EsuBft976_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft976_2a-0001
Unique NameEsuBft976_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_78contigScaffold_78:82084..85217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog40559.M7U181
ProteomeIdEsuBft976_2
Protein domainsIPR001584
Protein domainsIPR013103
Protein domainsIPR012337
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl4751|Fungi
Length2252
Evalue1.34e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20YYK@147548|Leotiomycetes
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft976_2aEsuBft976_2aEctocarpus subulatus male Bft15bgeneScaffold_78 82084..85217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_2a-0001EsuBft976_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_78 82114..85197 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_2a-0001-exonagat-exon-98441Ectocarpus subulatus male Bft15bexonScaffold_78 82084..82377 -
EsuBft976_2a-0001-exonagat-exon-98438Ectocarpus subulatus male Bft15bexonScaffold_78 82511..82655 -
EsuBft976_2a-0001-exonEsuBft976_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_78 82831..83483 -
EsuBft976_2a-0001-exonagat-exon-98440Ectocarpus subulatus male Bft15bexonScaffold_78 83563..84697 -
EsuBft976_2a-0001-exonagat-exon-98439Ectocarpus subulatus male Bft15bexonScaffold_78 85193..85217 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_2a-0001-exonagat-three_prime_utr-23693Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_78 82084..82113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_2a-0001-cdsEsuBft976_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_78 82114..82377 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_2a-0001-exonagat-five_prime_utr-15423Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_78 85198..85217 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft976_2a-0001 ID=EsuBft976_2a-0001|Name=EsuBft976_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2252bp|location=Sequence derived from alignment at Scaffold_78:82084..85217- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGTGTCTCACAAGCATGAGGGGGGCGGGTACCGCGGCAAGAGGG
CGCCGAACGANTCCGGCGCGTGGGACGAGGGCGCCGGTGCCGAAACAGGG
GGGCGGGTACCGCGGCAAGAGAGCGCCAAACGACGTGTTCCACATCGACC
TCTGCGACGCGTACACGGCGACGATCGGCGGCAACCACTACATGCTCTTC
GGTGTGGACGCAGCCACGGGATGGATGGCCTGCTACGCCATGCGGCGTAA
GTCGGAGGCGCTGGGGGTCGTCAAGCGCATGGTCGTGGATGCCGCCCACA
AGGCTGGTACCGCGATCAAGTGCATCCGCTGCGACTGCGATGCTCTCTGG
ACCAGCAGCGACTTCAAAGAGTTCTGTGCCAGCATGGGGATCGCGCTCGA
GTACTCCCCTCCCGGCGTGCAGCAGTACAACGGCGTCGTCGAGAGCGCCA
TCCAGAGGTACCTCAAGGTGGCCAAGGCATCCCGCCGGGCCGCCCAGAAG
CTGCTTGGCCCCGCAGGATTTTCTCGCGTCCGCGGGCTGAGTGTTCGTGG
CGATGAGCTCTGGGCGGAGTCCGCAAAAGACGCCGCGCAGAAACTGAACC
AGTCAGCATCTCCTTCCAACCCCGGGGGTGCGTCGCCGCAGGAACTTTAC
ACCGGCAAGGGAGGCCCTTTTCGCTTGATCCCGTTCTTCCAGTACGGTTT
CATGTGGGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTCCACCCAAGCCCCAAGATCTACCCTT
CGAGATCGTCGCTTCGCCGCCACCTTCTGCTGCCGCCGCCGCCGGACCGT
CGCCGTCGCCGCCGCCTCCGGTGCCCGCGTTGTGGCCCGCGCCTTCGCCT
GGTGCTGCCGCTCCGCCGCTCCCGAGGCCGCCCGCGCCATCGACATCCGT
CGCTCCACCGCCGCCCGCTGCCGCTGCCGCCGCCGGACCGTCGCCGTCGC
CGCCGCCTCCGGGGCCCGCCTTGTGGCCCGCGCCTTCGCCTGGTGCTACC
ACTCCGCCGCTCCCGAGACCGCCCGCGTCATCGACATCCGCCGTTCCACC
GCCGCCCGCTGCCGCTGCCGCCGCCGGACCGTCACCGTCGCCGCCGCTCC
CGGACTGGTCGGGTACGCACCCCTCACGCCCCACGCTTCGAGACTGCTAG
GCGAGGGGGGAGATCCGCGGATCCGAGGACGCACGAGAGCGGAAGCGCGC
AACATCGCCCAGCAGCAGCTTTCTGCCCTATCGGTGGATCGGCAGTTCCC
ATCACTGCAGGACGACGCCGTCACCACGCCTCTCCCTCCGACCGAGATCA
CTATGGGGCTGCTAGCTCAAGCAAACGAAGACGTCCTCCTGTCCATGCTG
GATGCTCGGCGAGTCATGAACGGCAAGACAATGCTCCGGCCAGGATTGGA
GGGGGGCGGCGAGAAGGGGGGCGGAGGCGAGCAGCTCGCGAAGAGTGAGG
GGGTGGGAGAGAGCAAGGACAGTTTGTCGGGGGTGGACACCGGCGAGGGG
GGACGCATGGGGAATGATTGGTCGATCGGTCCGTCTAAGCGGGGCGTCCC
GCTTGGACTTGTGGCGCGTCTTGCGACGCGTGACGACCTTGACTCAGCTA
TGCGCGAGATGGAGCCGCCTCTCCTGCGACCCGACATGCCGCGCTGCCAC
GCCAAGGACCTCCGAGTACCCCAGACTTTCAGAGAGGCGAAGCAGAGCGA
ACACAGCGAGCAGTTAATGGATGTGGCCAAGCGTGAGGTGTTTGGATTGC
TAGAAGCAGACGCGTCGGTTTCGGGAGGGGTAGTGATGTGTGCAGGAGGG
GCAATTGCATGGTTCTCCAAGACTCAGAAGTGTGTGACTTTGTCTACCAC
GCAGGCTGAATACGTGGCAATGGCGGACATGGGGAAGGAGATTTTGTTTT
TGAGGCAGGCCTTTGTGAGGGCCCCTCTCAAGGAAGGTATTTTTATGCGA
ATGCCGGAAGGATGTGGTGCGTTGTCGGGGAAGATAGTGCAGTTGAACAA
GAGTCTTTATGGCTTGAGGCAGGCATCTAGGGAGTGGTACGCGTTGCTCA
AAAAGTGTCTTTTGGCTTTGGGGTTCGAGCAGTGCATGGCTGATCCTTGT
GTTTTTCGTTTTGTCGAAGGGGGGGAAGNAGAGTTTGTTTTCCACCGGGA
CTACGTGATGAATTTGAAGTGAGAAGTCAAGGAGATTCTTTTTGCCTTCG
AG
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protein sequence of EsuBft976_2a-0001

>EsuBft976_2 ID=EsuBft976_2|Name=EsuBft976_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=733bp
MRGAGTAARGRRTXPARGTRAPVPKQGGGYRGKRAPNDVFHIDLCDAYTA
TIGGNHYMLFGVDAATGWMACYAMRRKSEALGVVKRMVVDAAHKAGTAIK
CIRCDCDALWTSSDFKEFCASMGIALEYSPPGVQQYNGVVESAIQRYLKV
AKASRRAAQKLLGPAGFSRVRGLSVRGDELWAESAKDAAQKLNQSASPSN
PGGASPQELYTGKGGPFRLIPFFQYGFMWERXXXXXXXXXXXXXXXXXXX
XSTQAPRSTLRDRRFAATFCCRRRRTVAVAAASGARVVARAFAWCCRSAA
PEAARAIDIRRSTAARCRCRRRTVAVAAASGARLVARAFAWCYHSAAPET
ARVIDIRRSTAARCRCRRRTVTVAAAPGLVGYAPLTPHASRLLGEGGDPR
IRGRTRAEARNIAQQQLSALSVDRQFPSLQDDAVTTPLPPTEITMGLLAQ
ANEDVLLSMLDARRVMNGKTMLRPGLEGGGEKGGGGEQLAKSEGVGESKD
SLSGVDTGEGGRMGNDWSIGPSKRGVPLGLVARLATRDDLDSAMREMEPP
LLRPDMPRCHAKDLRVPQTFREAKQSEHSEQLMDVAKREVFGLLEADASV
SGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQAFVR
APLKEGIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLAL
GFEQCMADPCVFRFVEGGEXEFVFHRDYVMNLK
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mRNA from alignment at Scaffold_78:82084..85217-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft976_2a-0001 ID=EsuBft976_2a-0001|Name=EsuBft976_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3134bp|location=Sequence derived from alignment at Scaffold_78:82084..85217- (Ectocarpus subulatus male Bft15b)
ATGGAAGGTGTCTCACAAGCATGAGGTCCGTATCAACCCCAACGGTACAC
AAATGATGCACGGAAAACTGCGTTTCATTCGTGGCGCTTCGAGCGATTCC
CTTTTTGCAACCCGCCTTCCCCACAAATCCCTGCCCTCCATGGACGTTGC
GCGTGAGAGTCCCCGTGAAAGTGCGTTTTCCTTTGTGGCATCGGCTCTTA
CAGCCGCGATGGATTCCGACTTTGAACCCCCCCGTGTGACGGATGCTGTA
GCGGAGTACTCGGCAAATACGATTGATGTGTGGGAGAGTGATGAGTGTGA
GCGCGCTATGGCTGTGTTGGGTTCTGGGAAGACGCCTTTCAATGTCGGCA
ATGCACAAAAGGTCATGGATATTAACACGTTCCACTCCCGTGCCGGCCAC
TTGTCCGAACCCATTTTGAGGCTGTCCGCAAAGCAGCACGGGATTACCCT
CACGGGCACGATGGACAGCTGCCGCTGGTGCTTGCCGGCGCGTGGGACGA
GGGCACCGGTGCCGAAGCAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCG
AACGANTCCGGCGCGTGGGACGAGGGCGCCGGTGCCGAAACAGGGGGGCG
GGTACCGCGGCAAGAGAGCGCCAAACGACGTGTTCCACATCGACCTCTGC
GACGCGTACACGGCGACGATCGGCGGCAACCACTACATGCTCTTCGGTGT
GGACGCAGCCACGGGATGGATGGCCTGCTACGCCATGCGGCGTAAGTCGG
AGGCGCTGGGGGTCGTCAAGCGCATGGTCGTGGATGCCGCCCACAAGGCT
GGTACCGCGATCAAGTGCATCCGCTGCGACTGCGATGCTCTCTGGACCAG
CAGCGACTTCAAAGAGTTCTGTGCCAGCATGGGGATCGCGCTCGAGTACT
CCCCTCCCGGCGTGCAGCAGTACAACGGCGTCGTCGAGAGCGCCATCCAG
AGGTACCTCAAGGTGGCCAAGGCATCCCGCCGGGCCGCCCAGAAGCTGCT
TGGCCCCGCAGGATTTTCTCGCGTCCGCGGGCTGAGTGTTCGTGGCGATG
AGCTCTGGGCGGAGTCCGCAAAAGACGCCGCGCAGAAACTGAACCAGTCA
GCATCTCCTTCCAACCCCGGGGGTGCGTCGCCGCAGGAACTTTACACCGG
CAAGGGAGGCCCTTTTCGCTTGATCCCGTTCTTCCAGTACGGTTTCATGT
GGGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTCCACCCAAGCCCCAAGATCTACCCTTCGAGA
TCGTCGCTTCGCCGCCACCTTCTGCTGCCGCCGCCGCCGGACCGTCGCCG
TCGCCGCCGCCTCCGGTGCCCGCGTTGTGGCCCGCGCCTTCGCCTGGTGC
TGCCGCTCCGCCGCTCCCGAGGCCGCCCGCGCCATCGACATCCGTCGCTC
CACCGCCGCCCGCTGCCGCTGCCGCCGCCGGACCGTCGCCGTCGCCGCCG
CCTCCGGGGCCCGCCTTGTGGCCCGCGCCTTCGCCTGGTGCTACCACTCC
GCCGCTCCCGAGACCGCCCGCGTCATCGACATCCGCCGTTCCACCGCCGC
CCGCTGCCGCTGCCGCCGCCGGACCGTCACCGTCGCCGCCGCTCCCGGAC
TGGTCGTCCTCATACATCGAGGCTGAGCAGTCCCCGTCGCAACCGCACCA
AGACCGGCGGACCCGACAGTCGGCGACCGCACAGGGGTACGCACCCCTCA
CGCCCCACGCTTCGAGACTGCTAGGCGAGGGGGGAGATCCGCGGATCCGA
GGACGCACGAGAGCGGAAGCGCGCAACATCGCCCAGCAGCAGCTTTCTGC
CCTATCGGTGGATCGGCAGTTCCCATCACTGCAGGACGACGCCGTCACCA
CGCCTCTCCCTCCGACCGAGATCACTATGGGGCTGCTAGCTCAAGCAAAC
GAAGACGTCCTCCTGTCCATGCTGGATGCTCGGCGAGTCATGAACGGCAA
GACAATGCTCCGGCCAGGATTGGAGGGGGGCGGCGAGAAGGGGGGCGGAG
GCGAGCAGCTCGCGAAGAGTGAGGGGGTGGGAGAGAGCAAGGACAGTTTG
TCGGGGGTGGACACCGGCGAGGGGGGACGCATGGGGAATGATTGGTCGAT
CGGTCCGTCTAAGCGGGGCGTCCCGCTTGGACTTGTGGCGCGTCTTGCGA
CGCGTGACGACCTTGACTCAGCTATGCGCGAGATGGAGCCGCCTCTCCTG
CGACCCGACATGCCGCGCTGCCACGCCAAGGACCTCCGAGTACCCCAGAC
TTTCAGAGAGGCGAAGCAGAGCGAACACAGCGAGCAGTTAATGGATGTGG
CCAAGCGTGAGGTGTTTGGATTGCTAGAAGCAGACGCGTTTAAGATTGTT
GGACCGTAGCAGCGAATAGACAACTGCATCTAGTCGACGCTTCTTTTTGA
TTGGAAGGTAGATGCGTTCGACTTTCCTACAAAGGCCAAGGCTAGACTTG
TTCCGAGAGGAGACATGCAGAAGGAGTACATTGACTTTGGCGATTTTANC
GGCAGACCGTAGGTCGGTTTCGGGAGGGGTAGTGATGTGTGCAGGAGGGG
CAATTGCATGGTTCTCCAAGACTCAGAAGTGTGTGACTTTGTCTACCACG
CAGGCTGAATACGTGGCAATGGCGGACATGGGGAAGGAGATTTTGTTTTT
GAGGCAGGTTTGGCGTTTCATGTTGCCGAAGGAGTTGCGGCCATGCATTC
CACTGTATGAGGATAACGAAGGTGCTATTATACAGATCGCAAAACACCCG
ATCTCGAATTCCAAGTTGNTGTCACTTCGATATCGATCAGGCCTTTGTGA
GGGCCCCTCTCAAGGAAGGTATTTTTATGCGAATGCCGGAAGGATGTGGT
GCGTTGTCGGGGAAGATAGTGCAGTTGAACAAGAGTCTTTATGGCTTGAG
GCAGGCATCTAGGGAGTGGTACGCGTTGCTCAAAAAGTGTCTTTTGGCTT
TGGGGTTCGAGCAGTGCATGGCTGATCCTTGTGTTTTTCGTTTTGTCGAA
GGGGGGGAAGNAGAGTTTGTTTTCCACCGGGACTACGTGATGAATTTGAA
GTGAGAAGTCAAGGAGATTCTTTTTGCCTTCGAG
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Coding sequence (CDS) from alignment at Scaffold_78:82084..85217-

>EsuBft976_2a-0001 ID=EsuBft976_2a-0001|Name=EsuBft976_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2202bp|location=Sequence derived from alignment at Scaffold_78:82084..85217- (Ectocarpus subulatus male Bft15b)
ATGAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCGAACGANTCCGGCGCG
TGGGACGAGGGCGCCGGTGCCGAAACAGGGGGGCGGGTACCGCGGCAAGA
GAGCGCCAAACGACGTGTTCCACATCGACCTCTGCGACGCGTACACGGCG
ACGATCGGCGGCAACCACTACATGCTCTTCGGTGTGGACGCAGCCACGGG
ATGGATGGCCTGCTACGCCATGCGGCGTAAGTCGGAGGCGCTGGGGGTCG
TCAAGCGCATGGTCGTGGATGCCGCCCACAAGGCTGGTACCGCGATCAAG
TGCATCCGCTGCGACTGCGATGCTCTCTGGACCAGCAGCGACTTCAAAGA
GTTCTGTGCCAGCATGGGGATCGCGCTCGAGTACTCCCCTCCCGGCGTGC
AGCAGTACAACGGCGTCGTCGAGAGCGCCATCCAGAGGTACCTCAAGGTG
GCCAAGGCATCCCGCCGGGCCGCCCAGAAGCTGCTTGGCCCCGCAGGATT
TTCTCGCGTCCGCGGGCTGAGTGTTCGTGGCGATGAGCTCTGGGCGGAGT
CCGCAAAAGACGCCGCGCAGAAACTGAACCAGTCAGCATCTCCTTCCAAC
CCCGGGGGTGCGTCGCCGCAGGAACTTTACACCGGCAAGGGAGGCCCTTT
TCGCTTGATCCCGTTCTTCCAGTACGGTTTCATGTGGGAGCGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTCCACCCAAGCCCCAAGATCTACCCTTCGAGATCGTCGCTTCGCCGC
CACCTTCTGCTGCCGCCGCCGCCGGACCGTCGCCGTCGCCGCCGCCTCCG
GTGCCCGCGTTGTGGCCCGCGCCTTCGCCTGGTGCTGCCGCTCCGCCGCT
CCCGAGGCCGCCCGCGCCATCGACATCCGTCGCTCCACCGCCGCCCGCTG
CCGCTGCCGCCGCCGGACCGTCGCCGTCGCCGCCGCCTCCGGGGCCCGCC
TTGTGGCCCGCGCCTTCGCCTGGTGCTACCACTCCGCCGCTCCCGAGACC
GCCCGCGTCATCGACATCCGCCGTTCCACCGCCGCCCGCTGCCGCTGCCG
CCGCCGGACCGTCACCGTCGCCGCCGCTCCCGGACTGGTCGGGTACGCAC
CCCTCACGCCCCACGCTTCGAGACTGCTAGGCGAGGGGGGAGATCCGCGG
ATCCGAGGACGCACGAGAGCGGAAGCGCGCAACATCGCCCAGCAGCAGCT
TTCTGCCCTATCGGTGGATCGGCAGTTCCCATCACTGCAGGACGACGCCG
TCACCACGCCTCTCCCTCCGACCGAGATCACTATGGGGCTGCTAGCTCAA
GCAAACGAAGACGTCCTCCTGTCCATGCTGGATGCTCGGCGAGTCATGAA
CGGCAAGACAATGCTCCGGCCAGGATTGGAGGGGGGCGGCGAGAAGGGGG
GCGGAGGCGAGCAGCTCGCGAAGAGTGAGGGGGTGGGAGAGAGCAAGGAC
AGTTTGTCGGGGGTGGACACCGGCGAGGGGGGACGCATGGGGAATGATTG
GTCGATCGGTCCGTCTAAGCGGGGCGTCCCGCTTGGACTTGTGGCGCGTC
TTGCGACGCGTGACGACCTTGACTCAGCTATGCGCGAGATGGAGCCGCCT
CTCCTGCGACCCGACATGCCGCGCTGCCACGCCAAGGACCTCCGAGTACC
CCAGACTTTCAGAGAGGCGAAGCAGAGCGAACACAGCGAGCAGTTAATGG
ATGTGGCCAAGCGTGAGGTGTTTGGATTGCTAGAAGCAGACGCGTCGGTT
TCGGGAGGGGTAGTGATGTGTGCAGGAGGGGCAATTGCATGGTTCTCCAA
GACTCAGAAGTGTGTGACTTTGTCTACCACGCAGGCTGAATACGTGGCAA
TGGCGGACATGGGGAAGGAGATTTTGTTTTTGAGGCAGGCCTTTGTGAGG
GCCCCTCTCAAGGAAGGTATTTTTATGCGAATGCCGGAAGGATGTGGTGC
GTTGTCGGGGAAGATAGTGCAGTTGAACAAGAGTCTTTATGGCTTGAGGC
AGGCATCTAGGGAGTGGTACGCGTTGCTCAAAAAGTGTCTTTTGGCTTTG
GGGTTCGAGCAGTGCATGGCTGATCCTTGTGTTTTTCGTTTTGTCGAAGG
GGGGGAAGNAGAGTTTGTTTTCCACCGGGACTACGTGATGAATTTGAAGT
GA
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