EsuBft97_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft97_17a-0001
Unique Name	EsuBft97_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:255188..258929 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft97_17
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	374
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft97_17a	EsuBft97_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 255188..258929 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_17a-0001-exon	EsuBft97_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 255188..258929 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_17a-0001-exon	agat-three_prime_utr-23725	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 255188..258636 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_17a-0001-cds	EsuBft97_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 258637..258900 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_17a-0001-exon	agat-five_prime_utr-15445	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 258901..258929 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_17a-0001	EsuBft97_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 258637..258900 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:255188..258929-
coding sequence from alignment at Scaffold_523:255188..258929-

spliced messenger RNA

>EsuBft97_17a-0001 ID=EsuBft97_17a-0001|Name=EsuBft97_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3742bp|location=Sequence derived from alignment at Scaffold_523:255188..258929- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACACACCTCCTGCTGCTGTGGCGTTCACTATGAGCCGCAAGCGCACGTTG
CAGCAAGTAGCTCTTGCGTTGGCCTCTGCTTCGTACGTGGGGTACGTTGC
CCTCGACCGATTCGCGCTGCACGACGAGACAGCGCTCGAGAATGCCAAGC
GAAGGGGCCGGCTTCGCGGAGAAGCGAAGGTTCGCCGCGTGCAGATGGAG
GAAGACGCCGCTGCCGCCGCCGCCGCAGCAGCAGCAGAAGAAGCAGCAGC
AGCAGCAGGGAAAACTCCTACGGAGAAAAGGGCTGGGAGGTAGCCTCCGA
GCCGATAGCGCTCAGTCGGCAGTGGTTCGTCGCGGCGTCTACTGCTTCTT
TCACGCTGTGAGAGAGGTTGCTGGGTAACACTAAATTACCGCACTAAAAG
GAGCAGCAGGCTGATTGCTCGCCGCCGTCTTCAGCTGGTGGTGTGGTGTG
CTATCTGCTTAAGGCGCTACCTTTGACACGGTCGGTATAACAGTGATTGG
CCGGAGAAACGACGCGGTTTATGCGTCTCCTGTTCTTCGATACGCAGCCG
TGTGTAACCTCGGTTCGTGTGCTGGTACACATGGCCGAAACGGAGGTCTC
AGTATATAATTACCGAGACAGGAGTGGGGCGTCCAACGTAGGGCCGGGGC
CCGTAGTGGCACACTTGTCACCACACGGTGTTTAACTCTCGGCTGTGTTC
AGCGGTCTCCTTTCTGCGGCTACTGACTGCTTCCATCGTCCGCCACAGAT
CAAGGTACGGCGTGGTGTCCAGGGGTGGGGTATGGACTGAGGAGGGCTCG
TGCGCTGATAGGACGGCGCGCACGGCGCTAGGCCTGTTCGCAGTCCTGCC
TCCCGTTATCCGCGGCGCATCTTGCGCGTGGACATTGCAAGAGCATATTC
TCACAGATGTTTGGCGGTGACGGGACTGCGTGCTGCTGCCCGTCGCTGCG
AAGCTTTCGTCCGTACGACGTCGGCTGTCCATGGGAGGAAAAGATCTGAG
CACCATTGGATGGTGGTGCAGGCGCCCCAAACGAGAGACCTGTGCCGAAC
AGGGCTGCGAGACACATGCTCCACCGTGAGCGGTGGCTGCGGCAGCGTTA
CCGACGGTGCGGTAGCGCAAGAGATCGGTCAACGTTTCCCGATTTTGGCT
GAGAGGAAGGATACACGGGGATGAATATGATAGTGATGCTGACGAGTGTC
GCTAGAGCTGCTGCGGATTTCAAGACGAGTTGAGCAGGAAGCCGCGTGAA
CAGCACTGGGGGGCAGCCATCGGTGGTTGTGGTGGGGACGTTGGCTGCGT
GTCCGGCTGGCTAGGCTGCTGTGTGGCTTCGGGAAAGTTAATAATAGGTA
TGTGTGCACGTATGAGTTGGAGGAAGGGACTCCAGCTTTAGGGTTGTCAT
CATGCATGCTGGTGCTGTTTTGTAGGATTTGGTGGCGTGTGTTTTGACTC
GATGGCCATCTGTCGTTTTCGTTGTTGGTGGTCGTCTTCTTCCGCTTCTT
GCTGGGTGAGTGTAGTAGAGCTGTGCGGTCTATGTACAACAACACCCTTG
TGCGTGCATGCACCATGTCTTATGGGCTTTCTCCTCCTGTGGTCGTGCTA
AGGGCGCAGCCCCTCTTGTAGAAGCCGATACCAACACCAGCGGCGGCTGC
CGCTGCTACTGCAGCTTAGACAGCTACGACGTGTATCTTTTTTAGAAAGT
ATACATGTATTCTTCGTTCGTCAAAAGGGGTTTTGCCGAAAAGGTTGGAG
GATGAGGAGGGCTTCACCCAACCGCTACATGGGTAAAGCTGTAGATGGAC
TAGACCCCGCCACGGCTGCGTTGTGTTGTGTGTATATTTTTGCCGACAGC
CCAATTCAGGCGACTAGAACGTGGAAAGATGCGTTCGTGATCCTTCTATT
CTCGATTGGTGCTCGTTCTGGGAATTCACAGTTAGCCCTGCGCCTGACCC
TGTTTTTGAGCCCAAATTCTGTCACGCGGAGGGTCTTTCGAATAGACTTC
TTTCTTTTTTTTTTCCGTTGCCAAGCCAATAAAAGCCGACTAATTTTGAC
AGCGGCGTCCATTTCCAGGGCGAACAGGCTGAACATGTGCTGCGATGGCT
TGTATTTTTTGAATTTTTTTGAGCGGGCGTGGATGCGCGCGGACAACAAC
ACATACACGGACAACACACGGCGGTGGGGTTGATGCGTGTGCTCCCTCGA
GATCAAACTAGACCTGCGACCACCTCACTGCTGACCGGCGCCACAAATCA
TGGCCCCGAGTGGCAGGTTAGGAGCGTGATCGACGATGTTGTGCCGGGGT
CGGAGTCTGAGAGTGGTCTGTCCGACGAGCTGAGCGGGGAGGATGACGAT
GAGATGTGATAAAGAATCCGCGATGGATGAAGGCAGATGTATTTTGAATC
AACACGAAAAAAAAACGTCGTTTGAAACAACGCAACACCACCCAAAAGGC
ACTGCCCCCGCTCGCGACCTTTCCTCCCCTGCACGAGGTCGAAGAGGTAT
TGCGCAGCACGTGTATCAGCCAGAGCTACTGATGGCGCACTAACGATAGA
AAGAGCTGCAGTACCGCCGGCGGTACAGCCTTTGCGCCGTGACACAAATG
TAGGCGATGGCGAAAGAAACGCCGAAGTTGATGGATGATGGCAGGCATAA
TTATATATTCAACACGAAAAAAAAAGTTGATTTGACACAACACAACATCA
AAAAGGAACTGCCCACGCTTGCAACCTTTCCTCGCCTGCCTGAGGCCGAA
CAGGTACTGCGCAGCAAGTACGTAAGCCAGAGCTACTGATGGGGCAGCAA
CGACAGAAAGAGCTGTAGTAGCGCCGGCGGTACAGCCTTTGTGCCGTGGC
ACAAAAATCATTTCACCGAAAAAATGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCGCAGCAGCAAGAAAAACAAACGCACAAAAAAAACAAAAACTCTCG
CACATCATCCCAGGTGCTCCGGCCACCACCGCGCTCGCTTTGCCTCCGCC
CGCGCCCACGAACCTGAGACGACTGCCTACCACCCCGCCCCCTATCAGCT
TGTGCTACTACCTGGCGTAGCTCTCGCTGCCTGCTTGCTTCAACTTTTTC
TGCTGCTGCTGCTGCTTCTTTTTCTTCTGCTGCTACTCTCTCCGCCTTTC
TCTTTGCCGCGTTCGCCTTGTTCTTTTGTACGCGGGCGGCGTCAGCTTTC
GCCGTTGCGGCGTCGCGGCTCCGTGTCAACCCCTTGACGTCTGCCCTCCT
CACCAGCCCGTCGAACCTTGCTTGCGACGCCCTGGCCTCCATCGTCATAC
CATGTTTTTTGACACATATCTCGTTTTGTCTCGAGAACTTTTGCTTTCGT
TTTTTCCTCGAGTCCGACGATTTTTTCTTCCCAGTCGTACCCATGAGTAC
CCGATGAGTACCCGATCTGGGGATTCGTTTTGCGCGACGATGACGCAGTG
GATTCTAGCGTGGCTTTTTGCGTCACCTTGCTGAGAAGGAGAGCTACGCT
TTCATCGGTGGCGATTTGCGTTGAAGTTGCTCACGTTCGTGGCAGCAGGC
GAAAAGGGCCGAAAATCACTTGTTTTTAGAGTGTTCGATGGGTTAGAACC
CGCCGATTGAAAAACTGACCGATGAATCCATAGATATGTCCTGTTCACAG
GTGTGTACTGAACCGCAAGAGCCAGCTCGTTTGTGGCATCGAGTATTTCG
CGTTTTTCTCTCGCTCTTTAATATCAAGCCAAAACAAGATTT

protein sequence of EsuBft97_17a-0001

>EsuBft97_17 ID=EsuBft97_17|Name=EsuBft97_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MSRKRTLQQVALALASASYVGYVALDRFALHDETALENAKRRGRLRGEAK
VRRVQMEEDAAAAAAAAAAEEAAAAAGKTPTEKRAGR

mRNA from alignment at Scaffold_523:255188..258929-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft97_17a-0001 ID=EsuBft97_17a-0001|Name=EsuBft97_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3742bp|location=Sequence derived from alignment at Scaffold_523:255188..258929- (Ectocarpus subulatus male Bft15b)
ACACACCTCCTGCTGCTGTGGCGTTCACTATGAGCCGCAAGCGCACGTTG
CAGCAAGTAGCTCTTGCGTTGGCCTCTGCTTCGTACGTGGGGTACGTTGC
CCTCGACCGATTCGCGCTGCACGACGAGACAGCGCTCGAGAATGCCAAGC
GAAGGGGCCGGCTTCGCGGAGAAGCGAAGGTTCGCCGCGTGCAGATGGAG
GAAGACGCCGCTGCCGCCGCCGCCGCAGCAGCAGCAGAAGAAGCAGCAGC
AGCAGCAGGGAAAACTCCTACGGAGAAAAGGGCTGGGAGGTAGCCTCCGA
GCCGATAGCGCTCAGTCGGCAGTGGTTCGTCGCGGCGTCTACTGCTTCTT
TCACGCTGTGAGAGAGGTTGCTGGGTAACACTAAATTACCGCACTAAAAG
GAGCAGCAGGCTGATTGCTCGCCGCCGTCTTCAGCTGGTGGTGTGGTGTG
CTATCTGCTTAAGGCGCTACCTTTGACACGGTCGGTATAACAGTGATTGG
CCGGAGAAACGACGCGGTTTATGCGTCTCCTGTTCTTCGATACGCAGCCG
TGTGTAACCTCGGTTCGTGTGCTGGTACACATGGCCGAAACGGAGGTCTC
AGTATATAATTACCGAGACAGGAGTGGGGCGTCCAACGTAGGGCCGGGGC
CCGTAGTGGCACACTTGTCACCACACGGTGTTTAACTCTCGGCTGTGTTC
AGCGGTCTCCTTTCTGCGGCTACTGACTGCTTCCATCGTCCGCCACAGAT
CAAGGTACGGCGTGGTGTCCAGGGGTGGGGTATGGACTGAGGAGGGCTCG
TGCGCTGATAGGACGGCGCGCACGGCGCTAGGCCTGTTCGCAGTCCTGCC
TCCCGTTATCCGCGGCGCATCTTGCGCGTGGACATTGCAAGAGCATATTC
TCACAGATGTTTGGCGGTGACGGGACTGCGTGCTGCTGCCCGTCGCTGCG
AAGCTTTCGTCCGTACGACGTCGGCTGTCCATGGGAGGAAAAGATCTGAG
CACCATTGGATGGTGGTGCAGGCGCCCCAAACGAGAGACCTGTGCCGAAC
AGGGCTGCGAGACACATGCTCCACCGTGAGCGGTGGCTGCGGCAGCGTTA
CCGACGGTGCGGTAGCGCAAGAGATCGGTCAACGTTTCCCGATTTTGGCT
GAGAGGAAGGATACACGGGGATGAATATGATAGTGATGCTGACGAGTGTC
GCTAGAGCTGCTGCGGATTTCAAGACGAGTTGAGCAGGAAGCCGCGTGAA
CAGCACTGGGGGGCAGCCATCGGTGGTTGTGGTGGGGACGTTGGCTGCGT
GTCCGGCTGGCTAGGCTGCTGTGTGGCTTCGGGAAAGTTAATAATAGGTA
TGTGTGCACGTATGAGTTGGAGGAAGGGACTCCAGCTTTAGGGTTGTCAT
CATGCATGCTGGTGCTGTTTTGTAGGATTTGGTGGCGTGTGTTTTGACTC
GATGGCCATCTGTCGTTTTCGTTGTTGGTGGTCGTCTTCTTCCGCTTCTT
GCTGGGTGAGTGTAGTAGAGCTGTGCGGTCTATGTACAACAACACCCTTG
TGCGTGCATGCACCATGTCTTATGGGCTTTCTCCTCCTGTGGTCGTGCTA
AGGGCGCAGCCCCTCTTGTAGAAGCCGATACCAACACCAGCGGCGGCTGC
CGCTGCTACTGCAGCTTAGACAGCTACGACGTGTATCTTTTTTAGAAAGT
ATACATGTATTCTTCGTTCGTCAAAAGGGGTTTTGCCGAAAAGGTTGGAG
GATGAGGAGGGCTTCACCCAACCGCTACATGGGTAAAGCTGTAGATGGAC
TAGACCCCGCCACGGCTGCGTTGTGTTGTGTGTATATTTTTGCCGACAGC
CCAATTCAGGCGACTAGAACGTGGAAAGATGCGTTCGTGATCCTTCTATT
CTCGATTGGTGCTCGTTCTGGGAATTCACAGTTAGCCCTGCGCCTGACCC
TGTTTTTGAGCCCAAATTCTGTCACGCGGAGGGTCTTTCGAATAGACTTC
TTTCTTTTTTTTTTCCGTTGCCAAGCCAATAAAAGCCGACTAATTTTGAC
AGCGGCGTCCATTTCCAGGGCGAACAGGCTGAACATGTGCTGCGATGGCT
TGTATTTTTTGAATTTTTTTGAGCGGGCGTGGATGCGCGCGGACAACAAC
ACATACACGGACAACACACGGCGGTGGGGTTGATGCGTGTGCTCCCTCGA
GATCAAACTAGACCTGCGACCACCTCACTGCTGACCGGCGCCACAAATCA
TGGCCCCGAGTGGCAGGTTAGGAGCGTGATCGACGATGTTGTGCCGGGGT
CGGAGTCTGAGAGTGGTCTGTCCGACGAGCTGAGCGGGGAGGATGACGAT
GAGATGTGATAAAGAATCCGCGATGGATGAAGGCAGATGTATTTTGAATC
AACACGAAAAAAAAACGTCGTTTGAAACAACGCAACACCACCCAAAAGGC
ACTGCCCCCGCTCGCGACCTTTCCTCCCCTGCACGAGGTCGAAGAGGTAT
TGCGCAGCACGTGTATCAGCCAGAGCTACTGATGGCGCACTAACGATAGA
AAGAGCTGCAGTACCGCCGGCGGTACAGCCTTTGCGCCGTGACACAAATG
TAGGCGATGGCGAAAGAAACGCCGAAGTTGATGGATGATGGCAGGCATAA
TTATATATTCAACACGAAAAAAAAAGTTGATTTGACACAACACAACATCA
AAAAGGAACTGCCCACGCTTGCAACCTTTCCTCGCCTGCCTGAGGCCGAA
CAGGTACTGCGCAGCAAGTACGTAAGCCAGAGCTACTGATGGGGCAGCAA
CGACAGAAAGAGCTGTAGTAGCGCCGGCGGTACAGCCTTTGTGCCGTGGC
ACAAAAATCATTTCACCGAAAAAATGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCGCAGCAGCAAGAAAAACAAACGCACAAAAAAAACAAAAACTCTCG
CACATCATCCCAGGTGCTCCGGCCACCACCGCGCTCGCTTTGCCTCCGCC
CGCGCCCACGAACCTGAGACGACTGCCTACCACCCCGCCCCCTATCAGCT
TGTGCTACTACCTGGCGTAGCTCTCGCTGCCTGCTTGCTTCAACTTTTTC
TGCTGCTGCTGCTGCTTCTTTTTCTTCTGCTGCTACTCTCTCCGCCTTTC
TCTTTGCCGCGTTCGCCTTGTTCTTTTGTACGCGGGCGGCGTCAGCTTTC
GCCGTTGCGGCGTCGCGGCTCCGTGTCAACCCCTTGACGTCTGCCCTCCT
CACCAGCCCGTCGAACCTTGCTTGCGACGCCCTGGCCTCCATCGTCATAC
CATGTTTTTTGACACATATCTCGTTTTGTCTCGAGAACTTTTGCTTTCGT
TTTTTCCTCGAGTCCGACGATTTTTTCTTCCCAGTCGTACCCATGAGTAC
CCGATGAGTACCCGATCTGGGGATTCGTTTTGCGCGACGATGACGCAGTG
GATTCTAGCGTGGCTTTTTGCGTCACCTTGCTGAGAAGGAGAGCTACGCT
TTCATCGGTGGCGATTTGCGTTGAAGTTGCTCACGTTCGTGGCAGCAGGC
GAAAAGGGCCGAAAATCACTTGTTTTTAGAGTGTTCGATGGGTTAGAACC
CGCCGATTGAAAAACTGACCGATGAATCCATAGATATGTCCTGTTCACAG
GTGTGTACTGAACCGCAAGAGCCAGCTCGTTTGTGGCATCGAGTATTTCG
CGTTTTTCTCTCGCTCTTTAATATCAAGCCAAAACAAGATTT

Coding sequence (CDS) from alignment at Scaffold_523:255188..258929-

>EsuBft97_17a-0001 ID=EsuBft97_17a-0001|Name=EsuBft97_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_523:255188..258929- (Ectocarpus subulatus male Bft15b)
ATGAGCCGCAAGCGCACGTTGCAGCAAGTAGCTCTTGCGTTGGCCTCTGC
TTCGTACGTGGGGTACGTTGCCCTCGACCGATTCGCGCTGCACGACGAGA
CAGCGCTCGAGAATGCCAAGCGAAGGGGCCGGCTTCGCGGAGAAGCGAAG
GTTCGCCGCGTGCAGATGGAGGAAGACGCCGCTGCCGCCGCCGCCGCAGC
AGCAGCAGAAGAAGCAGCAGCAGCAGCAGGGAAAACTCCTACGGAGAAAA
GGGCTGGGAGGTAG