EsuBft97_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft97_20a-0001
Unique Name	EsuBft97_20a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:228441..231945 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft97_20
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	289
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Zn(2)-C6 fungal-type DNA-binding domain
Ec32 ortholog	Ec-15_001500.3
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft97_20a	EsuBft97_20a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 228441..231945 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_20a-0001	EsuBft97_20	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 230528..231847 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_20a-0001-exon	agat-exon-41911	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 228441..229759 -
EsuBft97_20a-0001-exon	EsuBft97_20a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 230375..231945 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_20a-0001-exon	agat-three_prime_utr-23727	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 228441..229759 -
EsuBft97_20a-0001-exon	agat-three_prime_utr-23728	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 230375..230527 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_20a-0001-cds	EsuBft97_20a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 230528..231847 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_20a-0001-exon	agat-five_prime_utr-15449	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 231848..231945 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:228441..231945-
coding sequence from alignment at Scaffold_523:228441..231945-

spliced messenger RNA

>EsuBft97_20a-0001 ID=EsuBft97_20a-0001|Name=EsuBft97_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2890bp|location=Sequence derived from alignment at Scaffold_523:228441..231945- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCTCTCACCGCGGACGTAGTCGCCGCCGTTCCTTCCTCGGGACGGGCTT
GCGGGGGGGGGGCAGAGGAGCAGCGACGACTACAACCTCAGCCCTTCGAT
GAGCAACAACATCCTGGGCTACGGAGCCGGCGCCGGCAGCCTCGCTTCCC
CCGAAAGAAGCAGCCCCTACCGGCAAGGGTTGCCTCCGCCGCCGATGCCA
CCGCCGCCACCACTGCCCAACGAGCAGCGGCCGCACTTCCTCGGTCGAAG
CTACCTCTCCGCTTCGTCCCCGGCCCCCTCGCACGGTCCCAGCGTCGGCT
CCTTCGACAGCTCTAACGCCCTCGGGGCTATCCTAGACGCCCGCCATCGC
GGCAGCAGCAACGGCTTCGTCCGTGGCGGCGGGGGCGGCGGGCGGGTCGG
GATCGGGATAGCCCCCCACCACCACGGCAGCAACAGCAGCCGTCGCCGAC
CAGACCAGGACTTGTCCCCGCAGGGGGACAACACCGGAGACGCCGGTGCC
GGCGCCGCCTCCTCAGCGATGCACGCGCGGCAGCAGTACGGCAAGGCGTT
TTCCGATCACCAGGGGAAGCGCTTCTTGCCTCCCCCCTCCGGCAGCGGCG
GCGGCGGCGGCAGGTTAAGGTTATCATCCGAGGAGCTCTACGGAAACAGT
CTGGCCGCCGCCGCCGCGGCCGCTGCGAGATGGCGCGGCGGGGTCGACGC
CGATGACAACAACAACGCTACTGGCGGCGGCGGCGGCAGCGCTGATAGGT
CGAACCCGGGGGTGAGCAGATGGAGGACCGGTGGCGGAGACCGTGGCTGG
ACGGCGGGGGAGGGGAGAGGGGGGGGACGACATCAAGCTCATCAGCGAGT
GCCGCAGAGGGGTGATGGCAGTGGTATTTGTATCGGTGGTGGTGGTGGTA
TGGACGTAGACTCGGCGCACGACCTTCTCGTGGGAGCTGCAGCGGCGGCG
ACCGCCAGCGGCGGGCAGAGCTTCCGCGACGCGCCCCCGGTCTCTATCGC
CGCCGATGGAGCCATGACCGGCGCTACGGGCAGTGCGGCGACGAACAGCT
GGGGTGATGGCGGCGATAACGGCCGCGCCGGCGGCGGTGCGGAGCGGAGC
GGACCCTCCCCTTGTTTTCTTGACGGGACCGGTGTGCCCGCGAGTGCCGC
GACTACCCGGTCCCCTGCAGGGGACGGCGAAATGGGGCAGCGGGGGCCAA
GTGGCCCCGGCGGCGGGGCCGGGGATAGGAGCGAGGGCAGGGAGGGTGGC
TTGCCGGGCGGGTGGGAGGTGCCTCTGCATCAGCAGCAGCAGCGGCAGCA
GCAGCAACAGCAGCAGCAGCGAGCCCCCGGGGGGCTTGATCAGGAGGGCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCGTGGCCC
ACCGATTACTCGATGTGATGCGCCGCCGCCGCCGCCGCGTGGTCCGCTGA
TTTCTCGACGTGATGCGTGTAGCCTTAGCCGCGCCTGGCTTGTTCCTCTC
CTGGAAAGATGATGAGGCGAGAGGCCCAGCGAGAGAGGACAAGGTCTCGT
CGCGGCCGGTTGATACGGGTGGCAGTGAGTTTTGAATGCGACATGAAAGG
TTGCGTAGAGGTTCGTTTTTTGTCCCGTTTACGAAAACGGGAGCATCGAT
TTACTTATGGTTGTCAAAATATCAATCAACAGAGTGAGCACGATGAGCTC
GCTGAGAGGGGGGGCGGGGTTGCTTTCGACCGCTGCTGCTGCAGCGGCCG
TGTGTACAAGCGTATTTTCTCGACATGCCTAGTCCGGAGCACATTCGAAC
CCGCTTCTTGTTTTTCCCCACCGGACAAGGCCGGCTCGTGGATGGCGGTG
ATTGGCAAGCGCGATGTTCGCTAGCGCCAACAATATGTAGTGCGTTTCCC
TCGTTTCGGTGTTGCTGTTTCCTTCAGGGTAGGGGGGGCGGGGGGGGGGG
GGGCGTACTCTTNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTTGTTGGTTG
CCCCTCGTTTGATTGATGACGTTTCCGTGTTTTGTCCTTGTCGTTGCTCT
CTTTCCATGCCAATGCGTGAGATCTGCCAGTCAGTGATGATACGTGTGTA
GAAGTAGCTTCGGTGCGATCTTGTGTGCAGCGCGCGATTAGAACCGCTGA
ACCGAAGCAAGTTTGTCGACAATTAGAGAGAGGTCTCCGCGCCTTGCTTC
TCCTTGCCCGAACGTGGGGTATCTGTTCTGCTTCCCACCCTCAAGTGGAA
AGTGTTGTGTTTATCCATTTTCTGCTGTGGCTTGACTTTCCTCGAATTTT
TTAGTAGTTTGTGGGTAGAGACGGCCAGAATATATAGGTCTAACTTTCGG
TTTTGTAAGATATTTTCTGCGTGCAGGTGTGTAGTAGCGGTGGCGGTAGT
TTTTTCGTGGCTTAAGTATATTTATTCGTTTTCTTTTGGTCTTGGTTGTT
GATGATGTCCATCGTCTGGTTTCTCTATTTTGTGCGTCCTTTTGGCCGAT
CCATCTTGCTGTCAACGTCTCATTCCTAGTGTGTGTGGCGTCCTGTAGGG
AGGGGGTTCGCCTTTCTATCAAAAGCTCCCGAGTGCTCTTTCAATCGCAG
CTCACTTGCTCAAAACTTGGTGTCGTACTGCTGTAGGTGTCGAGTTGTCG
TGGGCTGGTATCATAGCACCGCATGTGTCCGTGGCGGAACTATTCTGCTC
TTCCCTGTAGTCACCCATCGCTCCTGCTGCTGTCGCAGTCGGTTGTGTGT
TTTGTGTGCCTTGCATTGCGCACGCGCCTTGTACTCCCTAAAAAACTGGA
AGTTGTTACCTGGTATTTTGTCGTTTGCAGTTACGTTTGG

protein sequence of EsuBft97_20a-0001

>EsuBft97_20 ID=EsuBft97_20|Name=EsuBft97_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=439bp
MSNNILGYGAGAGSLASPERSSPYRQGLPPPPMPPPPPLPNEQRPHFLGR
SYLSASSPAPSHGPSVGSFDSSNALGAILDARHRGSSNGFVRGGGGGGRV
GIGIAPHHHGSNSSRRRPDQDLSPQGDNTGDAGAGAASSAMHARQQYGKA
FSDHQGKRFLPPPSGSGGGGGRLRLSSEELYGNSLAAAAAAAARWRGGVD
ADDNNNATGGGGGSADRSNPGVSRWRTGGGDRGWTAGEGRGGGRHQAHQR
VPQRGDGSGICIGGGGGMDVDSAHDLLVGAAAAATASGGQSFRDAPPVSI
AADGAMTGATGSAATNSWGDGGDNGRAGGGAERSGPSPCFLDGTGVPASA
ATTRSPAGDGEMGQRGPSGPGGGAGDRSEGREGGLPGGWEVPLHQQQQRQ
QQQQQQQRAPGGLDQEGAAAAAAAAAAATAAAWPTDYSM

mRNA from alignment at Scaffold_523:228441..231945-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft97_20a-0001 ID=EsuBft97_20a-0001|Name=EsuBft97_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3505bp|location=Sequence derived from alignment at Scaffold_523:228441..231945- (Ectocarpus subulatus male Bft15b)
GCCTCTCACCGCGGACGTAGTCGCCGCCGTTCCTTCCTCGGGACGGGCTT
GCGGGGGGGGGGCAGAGGAGCAGCGACGACTACAACCTCAGCCCTTCGAT
GAGCAACAACATCCTGGGCTACGGAGCCGGCGCCGGCAGCCTCGCTTCCC
CCGAAAGAAGCAGCCCCTACCGGCAAGGGTTGCCTCCGCCGCCGATGCCA
CCGCCGCCACCACTGCCCAACGAGCAGCGGCCGCACTTCCTCGGTCGAAG
CTACCTCTCCGCTTCGTCCCCGGCCCCCTCGCACGGTCCCAGCGTCGGCT
CCTTCGACAGCTCTAACGCCCTCGGGGCTATCCTAGACGCCCGCCATCGC
GGCAGCAGCAACGGCTTCGTCCGTGGCGGCGGGGGCGGCGGGCGGGTCGG
GATCGGGATAGCCCCCCACCACCACGGCAGCAACAGCAGCCGTCGCCGAC
CAGACCAGGACTTGTCCCCGCAGGGGGACAACACCGGAGACGCCGGTGCC
GGCGCCGCCTCCTCAGCGATGCACGCGCGGCAGCAGTACGGCAAGGCGTT
TTCCGATCACCAGGGGAAGCGCTTCTTGCCTCCCCCCTCCGGCAGCGGCG
GCGGCGGCGGCAGGTTAAGGTTATCATCCGAGGAGCTCTACGGAAACAGT
CTGGCCGCCGCCGCCGCGGCCGCTGCGAGATGGCGCGGCGGGGTCGACGC
CGATGACAACAACAACGCTACTGGCGGCGGCGGCGGCAGCGCTGATAGGT
CGAACCCGGGGGTGAGCAGATGGAGGACCGGTGGCGGAGACCGTGGCTGG
ACGGCGGGGGAGGGGAGAGGGGGGGGACGACATCAAGCTCATCAGCGAGT
GCCGCAGAGGGGTGATGGCAGTGGTATTTGTATCGGTGGTGGTGGTGGTA
TGGACGTAGACTCGGCGCACGACCTTCTCGTGGGAGCTGCAGCGGCGGCG
ACCGCCAGCGGCGGGCAGAGCTTCCGCGACGCGCCCCCGGTCTCTATCGC
CGCCGATGGAGCCATGACCGGCGCTACGGGCAGTGCGGCGACGAACAGCT
GGGGTGATGGCGGCGATAACGGCCGCGCCGGCGGCGGTGCGGAGCGGAGC
GGACCCTCCCCTTGTTTTCTTGACGGGACCGGTGTGCCCGCGAGTGCCGC
GACTACCCGGTCCCCTGCAGGGGACGGCGAAATGGGGCAGCGGGGGCCAA
GTGGCCCCGGCGGCGGGGCCGGGGATAGGAGCGAGGGCAGGGAGGGTGGC
TTGCCGGGCGGGTGGGAGGTGCCTCTGCATCAGCAGCAGCAGCGGCAGCA
GCAGCAACAGCAGCAGCAGCGAGCCCCCGGGGGGCTTGATCAGGAGGGCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCGTGGCCC
ACCGATTACTCGATGTGATGCGCCGCCGCCGCCGCCGCGTGGTCCGCTGA
TTTCTCGACGTGATGCGTGTAGCCTTAGCCGCGCCTGGCTTGTTCCTCTC
CTGGAAAGATGATGAGGCGAGAGGCCCAGCGAGAGAGGACAAGGTCTCGT
CGCGGCCGGTTGATACGGGTGGTAAGATCTTAGCTCTCCTTTTTTGTGCG
TTTCTTAAGTGAGCCAATCTTGTGCGGCGACCGCCGCCGCCCCCACCGCT
TCTCCTACTCTCTCTTCTCTTCCCTCCTCCTCCTCCTCCCCCTCCTTCTC
CTCCTCTTGCTGCTGCAGCGGGCATGCTGACTTGCTTTGATGGCGCACAA
GTGTTTTGCCTTATTCGCCGTGGCCTAGGCTCAGCTGTTTCGTGTCTTGT
CGCCGGTTTTTCGCTTTTGTCGGGCGCGTGCCTGAGAGATGATTGATGGC
CTACTTTCCTGCTAGAAGTACCCTTTTGTTACCTTGCGGAACTATCTGCG
CGTCCCCCGCGCCAACCGGCGTCATCGCCGCCATGGCCCTTTTTCCTTCA
CAGGTTTTTTAATGGCATGTAACATAGCGAGGCAAGCCACGCTTTTCTCC
CTGGCTGTTCTACCCCTCCCTGTCATTGTATTCCCACTTCTGAAAAGTTT
TATTGTTATGTTTTGTCTCCTCCCGTTCTCTGTTGTGCGCCGGGCGGGTC
GCACGCGCGTGTGTAAAGCAAGTGATTGCCGCTGTGTTTAGCCGTGGTCA
GAGATAGAGGGGGCGGGGAGAGGGGGGGGTGATCAGGCAGTGAGTTTTGA
ATGCGACATGAAAGGTTGCGTAGAGGTTCGTTTTTTGTCCCGTTTACGAA
AACGGGAGCATCGATTTACTTATGGTTGTCAAAATATCAATCAACAGAGT
GAGCACGATGAGCTCGCTGAGAGGGGGGGCGGGGTTGCTTTCGACCGCTG
CTGCTGCAGCGGCCGTGTGTACAAGCGTATTTTCTCGACATGCCTAGTCC
GGAGCACATTCGAACCCGCTTCTTGTTTTTCCCCACCGGACAAGGCCGGC
TCGTGGATGGCGGTGATTGGCAAGCGCGATGTTCGCTAGCGCCAACAATA
TGTAGTGCGTTTCCCTCGTTTCGGTGTTGCTGTTTCCTTCAGGGTAGGGG
GGGCGGGGGGGGGGGGGGCGTACTCTTNNNNNNNNNNNNNGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGCGTTGTTGGTTGCCCCTCGTTTGATTGATGACGTTTCCGTGTTTTGT
CCTTGTCGTTGCTCTCTTTCCATGCCAATGCGTGAGATCTGCCAGTCAGT
GATGATACGTGTGTAGAAGTAGCTTCGGTGCGATCTTGTGTGCAGCGCGC
GATTAGAACCGCTGAACCGAAGCAAGTTTGTCGACAATTAGAGAGAGGTC
TCCGCGCCTTGCTTCTCCTTGCCCGAACGTGGGGTATCTGTTCTGCTTCC
CACCCTCAAGTGGAAAGTGTTGTGTTTATCCATTTTCTGCTGTGGCTTGA
CTTTCCTCGAATTTTTTAGTAGTTTGTGGGTAGAGACGGCCAGAATATAT
AGGTCTAACTTTCGGTTTTGTAAGATATTTTCTGCGTGCAGGTGTGTAGT
AGCGGTGGCGGTAGTTTTTTCGTGGCTTAAGTATATTTATTCGTTTTCTT
TTGGTCTTGGTTGTTGATGATGTCCATCGTCTGGTTTCTCTATTTTGTGC
GTCCTTTTGGCCGATCCATCTTGCTGTCAACGTCTCATTCCTAGTGTGTG
TGGCGTCCTGTAGGGAGGGGGTTCGCCTTTCTATCAAAAGCTCCCGAGTG
CTCTTTCAATCGCAGCTCACTTGCTCAAAACTTGGTGTCGTACTGCTGTA
GGTGTCGAGTTGTCGTGGGCTGGTATCATAGCACCGCATGTGTCCGTGGC
GGAACTATTCTGCTCTTCCCTGTAGTCACCCATCGCTCCTGCTGCTGTCG
CAGTCGGTTGTGTGTTTTGTGTGCCTTGCATTGCGCACGCGCCTTGTACT
CCCTAAAAAACTGGAAGTTGTTACCTGGTATTTTGTCGTTTGCAGTTACG
TTTGG

Coding sequence (CDS) from alignment at Scaffold_523:228441..231945-

>EsuBft97_20a-0001 ID=EsuBft97_20a-0001|Name=EsuBft97_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1320bp|location=Sequence derived from alignment at Scaffold_523:228441..231945- (Ectocarpus subulatus male Bft15b)
ATGAGCAACAACATCCTGGGCTACGGAGCCGGCGCCGGCAGCCTCGCTTC
CCCCGAAAGAAGCAGCCCCTACCGGCAAGGGTTGCCTCCGCCGCCGATGC
CACCGCCGCCACCACTGCCCAACGAGCAGCGGCCGCACTTCCTCGGTCGA
AGCTACCTCTCCGCTTCGTCCCCGGCCCCCTCGCACGGTCCCAGCGTCGG
CTCCTTCGACAGCTCTAACGCCCTCGGGGCTATCCTAGACGCCCGCCATC
GCGGCAGCAGCAACGGCTTCGTCCGTGGCGGCGGGGGCGGCGGGCGGGTC
GGGATCGGGATAGCCCCCCACCACCACGGCAGCAACAGCAGCCGTCGCCG
ACCAGACCAGGACTTGTCCCCGCAGGGGGACAACACCGGAGACGCCGGTG
CCGGCGCCGCCTCCTCAGCGATGCACGCGCGGCAGCAGTACGGCAAGGCG
TTTTCCGATCACCAGGGGAAGCGCTTCTTGCCTCCCCCCTCCGGCAGCGG
CGGCGGCGGCGGCAGGTTAAGGTTATCATCCGAGGAGCTCTACGGAAACA
GTCTGGCCGCCGCCGCCGCGGCCGCTGCGAGATGGCGCGGCGGGGTCGAC
GCCGATGACAACAACAACGCTACTGGCGGCGGCGGCGGCAGCGCTGATAG
GTCGAACCCGGGGGTGAGCAGATGGAGGACCGGTGGCGGAGACCGTGGCT
GGACGGCGGGGGAGGGGAGAGGGGGGGGACGACATCAAGCTCATCAGCGA
GTGCCGCAGAGGGGTGATGGCAGTGGTATTTGTATCGGTGGTGGTGGTGG
TATGGACGTAGACTCGGCGCACGACCTTCTCGTGGGAGCTGCAGCGGCGG
CGACCGCCAGCGGCGGGCAGAGCTTCCGCGACGCGCCCCCGGTCTCTATC
GCCGCCGATGGAGCCATGACCGGCGCTACGGGCAGTGCGGCGACGAACAG
CTGGGGTGATGGCGGCGATAACGGCCGCGCCGGCGGCGGTGCGGAGCGGA
GCGGACCCTCCCCTTGTTTTCTTGACGGGACCGGTGTGCCCGCGAGTGCC
GCGACTACCCGGTCCCCTGCAGGGGACGGCGAAATGGGGCAGCGGGGGCC
AAGTGGCCCCGGCGGCGGGGCCGGGGATAGGAGCGAGGGCAGGGAGGGTG
GCTTGCCGGGCGGGTGGGAGGTGCCTCTGCATCAGCAGCAGCAGCGGCAG
CAGCAGCAACAGCAGCAGCAGCGAGCCCCCGGGGGGCTTGATCAGGAGGG
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCGTGGC
CCACCGATTACTCGATGTGA