAATGCATACGGCGGTTG
ATCATCCGCCCCCATGCGTGTGCGGTGTGCTCCTTGCTTGACCTCTGGAC
GTTGACAGGACACTGTGACCGGATTTTTGTTGGCGGGAGTGGGGCACCGT
ACCGTCAACACAACAAATTTCCTCGTTGTCAAGAACGGTGAGAAGTTGCG
TTGTTGGCGCTACAGATAAATTTTGGGTCCCGAAGCACCTGGGGGAAAAC
AAGCAGGTTTTGCAGTTGTGTTCATCCTTCAAACGTTGATGGCCCGCTCC
TTCGCTCCCCGTCGTTGCCTTTTCGTGCACGGACCGCAGCACTTAGCGGG
TTCATTGACTCAAGGCCCGCTTGCTGTGCTTGACCAACGTTGAGGCCGCA
TGATTTTTGTTTTGTCAAATCGTCTCATGTGTGCGGCCGGCCGGCCCCCT
GTGCCTCCAACGCGCAGACACGACGGTTTCGCAAATCGAAGACGCGTTCA
ACCGCCTCACGGCGAGGGATGACATAGCGATCGTGCTCATCAACCAGCAC
GTTGCGAACGACATCCGTCATCTCCTCGGGAGCTACTCCAAGACCATCCC
CACAGTGCTAGAGATTCCCAGCAAGGACGTTCCGTGAGTGCTGGCATGCG
ATGTTTTAGTGCTTCCATGTTTTTATGTTGGTAACGACGTGTCGCTCGTT
TTCATGATCCCACGATGTACTTCCATGTGTTTTGTCTAGATTTCGGCAGT
CAAAGCAGGGCGTGGTATCATTGGTGTTTGCGGTAGAACCTTTGGAGAAG
ACTGCCGTTAGACGAGACCGTGCATTTGGCTCTTTGGGAGCAACCCCCCT
TTCCGCCGCCCGTTGCTTTCGCTCGACCTCCCTCCTGTTGCTGCTCTCAC
GTTCTCTGGCTGTTTTCCGTCGATCGGAACTTGTGTACGCTGCACAGGTA
CGATCCCGAGCAGGACTACATCATGCAGAGAATCAACATGATGCTCGGCG
CCGGACAATCGTAGTGCGTGTAGTGCGTGAGCAGTGCATCATAGTTGGAA
GAGTGCGAAGCCATGCTTGGCCCTGTGCATATTCGTGGCGCGTGAAGTCA
CCAGAGCCAAAATAGTGCCCCGCAACTGTGCCTATTTAGGATAGTGAATG
GCCGCATGGAAAGTGCAGGCGCGACGTGTATGTAACATTCCAAAATTGGG
GAGACGGGGGGTAGTGCTATGCAGCACGGCGCCTCGTTAGTTCTCGCGCG
CTCACACGAGCATGTTGTAATTTATGGTTTTGTTTTTTGTGCCGTCTTGC
TTGAGGAGCGGGGCCGAGAGTTTGAACAGCACGGCGTGCTTTTTTTGTTC
TTCTGGCGGTCCTGCCCAGGAAATCACCGACGGAAGCAATACTATCGTCA
TGCTCTGACTCTCCCTCTCTCTCTTTCTCTTGAATATATCCCCCTTCTCT
TTCTCGGGGTTGTGTTAATACCGTTATTAGGTCAGAGGTACAATTATCGC
CATGCTGTTTCTCTCTCTGTCCCTCTCGTGAATATATCCCCATTCTCTTT
CTCGGGGTTGTCTTGATACCGTTGTTAGGTCAGAGGTGCAATTCTCGGTG
TGTTGTCCGGTCCTACCCGCGCGGATGCCATGAAATGGTTGAATTCAAGT
CACTGTTTCGTTGACGTCGTTCCAGCACTGCCCGACAATCGCCTTGGA
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Coding sequence (CDS) from alignment at Scaffold_523:389571..392868+

>EsuBft97_8a-0001 ID=EsuBft97_8a-0001|Name=EsuBft97_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=354bp|location=Sequence derived from alignment at Scaffold_523:389571..392868+ (Ectocarpus subulatus male Bft15b)
ATGGACGAGAGTGGCAAGCTGATCGCCATCATCGGGGACGAGGACACTGT
GACCGGATTTTTGTTGGCGGGAGTGGGGCACCGTACCGTCAACACAACAA
ATTTCCTCGTTGTCAAGAACGACACGACGGTTTCGCAAATCGAAGACGCG
TTCAACCGCCTCACGGCGAGGGATGACATAGCGATCGTGCTCATCAACCA
GCACGTTGCGAACGACATCCGTCATCTCCTCGGGAGCTACTCCAAGACCA
TCCCCACAGTGCTAGAGATTCCCAGCAAGGACGTTCCGTACGATCCCGAG
CAGGACTACATCATGCAGAGAATCAACATGATGCTCGGCGCCGGACAATC
GTAG
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