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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FKE3 |
ProteomeId | EsuBft97_7 |
Protein domains | IPR001440 |
Protein domains | SSF48452 |
Protein domains | Coil |
Protein domains | PF13414 |
Protein domains | IPR019734 |
Protein domains | PTHR22904 |
Protein domains | IPR013026 |
Protein domains | IPR011990 |
Owner | apollo_admin@sb-roscoff.fr |
Note | tetratricopeptide repeat protein 4 homolog os:dictyostelium discoideum gn:ttc4 pe:3 sv:1 [Automatic annotation] |
Nb exon | 8 |
Max annot lvl | 2759|Eukaryota |
Length | 1805 |
Hectar predicted targeting category | other localisation |
Evalue | 2.03e-267 |
EggNOG OGs | COG0457@1|root,KOG0551@2759|Eukaryota |
Ec32 ortholog description | Tetratricopeptide-like helical domain |
Ec32 ortholog | Ec-05_005900.1 |
Date last modified | 2016-06-13 |
Date creation | 2016-06-13 |
Preferred name | CNS1 |
KEGG ko | ko:K02993 |
KEGG Pathway | ko03010,map03010 |
KEGG Module | M00177 |
GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0030544,GO:0031072,GO:0032991,GO:0043021,GO:0043022,GO:0044424,GO:0044464,GO:0044877,GO:0051879 |
Description | heat shock protein binding |
COG category | J |
BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
Cross References
External references for this mRNA
Database | Accession |
GO | 0005737 |
GO | 0043231 |
GO | 0031072 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft97_7a-0001 ID=EsuBft97_7a-0001|Name=EsuBft97_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1805bp|location=Sequence derived from alignment at Scaffold_523:393002..398556- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TACGCCTTGCCCGTCGCTCGTCTACTCTACTACGAATTTCGATAGCTGCT GCACTGGAACACACTCATGGTTTCTATATCTGACACCGAGTCTGCCGAGG CTGCTGCCTCGTCGGCGCTGGAAAGAGAGATCGACAAGGTGGTGAAGGCT GGTAAGGGATGGAAGGAGGGTGAGCGCGAGGCTTACCTCAAGAGGGTCAG GGAGGAGGACCACCCCATGTTCGCCGAGAGCATCGACGAGATGGACCCTG GCGTGGTAAAAGCCTTCCAGGACCTGACGTACGAAGACGAGACGCCGCTG TCTCTGGGAGAACACTTCAAGCAGCTGGGCAACGACCGCTTCAAGAGGGG CAAGAAGAACGCCATGTATTTCCGGCACGCACAGCAGGCGTACACGGAAG GCTTGCGAAATGTTCGCCTCGGCGAGGAGACGCCCGAGCTCACCGCCATG GCAGTGGCGCTCTTGTCCAACCGAGCGATGGCCAACCTCGCCCTCAAGAA CTACGGCAGCTGCCGCAAGGACTGCGACGAAGCGCTGGCCTTGTCCCCGG GGCACTTGAAGTGCCTCTACCGCAAGGCCAAGGCGGAGCTGATGCTGAGA AGACACGGGGAAGCTCTGGCTGTCTGCGAGGAGGGACTGAAGATTGACTC GTCCAACACGGAGCTGCTCAAGATAAAAAAGGAGTGCGGAAGGGCTTTGA AAGCGGCGGAAGACGCTACCGCCGCGCTGAATAGGGAGAAGGAGGAGCGG CTGGAGAGGCTGGCGGCGGTGTGGGACGAGTGCGAGGCCGCCGGGGTCAA GCTGGGGCCTAGCGGGTTCGACGAGTCCAACCACGAGCAGCGAAACGCCT TTCTGCCCATGGCGGACGACGAGGGTGGCGTTATCTGGCCAGTGCTGCTG CTGTACCCCCAGTACGGCCAGTCTGACCTCATCCAGGCCTTCCGGGACGC GGACATGCTGGCGGAGCACCTCGCCGCGGCATTCCCAGAAGAGGGTCCCC CCGCGCCGTGGGACACTTCTTTCGAGTACAGGTGCAGCGAGCTGGTCATC TACCTCCCCCTCCGACCGGTGGAACCGTCGCCGTCGGTGTTCGACTGGGT GGCGGAGTTCGAGAAGATGGAGGCCGCCAAGGTGTCGGGGGAGGAAGAAA TGAACCGAAGATCGAAGGAAAGGGCGGCAGCGGCGGCGGCAGCCGCTGCA CGTCCGCAGCGATGGGCACGCGTCCACCCGGGGTGCACGCTGCTGCGAAT CCTGTCCTTCGAGGACCACGTCGTTGCCGGGGCTACCCCGACGCTGCTCC TGTTCCCGAAGGACGGGCAGTCCCACAAGGATTTCTTGCGAGACAGCGGC GGCCGGATAGTCACCCTTGACCCGTAGGAAGTACAAGTACATGATCTTGG TGTGTTGCTGACCTTTTCTCCTGTTCGTACTGGTCTTCGTCTTGCCCTAG ACGCCTGGTGTTCGCCTTACGCAGGGATTGGTAGTCTTGATTGTAGATTT GACTTGAAGGTTCCCGTGTAAGTTTGGTACAGGTCTAACAACAAGCTGTG CGGACTTTTTGAGGATATGATAAAATTATCGTCGTCTGGTGTCTGCTCCT GGGGATCAACGAGCGCGGTATTCCCGAATACCCAGCACCCCTTGAAGCCA ACTACCTGCTGCTTGATCATGTTGGCTCAAAGAATATTCGTTCCATAGGG TACACCTCGACTGCTGTACCATTAATTGTCGTTGCAGCACACATGCTACC TCCAAGGAGACACATGTCCTGTTCCAGCGAGGTAACGTCTTCGCGGCTGA AATAC back to topprotein sequence of EsuBft97_7a-0001 >EsuBft97_7 ID=EsuBft97_7|Name=EsuBft97_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=436bp
MVSISDTESAEAAASSALEREIDKVVKAGKGWKEGEREAYLKRVREEDHP MFAESIDEMDPGVVKAFQDLTYEDETPLSLGEHFKQLGNDRFKRGKKNAM YFRHAQQAYTEGLRNVRLGEETPELTAMAVALLSNRAMANLALKNYGSCR KDCDEALALSPGHLKCLYRKAKAELMLRRHGEALAVCEEGLKIDSSNTEL LKIKKECGRALKAAEDATAALNREKEERLERLAAVWDECEAAGVKLGPSG FDESNHEQRNAFLPMADDEGGVIWPVLLLYPQYGQSDLIQAFRDADMLAE HLAAAFPEEGPPAPWDTSFEYRCSELVIYLPLRPVEPSPSVFDWVAEFEK MEAAKVSGEEEMNRRSKERAAAAAAAAARPQRWARVHPGCTLLRILSFED HVVAGATPTLLLFPKDGQSHKDFLRDSGGRIVTLDP back to topmRNA from alignment at Scaffold_523:393002..398556- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft97_7a-0001 ID=EsuBft97_7a-0001|Name=EsuBft97_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5555bp|location=Sequence derived from alignment at Scaffold_523:393002..398556- (Ectocarpus subulatus male Bft15b) TACGCCTTGCCCGTCGCTCGTCTACTCTACTACGAATTTCGGTGAGACCA
GCCGTAGGTCTCGTGGTTTGTTTTTGCTGGTGTCCACTGCTCGCATCGCA
TATTGCTCTTCCCCCTCCTCAAATCGATTGGCAGCAACAACACAGCACCG
ATCCAGGAAGCACCTGCTGTCGCCGGACCGCGTGCTTCGCCGTTGCCCAC
AGATAGCTGCTGCACTGGAACACACTCATGGTTTCTATATCTGACACCGA
GTCTGCCGAGGCTGCTGCCTCGTCGGCGCTGGAAAGAGAGATCGACAAGG
TGGTGAAGGCTGGTAAGGGATGGAAGGAGGGTGAGCGCGAGGCTTACCTC
AAGAGGGTCAGGGAGGAGGACCACCCCATGTTCGCCGAGAGCATCGACGT
GAGTTGTACATAAGGGGACGATCCCCCTGGTGTCCGTGTTGCCTTGCTCT
TGCCCGTGTTGGATGAGAGCGTAGGCGTGAGTTGTATGGGGACGGCCCTC
TCATTGCCCGCGTTCTCTTGCCTGTGTTCGTCAATAACACAAGATGGGTT
GTGCGGGCCATCCCCCTCCCGGGCCCGCGTTGCTTGCTCTTGCCCATTTT
CGGCAGCATCGACGTGAGTTTTATGGGGGCGACCCGGTTGCTCTTGACCG
TGTCCGCCGAGAGCATCGAAGTGAGTTGTATGAGGACGATCCCCATCTTG
CCCATGTTGCCTTGCTCTGGGGTGGGCTGTACGCCGTAGGCTGCACGGGT
GAAGACACCGGGGGGGAAACATGATGGCCCCAAAATAGACCTCGGCGTTC
AATCAGTCCACCCTTGCACAACGCGAAATGGGGTCAGGGCAGCTGCACCC
AGCCGGATCAATGCCACATACTGAACGTCAAGGTGCAATACGGGAGCGCA
GTCCTCACTGGTGCGGCCCATCGTACTGCTTGGTTCAAGGGGCTCGCGAG
GAGGAAGAGGCTTCTCAGAGGGTCGCGGAAAACCGTGGCGGGACTCGTCA
CGCCTCGGTTGCACACAGCGATGAGACGCACTCGTTCTCCAGCTTCCCTT
CTCATGCAGCAGCCTAGTAGCCGGTCATCTTTTGCTGCCTGCTGCCATTG
CCCAAGTAGGCTCTCCGCCATCATGCCGAAAGCCCGCGTACAGCGGGTCT
ATCCCTCCTGAACAAGGAGTTACACACACACGCCCCTCTCACATCTCTGT
TGCACTTTGTGAATCAAAACCCCGAAACAATAATGCCGGCTAACAGGAGA
TGGACCCTGGCGTGGTAAAAGCCTTCCAGGACCTGACGTACGAAGACGAG
ACGCCGCTGTCTCTGGGAGAACACTTCAAGCAGCTGGGCAACGACCGCTT
CAAGAGGGGCAAGAAGAACGCCATGTATTTCCGGCACGCACAGCAGGTCG
GATTGCGGTTCATGGGTCTGTACATACGTGAACTGTGTTCGGGTGGTAGA
CTTGTCGGCTGCTGCCTTCCTCGCTGTTGTGTTGTATGGCTGGACGACCA
GGGTTCTCCACGACCCCCTCTTGACACAAGCCGTTCACTGTAGAGTACGC
TCCCATGACCCCTGAGTACACAGAAACCTAGGAAAATGGCAGTACCTTGA
GAAGCACAGGAATATCAACCCAACTCGTCTCGAATGATGCAGGGACTAAG
GCAAGCAATATCACGAAAAACCTCTCCCCCCCGCCCCCAATCACGAAAGG
CGTACACGGAAGGCTTGCGAAATGTTCGCCTCGGCGAGGAGACGCCCGAG
CTCACCGCCATGGCAGTGGCGCTCTTGTCCAACCGAGCGATGGCCAACCT
CGCCCTCAAGAACTACGGCAGCTGCCGCAAGGACTGCGACGAAGCGCTGG
CCTTGTCCCCGGGGCACTTGAAGTGCCTCTACCGCAAGGCCAAGGCGGAG
CTGATGCTGAGAAGACACGGGTGCGTCGAGTGTTGCTGATGTATGTATTT
TTCCCGCCTCGCCGAATGCATAGCCCTGTTGGTACACATGTTGTCCCTTG
TCTACTAGGCAATGCCTGCGCGTAGTAGCGCAGTCGTAATTTGTGTCATG
GATACAGCCGCCATCTCCACGTTCGGCCTGAACCCGCGTTGAGCTTCGTT
TGATGAGCCCCCTTCCAGCGAGACATGGCACGAGGTTATAATGAAACGAT
GGTCTCGAATGAAGCTCGAGGTCCACCCAAAACCAATCTGTATGCATGGG
GTGTCCAATATCTTGCAATGATCCGTCTCCCGGGGCATCGAGATCCAACC
GAAGAAATGAGTTGCTCTGCTTCTCTCAGCACAGCACATGGAAGTATCAG
CACGTGCCGGCAACACTACCGCCGCCGTTCTGACCGCGTGGTGTTGGTTA
CTCCTGTTGCCGTGTGAAAAATTAAATGTCAGGGAAGCTCTGGCTGTCTG
CGAGGAGGGACTGAAGATTGACTCGTCCAACACGGAGCTGCTCAAGATAA
AAAAGGAGGTAGGAATGAAAATGCATGTGTTGGGATGGCATAGACTACTG
TAGTCGTGGGGAAGTACTCTCCTTGAAAGTCTAACCTGCCCAGCTTGGTT
GTGGCCGGAAATGCTTTCTCTGTGGACGTGGGACTATTTCACCAAACGCA
GATACCAACAACAGTGACTAAGAGGCGCACAATGCGCTTGGTTCATCATG
ACAACCGAGATGTCCTTCATGAAGAAATCATTGTTCCCTCGCCCGGCGAC
ATTTCTTGCCGTCCCACGGACAGTGCGGAAGGGCTTTGAAAGCGGCGGAA
GACGCTACCGCCGCGCTGAATAGGGAGAAGGAGGAGCGGCTGGAGAGGCT
GGCGGCGGTGTGGGACGAGTGCGAGGCCGCCGGGGTCAAGCTGGGGCCTA
GCGGGTTCGACGAGTCCAACCACGAGCAGCGAAACGCCTTTCTGCCCATG
GCGGACGACGAGGTCCGTAGTGCATTGCGACGTGGGATCTTGTAGGTTTC
GACTGAGGGGGGGCGAGCGGGGGGTACTCGTGGCCGTGCAAGCGGTTGTT
TCACGGGGGGAGGTAGTCACGTTCGTGCAGGCACAGGGACAAGGTGAATG
AAGGACATTAGGGAATGTGTGAATATACAGGCGGGGGGTTCTTTGTGGAG
GGACAGCAGCATGGGGAAGGAGACAGTGTCCATGGAGGAATCTACCGTGA
TTTTCCATGAGCCTTTGCCCCGCCATGGAGCCGGCATGGCCTACAACTTT
CAGCCGTCGACGTGCCAACAACAGCCTGCTGAGGAGACGTTTTTTTGCCC
GGAGGAGAAGAGATGGTTTGGTGTTGGAGCCCTGATGCGCATTGGAATAT
CGGGAAAATTTTGCACGGCCTTGTACCGCGATTTGCATAGGGTGTTAAGA
GACTACCAGCCCGGCCCGCAGGACCCTGGCTCGGCTAGTGGTTCGGCCAA
TCGTGGGTGTTTTAGTGTGCGTGTCGTGTTTGTTGTTTCTTTTCGTGAAC
AAGGCGCACCCCGAGCGTTTGTGTAGGTTTTGCTCCACTGCACTACCCGC
GAACAAGTGATCGGTGCTGCTGCACCGTGTGTCTGCGACAGGGTGGCGTT
ATCTGGCCAGTGCTGCTGCTGTACCCCCAGTACGGCCAGTCTGACCTCAT
CCAGGCCTTCCGGGACGCGGACATGCTGGCGGAGCACCTCGCCGCGGCAT
TCCCAGAAGAGGGTCCCCCCGCGCCGTGGGACACTTCTTTCGAGTACAGG
TGATAATCGGGGATGACAAGCCAAGCTTTCGCCATCCGGCTTCGGTGTGT
GTTGGTTGAGCAGTTGTTTGGGTGACGTTTGAATGGTCGTTTGCTGGTGC
CCGCGGTGAGTCGGTGAAATTGAAGCTACTCGTGGTTGTGCGGAGTCTGG
AACCGCAGACATATCTGTTGTGCGGAGGTTTTGGGGGCCTCTCGACCATA
TACTGTTGCTCTCAGCAGTACCGCCGCTTTGGATTGACGGTGACGCCACG
GGGTTCGTCTTTCACTGGTTTTGGCAAATAGGTTGCACCGGTGTGGGGCA
TGTGTGAGGCCACATGATAGCTGGTACATATAGGTTGGAACACTTTGAGC
ACGTCAACAACATCAGCATCGCCACCAACACCAAGAGCCACAATGACCAG
TGAAATCGCCGATAAGGAGAACAACAAGTGGAAGGACGGCGATGACAATG
ACAACGTCAGCGATAGACTTGCCGGCAACACCCCAAGTCGCGGAAGCAAC
CAACCACCAAACATCACACAACACAACCACACCTGCGGCGATGATGTCAT
TACCGGGGACGCGATCATGCCGCCCGACCCCAACCCCGAAAATGCGCGCC
CCCGATCATAACATCGCCATATCAGGTGCAGCGAGCTGGTCATCTACCTC
CCCCTCCGACCGGTGGAACCGTCGCCGTCGGTGTTCGACTGGGTGGCGGA
GTTCGAGAAGATGGAGGCCGCCAAGGTGTCGGGGGAGGAAGAAATGAACC
GAAGGTGAGAGTGGCGAAATGCGGGCACAAGTCTCGCTTGGGCGAGAGTC
CGCTGGGGTGCTTGTGGTCGGTAGATCGTGCTGTCGCGAAGAATGAGTTT
GTCTGCTTTGTGTCGCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCCCCCCCAACTTCGTTTTCCTGGATGATGCC
GTTGAATTGAGCGCAAACGATGTTCATGCTTCTCATCAGAAGCACCCGAA
GAAAACCCACACCGTTTGCGTTTGCACTGGTTTCCTTTGAATGGCAGGAA
GCGGCGTTCGTCCGTGTGGAAAACGTAGTTAAGTAAAAAAAAACACTCAT
GTGATGTGGCAAAGCAACAACTGATAGCCCGTTTTCCTTCGCCCACTCCC
GTGCCACCAGATCGAAGGAAAGGGCGGCAGCGGCGGCGGCAGCCGCTGCA
CGTCCGCAGCGATGGGCACGCGTCCACCCGGGGTGCACGCTGCTGCGAAT
CCTGTCCTTCGAGGACCACGTCGTTGCCGGGGCTACCCCGACGCTGCTCC
TGTTCCCGAAGGACGGGCAGTCCCACAAGGATTTCTTGCGAGACAGCGGC
GGCCGGATAGTCACCCTTGACCCGTAGGAAGTACAAGTACATGATCTTGG
TGTGTTGCTGACCTTTTCTCCTGTTCGTACTGGTCTTCGTCTTGCCCTAG
ACGCCTGGTGTTCGCCTTACGCAGGGATTGGTAGTCTTGATTGTAGATTT
GACTTGAAGGTTCCCGTGTAAGTTTGGTACAGGTCTAACAACAAGCTGTG
CGGACTTTTTGAGGATATGATAAAATTATCGTCGTCTGGTGTCTGCTCCT
GGGGATCAACGAGCGCGGTATTCCCGAATACCCAGCACCCCTTGAAGCCA
ACTACCTGCTGCTTGATCATGTTGGCTCAAAGAATATTCGTTCCATAGGG
TACACCTCGACTGCTGTACCATTAATTGTCGTTGCAGCACACATGCTACC
TCCAAGGAGACACATGTCCTGTTCCAGCGAGGTAACGTCTTCGCGGCTGA
AATAC back to topCoding sequence (CDS) from alignment at Scaffold_523:393002..398556- >EsuBft97_7a-0001 ID=EsuBft97_7a-0001|Name=EsuBft97_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1311bp|location=Sequence derived from alignment at Scaffold_523:393002..398556- (Ectocarpus subulatus male Bft15b) ATGGTTTCTATATCTGACACCGAGTCTGCCGAGGCTGCTGCCTCGTCGGC GCTGGAAAGAGAGATCGACAAGGTGGTGAAGGCTGGTAAGGGATGGAAGG AGGGTGAGCGCGAGGCTTACCTCAAGAGGGTCAGGGAGGAGGACCACCCC ATGTTCGCCGAGAGCATCGACGAGATGGACCCTGGCGTGGTAAAAGCCTT CCAGGACCTGACGTACGAAGACGAGACGCCGCTGTCTCTGGGAGAACACT TCAAGCAGCTGGGCAACGACCGCTTCAAGAGGGGCAAGAAGAACGCCATG TATTTCCGGCACGCACAGCAGGCGTACACGGAAGGCTTGCGAAATGTTCG CCTCGGCGAGGAGACGCCCGAGCTCACCGCCATGGCAGTGGCGCTCTTGT CCAACCGAGCGATGGCCAACCTCGCCCTCAAGAACTACGGCAGCTGCCGC AAGGACTGCGACGAAGCGCTGGCCTTGTCCCCGGGGCACTTGAAGTGCCT CTACCGCAAGGCCAAGGCGGAGCTGATGCTGAGAAGACACGGGGAAGCTC TGGCTGTCTGCGAGGAGGGACTGAAGATTGACTCGTCCAACACGGAGCTG CTCAAGATAAAAAAGGAGTGCGGAAGGGCTTTGAAAGCGGCGGAAGACGC TACCGCCGCGCTGAATAGGGAGAAGGAGGAGCGGCTGGAGAGGCTGGCGG CGGTGTGGGACGAGTGCGAGGCCGCCGGGGTCAAGCTGGGGCCTAGCGGG TTCGACGAGTCCAACCACGAGCAGCGAAACGCCTTTCTGCCCATGGCGGA CGACGAGGGTGGCGTTATCTGGCCAGTGCTGCTGCTGTACCCCCAGTACG GCCAGTCTGACCTCATCCAGGCCTTCCGGGACGCGGACATGCTGGCGGAG CACCTCGCCGCGGCATTCCCAGAAGAGGGTCCCCCCGCGCCGTGGGACAC TTCTTTCGAGTACAGGTGCAGCGAGCTGGTCATCTACCTCCCCCTCCGAC CGGTGGAACCGTCGCCGTCGGTGTTCGACTGGGTGGCGGAGTTCGAGAAG ATGGAGGCCGCCAAGGTGTCGGGGGAGGAAGAAATGAACCGAAGATCGAA GGAAAGGGCGGCAGCGGCGGCGGCAGCCGCTGCACGTCCGCAGCGATGGG CACGCGTCCACCCGGGGTGCACGCTGCTGCGAATCCTGTCCTTCGAGGAC CACGTCGTTGCCGGGGCTACCCCGACGCTGCTCCTGTTCCCGAAGGACGG GCAGTCCCACAAGGATTTCTTGCGAGACAGCGGCGGCCGGATAGTCACCC TTGACCCGTAG back to top
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