EsuBft976_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft976_3a-0001
Unique NameEsuBft976_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_78contigScaffold_78:78839..80209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft976_3
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length118
Evalue2.72e-74
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft976_3aEsuBft976_3aEctocarpus subulatus male Bft15bgeneScaffold_78 78839..80209 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_3a-0001-exonEsuBft976_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_78 78839..79590 -
EsuBft976_3a-0001-exonagat-exon-98443Ectocarpus subulatus male Bft15bexonScaffold_78 79672..79806 -
EsuBft976_3a-0001-exonagat-exon-98442Ectocarpus subulatus male Bft15bexonScaffold_78 79913..80209 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_3a-0001-exonagat-three_prime_utr-23694Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_78 78839..78915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_3a-0001-cdsEsuBft976_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_78 78916..79590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_3a-0001EsuBft976_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_78 78916..80209 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft976_3a-0001 ID=EsuBft976_3a-0001|Name=EsuBft976_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1184bp|location=Sequence derived from alignment at Scaffold_78:78839..80209- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGACGGCGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCC
ACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATC
TGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGCACAAGTAGGGGACACG
GAAACGTCGGTTTCAGGAATGCTTTTTGCGGATAATTTTGTCGGTATGTC
GGACGCCCCTGAGGGACTGCAACTGCAAGTTGACGCGGCGAAGAAGTTTA
CTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATGATC
GCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGG
CAAAGCGCGAGCAGGGAAGCTGCACCCAATACTCGCTAACCGGCACCTCG
ACACACGCATCAAATTGACGGTTTTGAAGAGCGCGAAAGCAGCGAAAATC
ATCCTAGGATGCTCCAAGCGCACAAGTAATGCAGCCGTCAGGGCAGAATT
GGGGATCCAATCAGTACGGTCGGGAGGAGACGCGAGGAAGCTGACATGGC
AGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAATGTTGAAGGA
AGGAATAGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGAACAA
AGCTTAAGGTCAAATTCAGGACCGGGGGCATAGGCCTTCGAGAGGGTCGA
CGAAGACATAGCACGGTAGACGACGAAGACGACGAGTTCAAAAGTGATTG
CGGTTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGT
ACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATAGG
ACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGC
TATACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTA
GGATAGGCAGACTAGGGAAGACTTTTTTGAGCCACCTTGGGCAAAATAGA
AAGGAACGATTGGCCATCGGTGATCGGTCCTGTTGGAACAATGCTCCGTC
CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft976_3a-0001

>EsuBft976_3 ID=EsuBft976_3|Name=EsuBft976_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=369bp
MLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAVRKGAQVGDT
ETSVSGMLFADNFVGMSDAPEGLQLQVDAAKKFTDKWRLSANVKKSAVMI
AKDCSWNAHMSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKSAKAAKI
ILGCSKRTSNAAVRAELGIQSVRSGGDARKLTWQYRMCGMGEERLPXXXX
XXXXXXXXXXXXGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGGIGLREGR
RRHSTVDDEDDEFKSDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDR
TYREMFEAWNREERTVAILGHRRWVEKAGRDIVRIGRLGKTFLSHLGQNR
KERLAIGDRSCWNNAPSSX
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mRNA from alignment at Scaffold_78:78839..80209-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft976_3a-0001 ID=EsuBft976_3a-0001|Name=EsuBft976_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1371bp|location=Sequence derived from alignment at Scaffold_78:78839..80209- (Ectocarpus subulatus male Bft15b)
ATGCTAGACGGCGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCC
ACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATC
TGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGCACAAGTAGGGGACACG
GAAACGTCGGTTTCAGGAATGCTTTTTGCGGATAATTTTGTCGGTATGTC
GGACGCCCCTGAGGGACTGCAACTGCAAGTTGACGCGGCGAAGAAGTTTA
CTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATGGTA
TGCAACGAGAACAAGGAGGAACCAGTAGAACATAATAGATAGATCGAAGT
GGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTA
TAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGA
AAAGGGCAAAGCGCGAGCAGGGAAGCTGCACCCAATACTCGCTAACCGGC
ACCTCGACACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCG
CCGCTAGAGTACGCCGGAGGGTATGGGAAGGAAATAAGAAGGTAGTCAAA
GAACTTCGAGGCGGCGCAGGCGAAAGCAGCGAAAATCATCCTAGGATGCT
CCAAGCGCACAAGTAATGCAGCCGTCAGGGCAGAATTGGGGATCCAATCA
GTACGGTCGGGAGGAGACGCGAGGAAGCTGACATGGCAGTATCGCATGTG
CGGGATGGGAGAGGAGAGGTTGCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGGAATGTTGAAGGAAGGAATAGGGTTC
AAGGATTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAA
ATTCAGGACCGGGGGCATAGGCCTTCGAGAGGGTCGACGAAGACATAGCA
CGGTAGACGACGAAGACGACGAGTTCAAAAGTGATTGCGGTTTCGAATGC
GAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAG
GGAAGTGTACGTGACTGAGCTGGGAAAAATAGATAGGACGTACAGGGAGA
TGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTATACTGGGGCAT
AGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGGCAGACT
AGGGAAGACTTTTTTGAGCCACCTTGGGCAAAATAGAAAGGAACGATTGG
CCATCGGTGATCGGTCCTGTTGGAACAATGCTCCGTCCTCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_78:78839..80209-

>EsuBft976_3a-0001 ID=EsuBft976_3a-0001|Name=EsuBft976_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1107bp|location=Sequence derived from alignment at Scaffold_78:78839..80209- (Ectocarpus subulatus male Bft15b)
ATGCTAGACGGCGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCC
ACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATC
TGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGCACAAGTAGGGGACACG
GAAACGTCGGTTTCAGGAATGCTTTTTGCGGATAATTTTGTCGGTATGTC
GGACGCCCCTGAGGGACTGCAACTGCAAGTTGACGCGGCGAAGAAGTTTA
CTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATGATC
GCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGG
CAAAGCGCGAGCAGGGAAGCTGCACCCAATACTCGCTAACCGGCACCTCG
ACACACGCATCAAATTGACGGTTTTGAAGAGCGCGAAAGCAGCGAAAATC
ATCCTAGGATGCTCCAAGCGCACAAGTAATGCAGCCGTCAGGGCAGAATT
GGGGATCCAATCAGTACGGTCGGGAGGAGACGCGAGGAAGCTGACATGGC
AGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAATGTTGAAGGA
AGGAATAGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGAACAA
AGCTTAAGGTCAAATTCAGGACCGGGGGCATAGGCCTTCGAGAGGGTCGA
CGAAGACATAGCACGGTAGACGACGAAGACGACGAGTTCAAAAGTGATTG
CGGTTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGT
ACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATAGG
ACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGC
TATACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTA
GGATAGGCAGACTAGGGAAGACTTTTTTGAGCCACCTTGGGCAAAATAGA
AAGGAACGATTGGCCATCGGTGATCGGTCCTGTTGGAACAATGCTCCGTC
CTCNNNN
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