EsuBft977_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft977_2a-0001
Unique NameEsuBft977_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_363contigScaffold_363:329779..330153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft977_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length37
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft977_2aEsuBft977_2aEctocarpus subulatus male Bft15bgeneScaffold_363 329779..330153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft977_2a-0001-exonEsuBft977_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_363 329779..330153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft977_2a-0001-cdsEsuBft977_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_363 329779..330153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft977_2a-0001EsuBft977_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_363 329779..330153 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft977_2a-0001 ID=EsuBft977_2a-0001|Name=EsuBft977_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=375bp|location=Sequence derived from alignment at Scaffold_363:329779..330153- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGATCAGGGCGCGGCAGCGGACCGTATCTTACTGGTGACGACGC
CCCGGGACGTGGACGTGCGCACCGCCAGGCATCACCATTCTCTGTCTCCT
TTGCTGGAGCGAGAGATTTGGAGGACGAACCTCCCTCCCCGTCACCACTA
CCACCGGCGCCGTTCGGTACCCCCGTCTTTGCCCTTCTGATGGGCCCCAG
AGAGGTTCTGACGCCATTGTCGATGCTGCTGCTCGTTGCCGCGGATGTTG
GACTCCACCAACTTTTCGGTCAGCTTGGGTGGTCGTTTCCGTCTTGCGTC
GCTGGCATGGTGGGGCTGTTTGCAGGTGTGGAGTTTTGGGACGCGACAAG
GGGGGGCGTAGAGAGACGAAAATAG
back to top

protein sequence of EsuBft977_2a-0001

>EsuBft977_2 ID=EsuBft977_2|Name=EsuBft977_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MLGSGRGSGPYLTGDDAPGRGRAHRQASPFSVSFAGARDLEDEPPSPSPL
PPAPFGTPVFALLMGPREVLTPLSMLLLVAADVGLHQLFGQLGWSFPSCV
AGMVGLFAGVEFWDATRGGVERRK
back to top

mRNA from alignment at Scaffold_363:329779..330153-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft977_2a-0001 ID=EsuBft977_2a-0001|Name=EsuBft977_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=375bp|location=Sequence derived from alignment at Scaffold_363:329779..330153- (Ectocarpus subulatus male Bft15b)
ATGCTGGGATCAGGGCGCGGCAGCGGACCGTATCTTACTGGTGACGACGC
CCCGGGACGTGGACGTGCGCACCGCCAGGCATCACCATTCTCTGTCTCCT
TTGCTGGAGCGAGAGATTTGGAGGACGAACCTCCCTCCCCGTCACCACTA
CCACCGGCGCCGTTCGGTACCCCCGTCTTTGCCCTTCTGATGGGCCCCAG
AGAGGTTCTGACGCCATTGTCGATGCTGCTGCTCGTTGCCGCGGATGTTG
GACTCCACCAACTTTTCGGTCAGCTTGGGTGGTCGTTTCCGTCTTGCGTC
GCTGGCATGGTGGGGCTGTTTGCAGGTGTGGAGTTTTGGGACGCGACAAG
GGGGGGCGTAGAGAGACGAAAATAG
back to top

Coding sequence (CDS) from alignment at Scaffold_363:329779..330153-

>EsuBft977_2a-0001 ID=EsuBft977_2a-0001|Name=EsuBft977_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_363:329779..330153- (Ectocarpus subulatus male Bft15b)
ATGCTGGGATCAGGGCGCGGCAGCGGACCGTATCTTACTGGTGACGACGC
CCCGGGACGTGGACGTGCGCACCGCCAGGCATCACCATTCTCTGTCTCCT
TTGCTGGAGCGAGAGATTTGGAGGACGAACCTCCCTCCCCGTCACCACTA
CCACCGGCGCCGTTCGGTACCCCCGTCTTTGCCCTTCTGATGGGCCCCAG
AGAGGTTCTGACGCCATTGTCGATGCTGCTGCTCGTTGCCGCGGATGTTG
GACTCCACCAACTTTTCGGTCAGCTTGGGTGGTCGTTTCCGTCTTGCGTC
GCTGGCATGGTGGGGCTGTTTGCAGGTGTGGAGTTTTGGGACGCGACAAG
GGGGGGCGTAGAGAGACGAAAATAG
back to top