EsuBft978_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft978_2a-0001
Unique Name	EsuBft978_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_511	contig	Scaffold_511:214450..216088 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft978_2
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	146
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft978_2a	EsuBft978_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_511 214450..216088 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft978_2a-0001-exon	EsuBft978_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_511 214450..215115 -
EsuBft978_2a-0001-exon	agat-exon-33581	Ectocarpus subulatus male Bft15b	exon	Scaffold_511 215295..216088 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft978_2a-0001-exon	agat-three_prime_utr-23704	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_511 214450..215115 -
EsuBft978_2a-0001-exon	agat-three_prime_utr-23705	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_511 215295..215578 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft978_2a-0001-cds	EsuBft978_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_511 215579..216088 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft978_2a-0001	EsuBft978_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_511 215579..216088 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_511:214450..216088-
coding sequence from alignment at Scaffold_511:214450..216088-

spliced messenger RNA

>EsuBft978_2a-0001 ID=EsuBft978_2a-0001|Name=EsuBft978_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1460bp|location=Sequence derived from alignment at Scaffold_511:214450..216088- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCCCGCACCTCCGCGGACAAGCCAAGGGCGGCCCTGGTCTCCAC
GGCATGCCCATGCATGACCGCCAAATGCACTCCTTCCACGGAGGTCGCCG
CTTCCACAGCGAGGGTGTACACAGCAGAGGGGGTGAGGGAGAGCGTGGTC
CTCAAATGCACATGGGCCCAGGTCACCACGCCCACCCTCGTCGCCACCCG
GAACACCACGGCATGCACCAGCTGGAGAGGGACGGGGACACTGCCGGTAC
GGACATGGACCATAGCCCCGTTCCTCACGGACCAGGACGGCACCACCACC
GAAGCCCCGTCGGTCTACACCACCGACCGCACGGCCCGCCCCCCGGCCCG
CCCGGCATGCGTGGCGGAATGCGGTGCGAGGACTTCGGTGACGACTTTCA
CCTCCGGCCGCATCAGCAGCACCAGCAGCACCGGCAGCAGCACGGAAGGA
TGGCGGCGGGCCGTGCTCGCGGTCACCCCTGTCACGAGCGCCGCGCTCCC
TTGCAGATGATGCCGATGCAGGCCTACTGAAGAGGAGAACAAGGCACCGT
GATGTACGGCTGGTTGAACGGTATGTGTTGCTGCTGGCCAGAGAGCTACG
ACGAGGCAGCAGCATCTGACCTGGAGTAGAAAGCAGTTCTTCGGCGGGAG
AACGAGAGACGGTTGGGTTTGGCCTGATTTTGGCGTGCTTTGAATTTGTT
TGTTTATTTGCAATTGGGCAGAAGCCTCCCTCGGGAAAACTGATACGAGG
GACAAAGGGCGTGCACCTTATGGTATACACCTGTGCGTGGTACGGTAGCA
GACGTAAACAGTCTCTGCTGGCAATCATACGCTGAATTCCTTTTGGTTTG
AGCGTCTCTTGATCAGTAATGCACCGAGGAGGAGCGGGGTACCCGCCCCC
GCGGCGAAATACTGCGGTGTTTGTGTGTTGCAGTCCCATACCTACGGAGA
GAGGTTGTAACGGGGTGAGTCGCGTGGCCAAGAGTGACGAAACGGATGTT
TTCTTCTGTTTTTTTGTGTAAGCGGTATTGCTGGTGTCTGGAGATGTATT
GAGTGACGATAGACACCCTGCAACCAGTCATTCGTCGTTTCCTGTTGACG
TTCCGCCTTTTGTTCGAAGCGCGTGTGTTTTGTATGTCGCCGAAGCTGCT
TCTCAATGGAAGCACAGAAGCGTTGGTAACACTTGTGTTAGCGTTAAGGC
GTACGTGCGTGTCGTTGTCTTCAGTCCTGCCTGCGTTGTGAAGCTGCAGC
TGACAGCCCCGAGTCTGTGTCTTTGTGGTACCGTGTGTTGTAAGGAGGAT
AATTTGTCTGGCACGTGTTGAGCGGACAAGTGTTGCAGGCTGCAGATAGG
CATGCAGTGCACGTGTTGTGGAGTGCTGCTGATGGCGATGCATCGACAAG
AACAAAGAAACAACTGGCTTCGACATCGGAGCCCACGAAAAACAAAAAAA
ACACACCCGG

protein sequence of EsuBft978_2a-0001

>EsuBft978_2 ID=EsuBft978_2|Name=EsuBft978_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MPPRTSADKPRAALVSTACPCMTAKCTPSTEVAASTARVYTAEGVRESVV
LKCTWAQVTTPTLVATRNTTACTSWRGTGTLPVRTWTIAPFLTDQDGTTT
EAPSVYTTDRTARPPARPACVAECGARTSVTTFTSGRISSTSSTGSSTEG
WRRAVLAVTPVTSAALPCR

mRNA from alignment at Scaffold_511:214450..216088-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft978_2a-0001 ID=EsuBft978_2a-0001|Name=EsuBft978_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1639bp|location=Sequence derived from alignment at Scaffold_511:214450..216088- (Ectocarpus subulatus male Bft15b)
ATGCCCCCCCGCACCTCCGCGGACAAGCCAAGGGCGGCCCTGGTCTCCAC
GGCATGCCCATGCATGACCGCCAAATGCACTCCTTCCACGGAGGTCGCCG
CTTCCACAGCGAGGGTGTACACAGCAGAGGGGGTGAGGGAGAGCGTGGTC
CTCAAATGCACATGGGCCCAGGTCACCACGCCCACCCTCGTCGCCACCCG
GAACACCACGGCATGCACCAGCTGGAGAGGGACGGGGACACTGCCGGTAC
GGACATGGACCATAGCCCCGTTCCTCACGGACCAGGACGGCACCACCACC
GAAGCCCCGTCGGTCTACACCACCGACCGCACGGCCCGCCCCCCGGCCCG
CCCGGCATGCGTGGCGGAATGCGGTGCGAGGACTTCGGTGACGACTTTCA
CCTCCGGCCGCATCAGCAGCACCAGCAGCACCGGCAGCAGCACGGAAGGA
TGGCGGCGGGCCGTGCTCGCGGTCACCCCTGTCACGAGCGCCGCGCTCCC
TTGCAGATGATGCCGATGCAGGCCTACTGAAGAGGAGAACAAGGCACCGT
GATGTACGGCTGGTTGAACGGTATGTGTTGCTGCTGGCCAGAGAGCTACG
ACGAGGCAGCAGCATCTGACCTGGAGTAGAAAGCAGTTCTTCGGCGGGAG
AACGAGAGACGGTTGGGTTTGGCCTGATTTTGGCGTGCTTTGAATTTGTT
TGTTTATTTGCAATTGGGCAGAAGCCTCCCTCGGGAAAACTGATACGAGG
GACAAAGGGCGTGCACCTTATGGTATACACCTGTGCGTGGTACGGTACGT
TCTAGAAGGCCTCTGCGCTCATGCAGCCGTAGTGTATACGTTGTGTGTGT
TTGAAGAGTCTTGCATTGTGTTGGTACGCCACCAGATGTTAGTGGAGATT
TCTGCCTGCTGACGTACGGCTGTGCTCCGTGTTGTTTGCTGTACGATGGC
AACTAGTTGTGTTGTCGTCGCAGGTAGCAGACGTAAACAGTCTCTGCTGG
CAATCATACGCTGAATTCCTTTTGGTTTGAGCGTCTCTTGATCAGTAATG
CACCGAGGAGGAGCGGGGTACCCGCCCCCGCGGCGAAATACTGCGGTGTT
TGTGTGTTGCAGTCCCATACCTACGGAGAGAGGTTGTAACGGGGTGAGTC
GCGTGGCCAAGAGTGACGAAACGGATGTTTTCTTCTGTTTTTTTGTGTAA
GCGGTATTGCTGGTGTCTGGAGATGTATTGAGTGACGATAGACACCCTGC
AACCAGTCATTCGTCGTTTCCTGTTGACGTTCCGCCTTTTGTTCGAAGCG
CGTGTGTTTTGTATGTCGCCGAAGCTGCTTCTCAATGGAAGCACAGAAGC
GTTGGTAACACTTGTGTTAGCGTTAAGGCGTACGTGCGTGTCGTTGTCTT
CAGTCCTGCCTGCGTTGTGAAGCTGCAGCTGACAGCCCCGAGTCTGTGTC
TTTGTGGTACCGTGTGTTGTAAGGAGGATAATTTGTCTGGCACGTGTTGA
GCGGACAAGTGTTGCAGGCTGCAGATAGGCATGCAGTGCACGTGTTGTGG
AGTGCTGCTGATGGCGATGCATCGACAAGAACAAAGAAACAACTGGCTTC
GACATCGGAGCCCACGAAAAACAAAAAAAACACACCCGG

Coding sequence (CDS) from alignment at Scaffold_511:214450..216088-

>EsuBft978_2a-0001 ID=EsuBft978_2a-0001|Name=EsuBft978_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_511:214450..216088- (Ectocarpus subulatus male Bft15b)
ATGCCCCCCCGCACCTCCGCGGACAAGCCAAGGGCGGCCCTGGTCTCCAC
GGCATGCCCATGCATGACCGCCAAATGCACTCCTTCCACGGAGGTCGCCG
CTTCCACAGCGAGGGTGTACACAGCAGAGGGGGTGAGGGAGAGCGTGGTC
CTCAAATGCACATGGGCCCAGGTCACCACGCCCACCCTCGTCGCCACCCG
GAACACCACGGCATGCACCAGCTGGAGAGGGACGGGGACACTGCCGGTAC
GGACATGGACCATAGCCCCGTTCCTCACGGACCAGGACGGCACCACCACC
GAAGCCCCGTCGGTCTACACCACCGACCGCACGGCCCGCCCCCCGGCCCG
CCCGGCATGCGTGGCGGAATGCGGTGCGAGGACTTCGGTGACGACTTTCA
CCTCCGGCCGCATCAGCAGCACCAGCAGCACCGGCAGCAGCACGGAAGGA
TGGCGGCGGGCCGTGCTCGCGGTCACCCCTGTCACGAGCGCCGCGCTCCC
TTGCAGATGA