EsuBft975_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft975_9a-0001
Unique Name	EsuBft975_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_553	contig	Scaffold_553:1338..3811 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft975_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	240
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft975_9a	EsuBft975_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_553 1338..3811 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_9a-0001-exon	agat-exon-46344	Ectocarpus subulatus male Bft15b	exon	Scaffold_553 1338..2658 +
EsuBft975_9a-0001-exon	EsuBft975_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_553 2724..3811 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_9a-0001-cds	EsuBft975_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_553 1338..2658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_9a-0001	EsuBft975_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_553 1338..3811 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_553:1338..3811+
coding sequence from alignment at Scaffold_553:1338..3811+

spliced messenger RNA

>EsuBft975_9a-0001 ID=EsuBft975_9a-0001|Name=EsuBft975_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2409bp|location=Sequence derived from alignment at Scaffold_553:1338..3811+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCCTTTTCCCGAATCGCCCGGGTGCTACGGTTTTCCTGGGACA
CACCAGTGCCAAGATCCACGTGGCCCGCTCGGAGGACAAGGTGGACAACA
GGCGTCTACCGCGCCCGCAGGAACAGTTGCTCATGCTCTCCGACGGAAGA
CGAGTTCCGGTTAAACTCTTTGGCGACCTGGATGTGGTTTTCCATTGCCA
AAGAGATGTGTGCGTGACGCTCACAGGTGTTAGTGTTGTGCCGGGTTTGG
TGCTCATGGGTGTTGGTGCTCTGCCGGGTTTGGCGCTCGACCTTCTGTCT
TTCTCACGGATACAGGAAAGGTACGACATCGTCCTGAAGTGGCAGGGGGC
GAAGACTGTGGGTGGGCAAGTGCAGTTCACCAAAATCGTCCTTGGCAACT
ACATCCTGGTAACCCCCGTCGATCCACTGCCTTCGCCCCCTGCGAGTCCC
GCGGAGATGAGGCGGGCTAGAGCGGCGGCATGGGCGGCGATTTCAGCGGC
GACGACGGCGGCGCCCGATGATCGTGTTTTCCCCGCAGTGGCGTCGGGAA
GGATGGCAGGAGCGCCCGCAATGGCGACTGGAGCGGCGGCATCGGCGGGA
GCTCCAGCGGCGACAGCGGCGACGGCGGCGACGGCGGTGATATCCGGTGG
CAGTGTTTCCCCCGCGGCGGCGGCGGGGGGGCTGGCCGGAGTCCCCGCGG
TGGCGGCAGGAGCCGCAGCATTGACAGCGGCTTCAGCAGCGACGGCAGCG
GCCTCTGGCGGCAGTGTTTCCCCCGCAGCGGCGACGGGGGGGATGGCCGG
AGTCCTCGCGGTGGCGGTAGAAGCAGCGGCATCGGCGGCAGCTCCAGCGG
CAACGGCGGCGATCTCCGATGGCAGTGTTCCGGCGGCGGCAGGGGGGATG
GCCGGAGTCCCCGCGGTGGCAGCAGGAACAGCGGCATCGGTGGCAGCTCC
AGCGGCGACGGCGGCGGTCTCCGGTGACAATGTTCCCCCCGCGGCGGCGG
CGGCGGCGGAGGTGGCCGGAGTCCCCGCGGTGGCAGCAGGAGCGGCGGCA
TCGGCAGCAGCTCCAGAGGCCACTACGGCGACCTCTGGCGGTGGTATCCT
CCCCGCGACGGCGACGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAG
GAGCGGCGGCATCGGTAGCAGCTCCAGAGGCCACTACGGCGACCTACGGC
GGCGGTAGTGTTTCCCTCGCAGCGACGTCGGCGGGGGGAATGGCGGGGGT
CCCTGCAATGGCGGCAGGAGCGGCGGCATCGGCAGCAGCTCCGGAGGCGA
CGGCGGCGACCTACGGCGGCGGAGCGGCGGCATCGGTAGCAGCTCCAGAG
GCCACTACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAGCGACGTC
GGCGGGGGGAATGGCGGGGGTCCCTGCAATGGCGGCAGGAGCGGCGGCAT
CGGCAGCAGCTCCGGAGGCGACGGCGGCGACCTACGGCGGCGGTAGTGTT
TCCCTCGCAGCGACGGCGGGGGAAGCGCCCGGAGGGCTCGCGGCGGCAGC
TGGAGCAGCGGCATCGGCGGCGGTTCCAGCGGCGACGGCGGCGGTGCCCG
GCGACACTGTTATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCC
GCGTTGGTGGTTAGAGCGTCGGCATCGACGGCGGTTCCAGCGGCGACGGC
GGCGGCAGCTGACGGTGTTCTTTCTCCCGCTGCGGCGGCGGGGAGAATGG
CTCGAGAGCCCGCGCAGGTGGCTACAGCGGTGGCATCGGCGGCTCGAGTG
GCGACATCGGTGGCGGCACCACCCGCGACCGCGGCTGCGGCACCGACCGC
TACGATGGCAACCGTCGGTGACGTTTCCCCCACCATATCGGTTCGGGGGG
CGGCCAGCAACGGAGAAGCGGTGGTCAACGGCATCGGCGACGGCAGCGAT
GATGGCGGTTGGTGCGCATTTGAGGTTGATGACTGCTTGGATGACAGCGT
CTGTAGCGAGAGGGGGGCGTCCACGCACCCTTTCGATCCCGGCACCGTGT
CTTCGGGGGGGCGCGGCACCAACGATCCCGGGGTGGACGACCTGGTCGGT
GGCCCCGGCAGCAGCGGCGGCAGCGGCACCAGCGGCACCAGCACCAGAAG
CGGCAGCAGTAGCAATGACAAGGCAGAGGGGATGGATGTGGCCTGGTTTC
GGGCACTGCTGCGCCCCTTCGACCCGGGGAAGCTGTACCGGCTGAAGGCT
GGGAGCGTGGGGCCGGTGATGGGGTTGGACACCCCGTTCGACCGTGGAAA
GATGTCGCGGGGGCAACGGCCGGGGCGCCCGTGTTCGCGACTGGAGCAGC
GGCAGGAGGACCGTGAAGCGGAGAAGGGAGTTCGGAGGATCGGGCGAGTC
CAACAATGA

protein sequence of EsuBft975_9a-0001

>EsuBft975_9 ID=EsuBft975_9|Name=EsuBft975_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=802bp
MPALFPNRPGATVFLGHTSAKIHVARSEDKVDNRRLPRPQEQLLMLSDGR
RVPVKLFGDLDVVFHCQRDVCVTLTGVSVVPGLVLMGVGALPGLALDLLS
FSRIQERYDIVLKWQGAKTVGGQVQFTKIVLGNYILVTPVDPLPSPPASP
AEMRRARAAAWAAISAATTAAPDDRVFPAVASGRMAGAPAMATGAAASAG
APAATAATAATAVISGGSVSPAAAAGGLAGVPAVAAGAAALTAASAATAA
ASGGSVSPAAATGGMAGVLAVAVEAAASAAAPAATAAISDGSVPAAAGGM
AGVPAVAAGTAASVAAPAATAAVSGDNVPPAAAAAAEVAGVPAVAAGAAA
SAAAPEATTATSGGGILPATATGGMAGVPAVVAGAAASVAAPEATTATYG
GGSVSLAATSAGGMAGVPAMAAGAAASAAAPEATAATYGGGAAASVAAPE
ATTATYGGGSVSLAATSAGGMAGVPAMAAGAAASAAAPEATAATYGGGSV
SLAATAGEAPGGLAAAAGAAASAAVPAATAAVPGDTVISATVAGRTTRAP
ALVVRASASTAVPAATAAAADGVLSPAAAAGRMAREPAQVATAVASAARV
ATSVAAPPATAAAAPTATMATVGDVSPTISVRGAASNGEAVVNGIGDGSD
DGGWCAFEVDDCLDDSVCSERGASTHPFDPGTVSSGGRGTNDPGVDDLVG
GPGSSGGSGTSGTSTRSGSSSNDKAEGMDVAWFRALLRPFDPGKLYRLKA
GSVGPVMGLDTPFDRGKMSRGQRPGRPCSRLEQRQEDREAEKGVRRIGRV
QQ

mRNA from alignment at Scaffold_553:1338..3811+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft975_9a-0001 ID=EsuBft975_9a-0001|Name=EsuBft975_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2474bp|location=Sequence derived from alignment at Scaffold_553:1338..3811+ (Ectocarpus subulatus male Bft15b)
ATGCCCGCCCTTTTCCCGAATCGCCCGGGTGCTACGGTTTTCCTGGGACA
CACCAGTGCCAAGATCCACGTGGCCCGCTCGGAGGACAAGGTGGACAACA
GGCGTCTACCGCGCCCGCAGGAACAGTTGCTCATGCTCTCCGACGGAAGA
CGAGTTCCGGTTAAACTCTTTGGCGACCTGGATGTGGTTTTCCATTGCCA
AAGAGATGTGTGCGTGACGCTCACAGGTGTTAGTGTTGTGCCGGGTTTGG
TGCTCATGGGTGTTGGTGCTCTGCCGGGTTTGGCGCTCGACCTTCTGTCT
TTCTCACGGATACAGGAAAGGTACGACATCGTCCTGAAGTGGCAGGGGGC
GAAGACTGTGGGTGGGCAAGTGCAGTTCACCAAAATCGTCCTTGGCAACT
ACATCCTGGTAACCCCCGTCGATCCACTGCCTTCGCCCCCTGCGAGTCCC
GCGGAGATGAGGCGGGCTAGAGCGGCGGCATGGGCGGCGATTTCAGCGGC
GACGACGGCGGCGCCCGATGATCGTGTTTTCCCCGCAGTGGCGTCGGGAA
GGATGGCAGGAGCGCCCGCAATGGCGACTGGAGCGGCGGCATCGGCGGGA
GCTCCAGCGGCGACAGCGGCGACGGCGGCGACGGCGGTGATATCCGGTGG
CAGTGTTTCCCCCGCGGCGGCGGCGGGGGGGCTGGCCGGAGTCCCCGCGG
TGGCGGCAGGAGCCGCAGCATTGACAGCGGCTTCAGCAGCGACGGCAGCG
GCCTCTGGCGGCAGTGTTTCCCCCGCAGCGGCGACGGGGGGGATGGCCGG
AGTCCTCGCGGTGGCGGTAGAAGCAGCGGCATCGGCGGCAGCTCCAGCGG
CAACGGCGGCGATCTCCGATGGCAGTGTTCCGGCGGCGGCAGGGGGGATG
GCCGGAGTCCCCGCGGTGGCAGCAGGAACAGCGGCATCGGTGGCAGCTCC
AGCGGCGACGGCGGCGGTCTCCGGTGACAATGTTCCCCCCGCGGCGGCGG
CGGCGGCGGAGGTGGCCGGAGTCCCCGCGGTGGCAGCAGGAGCGGCGGCA
TCGGCAGCAGCTCCAGAGGCCACTACGGCGACCTCTGGCGGTGGTATCCT
CCCCGCGACGGCGACGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAG
GAGCGGCGGCATCGGTAGCAGCTCCAGAGGCCACTACGGCGACCTACGGC
GGCGGTAGTGTTTCCCTCGCAGCGACGTCGGCGGGGGGAATGGCGGGGGT
CCCTGCAATGGCGGCAGGAGCGGCGGCATCGGCAGCAGCTCCGGAGGCGA
CGGCGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGG
GAAGCGNAATGGCCGGGGTCCCTGGAGTGGTGGCAGGAGCGGCGGCATCG
GTAGCAGCTCCAGAGGCCACTACGGCGACCTACGGCGGCGGTAGTGTTTC
CCTCGCAGCGACGTCGGCGGGGGGAATGGCGGGGGTCCCTGCAATGGCGG
CAGGAGCGGCGGCATCGGCAGCAGCTCCGGAGGCGACGGCGGCGACCTAC
GGCGGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGAAGCGCCCGGAGG
GCTCGCGGCGGCAGCTGGAGCAGCGGCATCGGCGGCGGTTCCAGCGGCGA
CGGCGGCGGTGCCCGGCGACACTGTTATCTCCGCGACGGTGGCGGGGAGA
ACGACCAGAGCGCCCGCGTTGGTGGTTAGAGCGTCGGCATCGACGGCGGT
TCCAGCGGCGACGGCGGCGGCAGCTGACGGTGTTCTTTCTCCCGCTGCGG
CGGCGGGGAGAATGGCTCGAGAGCCCGCGCAGGTGGCTACAGCGGTGGCA
TCGGCGGCTCGAGTGGCGACATCGGTGGCGGCACCACCCGCGACCGCGGC
TGCGGCACCGACCGCTACGATGGCAACCGTCGGTGACGTTTCCCCCACCA
TATCGGTTCGGGGGGCGGCCAGCAACGGAGAAGCGGTGGTCAACGGCATC
GGCGACGGCAGCGATGATGGCGGTTGGTGCGCATTTGAGGTTGATGACTG
CTTGGATGACAGCGTCTGTAGCGAGAGGGGGGCGTCCACGCACCCTTTCG
ATCCCGGCACCGTGTCTTCGGGGGGGCGCGGCACCAACGATCCCGGGGTG
GACGACCTGGTCGGTGGCCCCGGCAGCAGCGGCGGCAGCGGCACCAGCGG
CACCAGCACCAGAAGCGGCAGCAGTAGCAATGACAAGGCAGAGGGGATGG
ATGTGGCCTGGTTTCGGGCACTGCTGCGCCCCTTCGACCCGGGGAAGCTG
TACCGGCTGAAGGCTGGGAGCGTGGGGCCGGTGATGGGGTTGGACACCCC
GTTCGACCGTGGAAAGATGTCGCGGGGGCAACGGCCGGGGCGCCCGTGTT
CGCGACTGGAGCAGCGGCAGGAGGACCGTGAAGCGGAGAAGGGAGTTCGG
AGGATCGGGCGAGTCCAACAATGA

Coding sequence (CDS) from alignment at Scaffold_553:1338..3811+

>EsuBft975_9a-0001 ID=EsuBft975_9a-0001|Name=EsuBft975_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2409bp|location=Sequence derived from alignment at Scaffold_553:1338..3811+ (Ectocarpus subulatus male Bft15b)
ATGCCCGCCCTTTTCCCGAATCGCCCGGGTGCTACGGTTTTCCTGGGACA
CACCAGTGCCAAGATCCACGTGGCCCGCTCGGAGGACAAGGTGGACAACA
GGCGTCTACCGCGCCCGCAGGAACAGTTGCTCATGCTCTCCGACGGAAGA
CGAGTTCCGGTTAAACTCTTTGGCGACCTGGATGTGGTTTTCCATTGCCA
AAGAGATGTGTGCGTGACGCTCACAGGTGTTAGTGTTGTGCCGGGTTTGG
TGCTCATGGGTGTTGGTGCTCTGCCGGGTTTGGCGCTCGACCTTCTGTCT
TTCTCACGGATACAGGAAAGGTACGACATCGTCCTGAAGTGGCAGGGGGC
GAAGACTGTGGGTGGGCAAGTGCAGTTCACCAAAATCGTCCTTGGCAACT
ACATCCTGGTAACCCCCGTCGATCCACTGCCTTCGCCCCCTGCGAGTCCC
GCGGAGATGAGGCGGGCTAGAGCGGCGGCATGGGCGGCGATTTCAGCGGC
GACGACGGCGGCGCCCGATGATCGTGTTTTCCCCGCAGTGGCGTCGGGAA
GGATGGCAGGAGCGCCCGCAATGGCGACTGGAGCGGCGGCATCGGCGGGA
GCTCCAGCGGCGACAGCGGCGACGGCGGCGACGGCGGTGATATCCGGTGG
CAGTGTTTCCCCCGCGGCGGCGGCGGGGGGGCTGGCCGGAGTCCCCGCGG
TGGCGGCAGGAGCCGCAGCATTGACAGCGGCTTCAGCAGCGACGGCAGCG
GCCTCTGGCGGCAGTGTTTCCCCCGCAGCGGCGACGGGGGGGATGGCCGG
AGTCCTCGCGGTGGCGGTAGAAGCAGCGGCATCGGCGGCAGCTCCAGCGG
CAACGGCGGCGATCTCCGATGGCAGTGTTCCGGCGGCGGCAGGGGGGATG
GCCGGAGTCCCCGCGGTGGCAGCAGGAACAGCGGCATCGGTGGCAGCTCC
AGCGGCGACGGCGGCGGTCTCCGGTGACAATGTTCCCCCCGCGGCGGCGG
CGGCGGCGGAGGTGGCCGGAGTCCCCGCGGTGGCAGCAGGAGCGGCGGCA
TCGGCAGCAGCTCCAGAGGCCACTACGGCGACCTCTGGCGGTGGTATCCT
CCCCGCGACGGCGACGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAG
GAGCGGCGGCATCGGTAGCAGCTCCAGAGGCCACTACGGCGACCTACGGC
GGCGGTAGTGTTTCCCTCGCAGCGACGTCGGCGGGGGGAATGGCGGGGGT
CCCTGCAATGGCGGCAGGAGCGGCGGCATCGGCAGCAGCTCCGGAGGCGA
CGGCGGCGACCTACGGCGGCGGAGCGGCGGCATCGGTAGCAGCTCCAGAG
GCCACTACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAGCGACGTC
GGCGGGGGGAATGGCGGGGGTCCCTGCAATGGCGGCAGGAGCGGCGGCAT
CGGCAGCAGCTCCGGAGGCGACGGCGGCGACCTACGGCGGCGGTAGTGTT
TCCCTCGCAGCGACGGCGGGGGAAGCGCCCGGAGGGCTCGCGGCGGCAGC
TGGAGCAGCGGCATCGGCGGCGGTTCCAGCGGCGACGGCGGCGGTGCCCG
GCGACACTGTTATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCC
GCGTTGGTGGTTAGAGCGTCGGCATCGACGGCGGTTCCAGCGGCGACGGC
GGCGGCAGCTGACGGTGTTCTTTCTCCCGCTGCGGCGGCGGGGAGAATGG
CTCGAGAGCCCGCGCAGGTGGCTACAGCGGTGGCATCGGCGGCTCGAGTG
GCGACATCGGTGGCGGCACCACCCGCGACCGCGGCTGCGGCACCGACCGC
TACGATGGCAACCGTCGGTGACGTTTCCCCCACCATATCGGTTCGGGGGG
CGGCCAGCAACGGAGAAGCGGTGGTCAACGGCATCGGCGACGGCAGCGAT
GATGGCGGTTGGTGCGCATTTGAGGTTGATGACTGCTTGGATGACAGCGT
CTGTAGCGAGAGGGGGGCGTCCACGCACCCTTTCGATCCCGGCACCGTGT
CTTCGGGGGGGCGCGGCACCAACGATCCCGGGGTGGACGACCTGGTCGGT
GGCCCCGGCAGCAGCGGCGGCAGCGGCACCAGCGGCACCAGCACCAGAAG
CGGCAGCAGTAGCAATGACAAGGCAGAGGGGATGGATGTGGCCTGGTTTC
GGGCACTGCTGCGCCCCTTCGACCCGGGGAAGCTGTACCGGCTGAAGGCT
GGGAGCGTGGGGCCGGTGATGGGGTTGGACACCCCGTTCGACCGTGGAAA
GATGTCGCGGGGGCAACGGCCGGGGCGCCCGTGTTCGCGACTGGAGCAGC
GGCAGGAGGACCGTGAAGCGGAGAAGGGAGTTCGGAGGATCGGGCGAGTC
CAACAATGA