EsuBft97_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft97_13a-0001
Unique Name	EsuBft97_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:318602..319394 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft97_13
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	79
Hectar predicted targeting category	other localisation
Evalue	9.19e-49
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft97_13a	EsuBft97_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 318602..319394 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_13a-0001-exon	EsuBft97_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 318602..319394 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_13a-0001-exon	agat-three_prime_utr-23721	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 318602..318641 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_13a-0001-cds	EsuBft97_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 318642..319394 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_13a-0001	EsuBft97_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 318642..319394 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:318602..319394-
coding sequence from alignment at Scaffold_523:318602..319394-

spliced messenger RNA

>EsuBft97_13a-0001 ID=EsuBft97_13a-0001|Name=EsuBft97_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=793bp|location=Sequence derived from alignment at Scaffold_523:318602..319394- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAA
GTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTG
TAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAA
ACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGA
GAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAG
AAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACAT
GGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGA
CATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAG
ACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCAAAGACCGTGTTCAT
GTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGAC
TGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGA
ATAGAGAGGAAAGGACGGTAGCTGTAGTGGGGCATAGGAGGTGGGTTGAA
AAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTT
GAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGT
CCTGTGGGAGAACAATGCTCCGTCCTCTCGAAGACGCGTGGTCAATGGTC
TAACCGCCAAGACATGCAAAACATAAGAGTACGCCCCCCCCCC

protein sequence of EsuBft97_13a-0001

>EsuBft97_13 ID=EsuBft97_13|Name=EsuBft97_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLE
TEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLH
GPMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDEFKCDCGFECKDRVH
VVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVE
KAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGRTMLRPLEDAWSMV

mRNA from alignment at Scaffold_523:318602..319394-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft97_13a-0001 ID=EsuBft97_13a-0001|Name=EsuBft97_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=793bp|location=Sequence derived from alignment at Scaffold_523:318602..319394- (Ectocarpus subulatus male Bft15b)
ATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAA
GTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTG
TAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAA
ACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGA
GAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAG
AAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACAT
GGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGA
CATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAG
ACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCAAAGACCGTGTTCAT
GTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGAC
TGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGA
ATAGAGAGGAAAGGACGGTAGCTGTAGTGGGGCATAGGAGGTGGGTTGAA
AAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTT
GAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGT
CCTGTGGGAGAACAATGCTCCGTCCTCTCGAAGACGCGTGGTCAATGGTC
TAACCGCCAAGACATGCAAAACATAAGAGTACGCCCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_523:318602..319394-

>EsuBft97_13a-0001 ID=EsuBft97_13a-0001|Name=EsuBft97_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_523:318602..319394- (Ectocarpus subulatus male Bft15b)
ATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAA
GTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTG
TAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAA
ACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGA
GAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAG
AAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACAT
GGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGA
CATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAG
ACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCAAAGACCGTGTTCAT
GTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGAC
TGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGA
ATAGAGAGGAAAGGACGGTAGCTGTAGTGGGGCATAGGAGGTGGGTTGAA
AAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTT
GAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGT
CCTGTGGGAGAACAATGCTCCGTCCTCTCGAAGACGCGTGGTCAATGGTC
TAA