EsuBft979_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft979_9a-0001
Unique NameEsuBft979_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_565contigScaffold_565:520580..521913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft979_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length111
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft979_9aEsuBft979_9aEctocarpus subulatus male Bft15bgeneScaffold_565 520580..521913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft979_9a-0001EsuBft979_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_565 521077..521262 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft979_9a-0001-exonagat-exon-110081Ectocarpus subulatus male Bft15bexonScaffold_565 520580..520750 +
EsuBft979_9a-0001-exonEsuBft979_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_565 520971..521913 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft979_9a-0001-exonagat-five_prime_utr-15441Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 520580..520750 +
EsuBft979_9a-0001-exonagat-five_prime_utr-15442Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 520971..521076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft979_9a-0001-cdsEsuBft979_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_565 521077..521262 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft979_9a-0001-exonagat-three_prime_utr-23719Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_565 521263..521913 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft979_9a-0001 ID=EsuBft979_9a-0001|Name=EsuBft979_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1114bp|location=Sequence derived from alignment at Scaffold_565:520580..521913+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCGGCAGGTGCTTTTGCGGGAAGCCCGTCATGCGCGTATTCGACTGCC
TGGGGAGGGTGGACATTGTCATGCTTGCTACGGTGCTGGGGTCGACCGCT
TGAGTATTGCAGAATGGGGGAAAGCATGGTAGAGTATTGTTCACGTTGGG
ATTGTGCCTGAAGAGTTGGAGGTATCCGATTGATAGTTCGGCCGGGCAGG
CGTTTTGTAATTTGTCGCGTGGGACGTGGTGCTTTGGTGGACGTGCAAGG
TGCATATGCGAGGTATTGGAATGTATTATGTTTGTTGACGGGTTGACCAC
CGACCGCCAAACCCTTGCTAGTGCCACCACTTTCCGCTTAGCGTGTACTC
CACAGTCGGGTTCGTGTGTTTGCGGATTTCAACCCGTGTTTAAGGTGGGT
GATGCATACGGTGGTGATCCAATGACGTCTTTCAGGGCACACGCCCGTTG
TGTACAATTGTAGATTCAGTTTGAGATGGTCTGGTGTTGTTTCGCCTTGT
TGGGCCCGTGGTGTGCGTGTCGGTCCCCGACGCAGCGATGCATGGTGTAG
CGAGTGCTTCTTAGGAGCTGAAATTTTCGAGCATTCTTGTCCTCCTCTGC
CCGTGGCTCCTGTTTCGCGTGCATGCTGGATTGTACTGTGAAGCGGGCCT
AAACCAGGGGCTAGGCCACAACGCTTCTGGTGTGCGTATGTTCACATGAT
ATATTCTTCAGGGTTGTCGTTGGTGATACAGCGGGACATTTGCACTCGAA
AAGGTGTGAAACAAAGCGTTTGCACTCATCACGTGAAAAAAAATGACGTG
GTTAGCAAACACCGGCGTTGTTGTGATTGTCGGAAATGCGCCGTAAGGGT
ACCCAACTCAGGTTGGACATCCACAATAAGCCAAGATGTCTGCTTGCTCG
ACTCGTCCAAATAGTCGGTGGGCACGAAGACAACTGTTTTTCTGGGTAAC
GTCGACCGGAACACGTTGGAAACGGGCGCGTCCCCACCCGCGAGTGGGGG
ACACGGGGGGCATCGAAAAACTTCTCGGCATTCTTTCGGATTGAGATGGC
ACCCGAACGCGTGCCGCGTGATGAGTATGAGTGCCGGGCCCAATCCGTCT
TTTTACACACCGGT
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protein sequence of EsuBft979_9a-0001

>EsuBft979_9 ID=EsuBft979_9|Name=EsuBft979_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MFVDGLTTDRQTLASATTFRLACTPQSGSCVCGFQPVFKVGDAYGGDPMT
SFRAHARCVQL
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mRNA from alignment at Scaffold_565:520580..521913+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft979_9a-0001 ID=EsuBft979_9a-0001|Name=EsuBft979_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1334bp|location=Sequence derived from alignment at Scaffold_565:520580..521913+ (Ectocarpus subulatus male Bft15b)
GTGCGGCAGGTGCTTTTGCGGGAAGCCCGTCATGCGCGTATTCGACTGCC
TGGGGAGGGTGGACATTGTCATGCTTGCTACGGTGCTGGGGTCGACCGCT
TGAGTATTGCAGAATGGGGGAAAGCATGGTAGAGTATTGTTCACGTTGGG
ATTGTGCCTGAAGAGTTGGAGGTGGGCGAAAGTCTGAAAGGTATCCGATT
GATAGTTCGGCCTGGCAGGCGTTTAGTAGTTTGTCGCTTGGGACGCAGTG
CTTTGGTGGACGTGCAAGGTGCATATGCGAGGTATTGGAATGTATTATGT
TTGTTGACGGGTTGACCACCGACCGCCAAACCCTTGCTAGTGCCACCACT
TTCCGCTTAGCGTGTACTCCACAGTCGGGTTCGTGNGAAAGGTATCCGAT
TGATAGTTCGGCCGGGCAGGCGTTTTGTAATTTGTCGCGTGGGACGTGGT
GCTTTGGTGGACGTGCAAGGTGCATATGCGAGGTATTGGAATGTATTATG
TTTGTTGACGGGTTGACCACCGACCGCCAAACCCTTGCTAGTGCCACCAC
TTTCCGCTTAGCGTGTACTCCACAGTCGGGTTCGTGTGTTTGCGGATTTC
AACCCGTGTTTAAGGTGGGTGATGCATACGGTGGTGATCCAATGACGTCT
TTCAGGGCACACGCCCGTTGTGTACAATTGTAGATTCAGTTTGAGATGGT
CTGGTGTTGTTTCGCCTTGTTGGGCCCGTGGTGTGCGTGTCGGTCCCCGA
CGCAGCGATGCATGGTGTAGCGAGTGCTTCTTAGGAGCTGAAATTTTCGA
GCATTCTTGTCCTCCTCTGCCCGTGGCTCCTGTTTCGCGTGCATGCTGGA
TTGTACTGTGAAGCGGGCCTAAACCAGGGGCTAGGCCACAACGCTTCTGG
TGTGCGTATGTTCACATGATATATTCTTCAGGGTTGTCGTTGGTGATACA
GCGGGACATTTGCACTCGAAAAGGTGTGAAACAAAGCGTTTGCACTCATC
ACGTGAAAAAAAATGACGTGGTTAGCAAACACCGGCGTTGTTGTGATTGT
CGGAAATGCGCCGTAAGGGTACCCAACTCAGGTTGGACATCCACAATAAG
CCAAGATGTCTGCTTGCTCGACTCGTCCAAATAGTCGGTGGGCACGAAGA
CAACTGTTTTTCTGGGTAACGTCGACCGGAACACGTTGGAAACGGGCGCG
TCCCCACCCGCGAGTGGGGGACACGGGGGGCATCGAAAAACTTCTCGGCA
TTCTTTCGGATTGAGATGGCACCCGAACGCGTGCCGCGTGATGAGTATGA
GTGCCGGGCCCAATCCGTCTTTTTACACACCGGT
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Coding sequence (CDS) from alignment at Scaffold_565:520580..521913+

>EsuBft979_9a-0001 ID=EsuBft979_9a-0001|Name=EsuBft979_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_565:520580..521913+ (Ectocarpus subulatus male Bft15b)
ATGTTTGTTGACGGGTTGACCACCGACCGCCAAACCCTTGCTAGTGCCAC
CACTTTCCGCTTAGCGTGTACTCCACAGTCGGGTTCGTGTGTTTGCGGAT
TTCAACCCGTGTTTAAGGTGGGTGATGCATACGGTGGTGATCCAATGACG
TCTTTCAGGGCACACGCCCGTTGTGTACAATTGTAG
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