EsuBft97_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft97_15a-0001
Unique Name	EsuBft97_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:290510..292592 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft97_15
Protein domains	IPR016098
Protein domains	IPR013912
Protein domains	IPR017901
Protein domains	IPR006599
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	147
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Adenylate cyclase-associated CAP, C-terminal
Ec32 ortholog	Ec-15_001460.1
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0003779
GO	0007010
GO	0000902

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft97_15a	EsuBft97_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 290510..292592 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_15a-0001-exon	agat-exon-41871	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 290510..291007 +
EsuBft97_15a-0001-exon	EsuBft97_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 291612..292592 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_15a-0001-exon	agat-five_prime_utr-15444	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 290510..290738 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_15a-0001-cds	EsuBft97_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 290739..291007 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_15a-0001-exon	agat-three_prime_utr-23723	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 292096..292592 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_15a-0001	EsuBft97_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 290739..292095 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:290510..292592+
coding sequence from alignment at Scaffold_523:290510..292592+

spliced messenger RNA

>EsuBft97_15a-0001 ID=EsuBft97_15a-0001|Name=EsuBft97_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1479bp|location=Sequence derived from alignment at Scaffold_523:290510..292592+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTCGTGGTCCGACTCTCCTCCTTGCCCCTTCGACTCTGCCTCCCTTTCT
TTGTACCAGCGAAACAGCCCAAAGCCAGAGGTGGCCGCTACCTTGGCGTG
AGCGTGGCTGTGCTGCTCGGAAAGCGTGGCTGTGCTGCTCGGAAAGTAAT
CTACTACGGTAGTCTGCATCTACTGCTGTACAGTCGACAAGCCGAGAGGC
ATCGAAGGAGCACACGCGCAGCAGCAACCATGTCGTCCTCTGTCCTTGAA
GCAATCGCAGCGAGGAACGCAGCCCAAAGGCGCCGTGTGGTCGAGAAGAA
GCACGGGGAGACGATCGATGTGCCCGAGGGGTCGGGACTGCTCGTCACCG
GCTGCAGCGGCTGCACCATCAACGCGCCGGGCAGAAGCAGCAGCGTCACC
GTCGAGCGGTGCGACGCGGGGACGAGGGTTAACGTCGGCAGCGTCGTGGC
GTCCCTGGAGATCATCCACTGCACGGACGTCCAGGTCTCAGTAGCGCGGT
GTCGCACGATCACCGTCGACGTCTCCACCGACGTCACCCTGACCTGCAAG
TGCCAGCCGCCCTTCGGACAAGAGGCGGAGCAGCAGCAGCAGCGAGGAGA
AGAGGCGAAGGTCCACCCGAGCGAAGCGGCCGACGAGGCCTCGGCGATCC
GCCTCTTCACCAGCTGCAGCGAAGGGCTCACAGTGCGGTACGAGGGCCTC
CTGTCGCAACCACCACCAGGGGCGGTCGCCGCCGCCGACCCCGCCGTTGC
CGCCGATGCCACGGCCGTCACCTACCGCGTCCCGAAAGACTGGCGGCACG
AAAAGGGCGACGGCCCCCGCTCGGTGACGCGCGTGTCGGGAGCGGGGAGC
GGCGGCGGGGGCGGAGCGTGCTGCAAGACTCTCCGTTGCGACCAGTACGG
CATCCCCCTGGAAGAGGTCGAGGCGGCCGAGGCGGGTGTCGCGTGGACGT
GGGAGCATGGCCGGGGGGGGGTTCCGCGGTAGCAGTCGTACGTAGCTAAA
TCACCCGCCTCGTTGAGGGGGCACAATCCGATGCACACAGGCCAATCGTT
GAACCCTGGCTGGGAGTGGTGTTGCTGTTTTCCTGCTTGTGGTATGTCTT
TTCACATCCCTTCCCGGTTTTGGCAAGAATAGTGATGGATGACTGTTGTT
GATGGGTCTCGAGAGTGAAATCAAGAAGTGCAGATTGCAATGGGGGGAGA
GGAGGGACCAGAAACCGGCACGTGGAGACGGCGAAGACGTAGTCATAAGA
CGTTCCCGGAGGGCGGAGATCAACAAGAGGCATTGTCGTCGGCGCCGCCG
AATGGGCCGGTAGAGTATTCTGACGTGACGGTCGCAGAGATATACCAGAG
GCATTGTTGCTGATGCCGCCGAATGTACCGGTATAGAAGTCCGACGTGAT
GATCGCAGCAAGCAGATTATTTGTGAAAATCTTGTGGAGGGAGTCTCCTT
GCTTGAGAATTGGCAAAGACGACGGTCTT

protein sequence of EsuBft97_15a-0001

>EsuBft97_15 ID=EsuBft97_15|Name=EsuBft97_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MSSSVLEAIAARNAAQRRRVVEKKHGETIDVPEGSGLLVTGCSGCTINAP
GRSSSVTVERCDAGTRVNVGSVVASLEIIHCTDVQVSVARCRTITVDVST
DVTLTCKCQPPFGQEAEQQQQRGEEAKVHPSEAADEASAIRLFTSCSEGL
TVRYEGLLSQPPPGAVAAADPAVAADATAVTYRVPKDWRHEKGDGPRSVT
RVSGAGSGGGGGACCKTLRCDQYGIPLEEVEAAEAGVAWTWEHGRGGVPR

mRNA from alignment at Scaffold_523:290510..292592+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft97_15a-0001 ID=EsuBft97_15a-0001|Name=EsuBft97_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2083bp|location=Sequence derived from alignment at Scaffold_523:290510..292592+ (Ectocarpus subulatus male Bft15b)
CGTCGTGGTCCGACTCTCCTCCTTGCCCCTTCGACTCTGCCTCCCTTTCT
TTGTACCAGCGAAACAGCCCAAAGCCAGAGGTGGCCGCTACCTTGGCGTG
AGCGTGGCTGTGCTGCTCGGAAAGCGTGGCTGTGCTGCTCGGAAAGTAAT
CTACTACGGTAGTCTGCATCTACTGCTGTACAGTCGACAAGCCGAGAGGC
ATCGAAGGAGCACACGCGCAGCAGCAACCATGTCGTCCTCTGTCCTTGAA
GCAATCGCAGCGAGGAACGCAGCCCAAAGGCGCCGTGTGGTCGAGAAGAA
GCACGGGGAGACGATCGATGTGCCCGAGGGGTCGGGACTGCTCGTCACCG
GCTGCAGCGGCTGCACCATCAACGCGCCGGGCAGAAGCAGCAGCGTCACC
GTCGAGCGGTGCGACGCGGGGACGAGGGTTAACGTCGGCAGCGTCGTGGC
GTCCCTGGAGATCATCCACTGCACGGACGTCCAGGTCTCAGTAGCGCGGT
GAGGGAATAAAGAAAGAGAGACGTGATCTATTCAACAAGAATAGCCTCTC
TCTGCTGTACAGATACCGCACCCAGGGGAGGCTGGGGCCGAAAATGCCGT
GCAATCAACATCGTAGGTATGCAGTAGTAGGACCGCATGGCGTCCGTTGT
GCCATAATGTATCCCGTACGCCCCGTCGGAATGGGACCGTCAGATGAATT
TGAATTTCGCTACACTCGCCGTCAGCTGGTTGAAAATGGTGCGAAGACGA
CTCCCGAACGACAACATCGTCCGTCTCAAGCAAAGCCCCGTTTGGCTACA
TGTAGTTACTGCTGAAGCTGCTGAAGCAGTAGTTCCAATTATTTCCCAAA
CACGCATGAACACATACCTCCGTGTGTTTACCTGAGCTGCGTTTGTTTGC
CCTTGTGAGCGATCGTGTTCATATGTAGCAAACGCGTCCGCCGTCTGCAG
TCGAAAATGCTGATGCCAAATGTCTTCTTTCATCCCGGTGCTTTGCCACA
CGTCGCTGACCCTTTCGTTACCCCGCTTGTTTGTGCGGTTGCTGATGTCT
CTTCCGCTGGCATCGCCGCCGCCGCCGCCGCCGAATCCGCCGCCGAGGAA
AGGTGTCGCACGATCACCGTCGACGTCTCCACCGACGTCACCCTGACCTG
CAAGTGCCAGCCGCCCTTCGGACAAGAGGCGGAGCAGCAGCAGCAGCGAG
GAGAAGAGGCGAAGGTCCACCCGAGCGAAGCGGCCGACGAGGCCTCGGCG
ATCCGCCTCTTCACCAGCTGCAGCGAAGGGCTCACAGTGCGGTACGAGGG
CCTCCTGTCGCAACCACCACCAGGGGCGGTCGCCGCCGCCGACCCCGCCG
TTGCCGCCGATGCCACGGCCGTCACCTACCGCGTCCCGAAAGACTGGCGG
CACGAAAAGGGCGACGGCCCCCGCTCGGTGACGCGCGTGTCGGGAGCGGG
GAGCGGCGGCGGGGGCGGAGCGTGCTGCAAGACTCTCCGTTGCGACCAGT
ACGGCATCCCCCTGGAAGAGGTCGAGGCGGCCGAGGCGGGTGTCGCGTGG
ACGTGGGAGCATGGCCGGGGGGGGGTTCCGCGGTAGCAGTCGTACGTAGC
TAAATCACCCGCCTCGTTGAGGGGGCACAATCCGATGCACACAGGCCAAT
CGTTGAACCCTGGCTGGGAGTGGTGTTGCTGTTTTCCTGCTTGTGGTATG
TCTTTTCACATCCCTTCCCGGTTTTGGCAAGAATAGTGATGGATGACTGT
TGTTGATGGGTCTCGAGAGTGAAATCAAGAAGTGCAGATTGCAATGGGGG
GAGAGGAGGGACCAGAAACCGGCACGTGGAGACGGCGAAGACGTAGTCAT
AAGACGTTCCCGGAGGGCGGAGATCAACAAGAGGCATTGTCGTCGGCGCC
GCCGAATGGGCCGGTAGAGTATTCTGACGTGACGGTCGCAGAGATATACC
AGAGGCATTGTTGCTGATGCCGCCGAATGTACCGGTATAGAAGTCCGACG
TGATGATCGCAGCAAGCAGATTATTTGTGAAAATCTTGTGGAGGGAGTCT
CCTTGCTTGAGAATTGGCAAAGACGACGGTCTT

Coding sequence (CDS) from alignment at Scaffold_523:290510..292592+

>EsuBft97_15a-0001 ID=EsuBft97_15a-0001|Name=EsuBft97_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_523:290510..292592+ (Ectocarpus subulatus male Bft15b)
ATGTCGTCCTCTGTCCTTGAAGCAATCGCAGCGAGGAACGCAGCCCAAAG
GCGCCGTGTGGTCGAGAAGAAGCACGGGGAGACGATCGATGTGCCCGAGG
GGTCGGGACTGCTCGTCACCGGCTGCAGCGGCTGCACCATCAACGCGCCG
GGCAGAAGCAGCAGCGTCACCGTCGAGCGGTGCGACGCGGGGACGAGGGT
TAACGTCGGCAGCGTCGTGGCGTCCCTGGAGATCATCCACTGCACGGACG
TCCAGGTCTCAGTAGCGCGGTGTCGCACGATCACCGTCGACGTCTCCACC
GACGTCACCCTGACCTGCAAGTGCCAGCCGCCCTTCGGACAAGAGGCGGA
GCAGCAGCAGCAGCGAGGAGAAGAGGCGAAGGTCCACCCGAGCGAAGCGG
CCGACGAGGCCTCGGCGATCCGCCTCTTCACCAGCTGCAGCGAAGGGCTC
ACAGTGCGGTACGAGGGCCTCCTGTCGCAACCACCACCAGGGGCGGTCGC
CGCCGCCGACCCCGCCGTTGCCGCCGATGCCACGGCCGTCACCTACCGCG
TCCCGAAAGACTGGCGGCACGAAAAGGGCGACGGCCCCCGCTCGGTGACG
CGCGTGTCGGGAGCGGGGAGCGGCGGCGGGGGCGGAGCGTGCTGCAAGAC
TCTCCGTTGCGACCAGTACGGCATCCCCCTGGAAGAGGTCGAGGCGGCCG
AGGCGGGTGTCGCGTGGACGTGGGAGCATGGCCGGGGGGGGGTTCCGCGG
TAG