EsuBft976_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft976_10a-0001
Unique NameEsuBft976_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_78contigScaffold_78:34503..35047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft976_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft976_10aEsuBft976_10aEctocarpus subulatus male Bft15bgeneScaffold_78 34503..35047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_10a-0001-exonEsuBft976_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_78 34503..35047 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_10a-0001-exonagat-three_prime_utr-23689Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_78 34503..34730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_10a-0001-cdsEsuBft976_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_78 34731..34880 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_10a-0001-exonagat-five_prime_utr-15421Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_78 34881..35047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft976_10a-0001EsuBft976_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_78 34731..34880 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft976_10a-0001 ID=EsuBft976_10a-0001|Name=EsuBft976_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=545bp|location=Sequence derived from alignment at Scaffold_78:34503..35047- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTAGTGAGTCCCTCGCG
GGCAAACCAGGCCACAACAGATAGTAGGTGGGTAGTGTCCCAAGGTGCAA
CTCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCACAGACGGTGGT
AGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCAGCAGTAATGCAAAGC
GGCAAACTGCACCTGGCAACCACCGTCGCGGAAAGCGCGGCCCACGAAGC
TGGAGGAGTAGAGAGATTCGTAAACACCACGTCAGTAAGCACCGCTCGCG
GGAGAAGGGAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft976_10a-0001

>EsuBft976_10 ID=EsuBft976_10|Name=EsuBft976_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MDTVPAAVMQSGKLHLATTVAESAAHEAGGVERFVNTTSVSTARGRRETX
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mRNA from alignment at Scaffold_78:34503..35047-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft976_10a-0001 ID=EsuBft976_10a-0001|Name=EsuBft976_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=545bp|location=Sequence derived from alignment at Scaffold_78:34503..35047- (Ectocarpus subulatus male Bft15b)
TCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTAGTGAGTCCCTCGCG
GGCAAACCAGGCCACAACAGATAGTAGGTGGGTAGTGTCCCAAGGTGCAA
CTCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCACAGACGGTGGT
AGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCAGCAGTAATGCAAAGC
GGCAAACTGCACCTGGCAACCACCGTCGCGGAAAGCGCGGCCCACGAAGC
TGGAGGAGTAGAGAGATTCGTAAACACCACGTCAGTAAGCACCGCTCGCG
GGAGAAGGGAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_78:34503..35047-

>EsuBft976_10a-0001 ID=EsuBft976_10a-0001|Name=EsuBft976_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_78:34503..35047- (Ectocarpus subulatus male Bft15b)
ATGGACACTGTTCCCGCAGCAGTAATGCAAAGCGGCAAACTGCACCTGGC
AACCACCGTCGCGGAAAGCGCGGCCCACGAAGCTGGAGGAGTAGAGAGAT
TCGTAAACACCACGTCAGTAAGCACCGCTCGCGGGAGAAGGGAGACANNN
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