EsuBft975_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft975_7a-0001
Unique Name	EsuBft975_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_553	contig	Scaffold_553:9815..13283 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft975_7
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	259
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft975_7a	EsuBft975_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_553 9815..13283 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_7a-0001	EsuBft975_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_553 9846..12373 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_7a-0001-exon	agat-exon-46339	Ectocarpus subulatus male Bft15b	exon	Scaffold_553 9815..9908 +
EsuBft975_7a-0001-exon	agat-exon-46341	Ectocarpus subulatus male Bft15b	exon	Scaffold_553 10407..11168 +
EsuBft975_7a-0001-exon	EsuBft975_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_553 11331..11894 +
EsuBft975_7a-0001-exon	agat-exon-46340	Ectocarpus subulatus male Bft15b	exon	Scaffold_553 12113..13283 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_7a-0001-exon	agat-five_prime_utr-15419	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_553 9815..9845 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_7a-0001-cds	EsuBft975_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_553 9846..9908 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft975_7a-0001-exon	agat-three_prime_utr-23687	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_553 12374..13283 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_553:9815..13283+
coding sequence from alignment at Scaffold_553:9815..13283+

spliced messenger RNA

>EsuBft975_7a-0001 ID=EsuBft975_7a-0001|Name=EsuBft975_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2591bp|location=Sequence derived from alignment at Scaffold_553:9815..13283+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATCATAGCCTCTTTGATCCGAAATCGGACAAATGCTGGAAGCGGGGTCAG
GACATGCGGCGCGAGTCAAAGAACTACACAGTGCATCACAACAAGGCGAC
AAACGAGCAGGGGCAGCCGAAATCTGGACAACAGAACGGCGACGTCATGC
TGGAGGTAATCGAGAAGGTGTGGAACGACCAGGTAGAAGAGGCCGCCACC
AAGAAGATGAAGGAAACCCGCAAAAAGCAGAGGGAGGCGCTGGAGAGGAA
GGGAAGACAAAAAACCCGAAATTAGCGGAAAGGGTCATGGTACCGGCTAT
CCCCAAACGTGAGGACCTCGTCAACAAGGAGCTTAACGAGAATTTCCTCC
CTGCCCATTGGCTTTCGTGGTTGTTTTACGGACCGCTGGGCATGCACGCG
GACGAGGACATATCGTTTATGTCCTCCAACGGCCCTGACCTTGAAAGATT
AAGTGACGGAGACATCAGCGAAGACGATAACGACGGCGGCGGCGGCGAAT
TTGAAGACGAGGATGCGAGTGGATACGCATCTCCCGCAAGCTCCTTACAG
GGAAACTCCAGCGGCGACACCGGCGAGGGCACTCTAAGAATGGTTCCAAC
ATCTAACGCGGGAAAATCCAATGGAAACAAAAGGGCCAACAGCAGTGACG
GGCCGTCTGGGGGAGGGAGATCGGCCGTCAAGAGTAAGAGAGTCATGAAG
TGCTTGTCTAATGCCAACGAGGTCCTCGGTAGGAGGGCCACGAAGGAAAG
GAACCGGGAAGAGATAAAGAGAGCTCGGGGCAACCAAGAAGGGTTGCAGG
AACAGCTCAGGCTTGCCCAAGAGAGCTCCGCCGTTCTGCTGCAGGTGACG
CAGCAGATGACGACGGTTGGTGGTAGCGGTCCCGGTGCCGCTGGAGTCCC
CACCTCTGGGGGCGTGGACGTCACGGAAGGCGTACATGGTGGCGGCGCCG
GTGAGAGGGGCGACGTCGTTGACGTGGATCTCAGCGGAGGCACGAACGGA
AACCGGAGCGACAACGAAGCCTCCCAGGAGACTGCCTCCGTACGGGCAGG
CGCAGTTCAAGCCGCACGCAACCATGCCAGGGTTAGAGGAGGTCCAGGAT
CGGCAGCTACGACGGGTGCAGCTGCAAAGCATTTTGCCTCATGGAGGGCT
ACGTCCAGCGGACCCGCCGCTGCCGCTGCCGCTGCCGCCAACAATGCCGC
CAACGTTTTGGCGGTAGACAGTTCGGATAGTGACGCGGATGGTGGGGGCA
ATGACGAGTTTGTAATGGACATCGACGGTGAAGGATGTCGCAAGGAAGCT
TCCGTGGGCAGTTCCGGCAGGGGCTGTGGGGGTGGCAGCGAGGGAGTGGG
CGCTGCAGGCGGGCCGAAAAGGCCGCGGTGCAATAAACACCGCGTTCCGT
ACAAAATTATGGTTCTTCGAGGCAAGAGATATTGGGAGTGCGGCGAGGAC
TTCGACAATATGTGCGACCACTTCGAGTCTGCGGGCGGCGTGACGGTGGA
GGACGATTCCGGCGAGGCTTTGGATGCTTCAGCGGGTACCGCTGGTGCCG
CCGCGAACGGTGTTGGCGTTGTTTCCGTGAGCGCTGCAGGCGGCGGCATG
GGGACGGGGGACGGAACCGCCGCAGGGGGTGCGTCTGCTGCCGCGGGTGC
TTCTCATGCCGTCACAAACGGTGCTGGCTGAGTTGCTTCCGTGGGCGCTG
CAGGCGGCGGCATGGGTATGGGGGACGGAACCATGGCCGTTGGGGGTGTT
GCTGCCGCCGCGGGTACCCATCGAGCAAACACAAGAGCTCTTGCTTGGGA
AGCCATCACGAACCAATTCCCCAACGGTGGCCAGGTGGCGGGTGCAGCTG
CAGCATACATGGCAGCTTTCGCAGCCCAAAAACCAGCCAACTGACTCTAG
GTTGACGGCAACACGTACGCCGAGCACTTTTGTGCGAGTTGTGCGCGACG
TGTTTCCTCGGGCGGTGGTTTTGTCGAAGGAAAAAAAAATGTTGCCGCTA
TATTCGTGTACTTATGTTGAGCCGCGGCAATCGTCAGTGGCTTCGCTTGA
AACGCCTGCTGTGCGAAGTGTTCACGTATGAGTCAGGAGGTCGAGCGAGA
AGGAGAACATATATTCTCCCTCTCTTTTTTTTTTTTGGCAATGGCAAGGG
GATGGCTTCCACTGCACAGAATTACTGGTGGTCCAAAATACCTGAACACT
CCTTCTTCTCTGCATGGAGTACTGTTCAACGGTAACGTTTTCTCCAACGT
TGGACACTTTTGTTTTCGACCGAAATGTCGCGCAAGGCTGTTAGGATTTC
AGAGATGGGTAACCACCTCCTGCCTATGTAGTCTCTGCGGGAGAGGGTTC
CCCCTATTTTCTGGTTAGGAATGTCGAGGATTCAGTGCTTCCGACTCGTG
TCGGTACATTGCTTGCCAGTGGGTTTATGATTTGCTGTGGGAAGCTTGTT
GGTGATTGATGCACTTGTTATTGTGCACAGTATTGCAAATGAACCGGCGT
TTACCGGCTGGTAGGTAACGTCAACATTTCCGCAGTTGGGTACTTATGCC
GTATTCCAAAGGAAGGTTGATCCCATGTCGATGTTTCCTGA

protein sequence of EsuBft975_7a-0001

>EsuBft975_7 ID=EsuBft975_7|Name=EsuBft975_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=549bp
MLEAGSGHAARVKELHSASQQGDKRAGAAEIWTTERRRHAGGNREGVERP
GRRGRHQEDEGNPQKAEGGAGEEGKTKNPKLAERVMVPAIPKREDLVNKE
LNENFLPAHWLSWLFYGPLGMHADEDISFMSSNGPDLERLSDGDISEDDN
DGGGGEFEDEDASGYASPASSLQGNSSGDTGEGTLRMVPTSNAGKSNGNK
RANSSDGPSGGGRSAVKSKRVMKCLSNANEVLGRRATKERNREEIKRARG
NQEGLQEQLRLAQESSAVLLQVTQQMTTVGGSGPGAAGVPTSGGVDVTEG
VHGGGAGERGDVVDVDLSGGTNGNRSDNEASQETASVRAGAVQAARNHAR
VRGGPGSAATTGAAAKHFASWRATSSGPAAAAAAAANNAANVLAVDSSDS
DADGGGNDEFVMDIDGEGCRKEASVGSSGRGCGGGSEGVGAAGGPKRPRC
NKHRVPYKIMVLRGKRYWECGEDFDNMCDHFESAGGVTVEDDSGEALDAS
AGTAGAAANGVGVVSVSAAGGGMGTGDGTAAGGASAAAGASHAVTNGAG

mRNA from alignment at Scaffold_553:9815..13283+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft975_7a-0001 ID=EsuBft975_7a-0001|Name=EsuBft975_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3469bp|location=Sequence derived from alignment at Scaffold_553:9815..13283+ (Ectocarpus subulatus male Bft15b)
ATCATAGCCTCTTTGATCCGAAATCGGACAAATGCTGGAAGCGGGGTCAG
GACATGCGGCGCGAGTCAAAGAACTACACAGTGCATCACAACAAGTACGT
TTGATATCCCTGGGTTCTGTTTTTTGCGGTCATTTTTGAACCGGGTACAG
TCGACGCACGTCCTGCTGTGGTAATGTTACACGTGTATGAATGGGGGATG
TCCTGCGTTACCGGTTGCTGGTTGCTTTGCCTGTGGAACCTTGCTTTTAC
TTTGGCGGTGAAGTTGACACTCCTGGGGTTCGGCTCGTAGTGCTCAGGAG
CGACAGTAGACGCTGTTGCGTTTTTGTCATTTTTTTTCCCAACACTCTGG
GAGGCATGAGGTTTGTGTAATCCACAATAACACCGCCCTGTCATTGAAGA
TTACTCCTTGAAAAACTCTTTTTTCAGTGGCTTTGAAAATTGAACACACT
TCCTGCTCAAACTTTGTGGAGGTTCTCGGCTGCACCTGTGGTTGTTCGTT
GGGCAAGTGTCGGTGGCACCCTTGACTTAATACCCCCTCATTTCATGCTT
CTTCGGCTGTTTCATCCTCCAAGGTTGTACATATTTGTGAAGGGCGACAA
ACGAGCAGGGGCAGCCGAAATCTGGACAACAGAACGGCGACGTCATGCTG
GAGGTAATCGAGAAGGTGTGGAACGACCAGGTAGAAGAGGCCGCCACCAA
GAAGATGAAGGAAACCCGCAAAAAGCAGAGGGAGGCGCTGGAGAGGAAGG
GAAGACAAAAAACCCGAAATTAGCGGAAAGGGTCATGGTACCGGCTATCC
CCAAACGTGAGGACCTCGTCAACAAGGAGCTTAACGAGAATTTCCTCCCT
GCCCATTGGCTTTCGTGGTTGTTTTACGGACCGCTGGGCATGCACGCGGA
CGAGGACATATCGTTTATGTCCTCCAACGGCCCTGACCTTGAAAGATTAA
GTGACGGAGACATCAGCGAAGACGATAACGACGGCGGCGGCGGCGAATTT
GAAGACGAGGATGCGAGTGGATACGCATCTCCCGCAAGCTCCTTACAGGG
AAACTCCAGCGGCGACACCGGCGAGGGCACTCTAAGAATGGTTCCAACAT
CTAACGCGGGAAAATCCAATGGAAACAAAAGGGCCAACAGCAGTGACGGG
CCGTCTGGGGGAGGGAGATCGGCCGTCAAGAGTAAGAGAGTCATGAAGTG
CTTGTCTAATGCCAACGAGGTCCTCGGTAGGAGGGCCACGAAGGAAAGGA
ACCGGGAAGAGATAAAGAGAGCTCGGGGCAACCAAGAAGGGTTGCAGGAA
CAGCTCAGGCTTGCCCAAGAGAGCTCCGCCGTTCTGCTGCAGGTGACGCA
GCAGGTAGCAGGAATTGTCCGTACCATGGAGGAAGGGTCGGAAGCAGACC
GGAGAAAGGAAAAACTTGCCAACCTGGAAACGTTGGAGAAGCTGTATCGC
GATATGGGCAACGAGGCCAAGGCAAAAGAGTATCTTATGCAAAGGGTCGC
TATACTCGAGTCATAGATGACGACGGTTGGTGGTAGCGGTCCCGGTGCCG
CTGGAGTCCCCACCTCTGGGGGCGTGGACGTCACGGAAGGCGTACATGGT
GGCGGCGCCGGTGAGAGGGGCGACGTCGTTGACGTGGATCTCAGCGGAGG
CACGAACGGAAACCGGAGCGACAACGAAGCCTCCCAGGAGACTGCCTCCG
TACGGGCAGGCGCAGTTCAAGCCGCACGCAACCATGCCAGGGTTAGAGGA
GGTCCAGGATCGGCAGCTACGACGGGTGCAGCTGCAAAGCATTTTGCCTC
ATGGAGGGCTACGTCCAGCGGACCCGCCGCTGCCGCTGCCGCTGCCGCCA
ACAATGCCGCCAACGTTTTGGCGGTAGACAGTTCGGATAGTGACGCGGAT
GGTGGGGGCAATGACGAGTTTGTAATGGACATCGACGGTGAAGGATGTCG
CAAGGAAGCTTCCGTGGGCAGTTCCGGCAGGGGCTGTGGGGGTGGCAGCG
AGGGAGTGGGCGCTGCAGGCGGGCCGAAAAGGCCGCGGTGCAATAAACAC
CGCGTTCCGTACAAAATTATGGTTCTTCGAGTGAGTACAATCGTGGCGTT
GTTGTGTGGCGATAATAGGGTACCTGCGTGGAGGTTTGTGGTGCTCATCA
GGCGACGTGTTGGTCGTTCGTCCCAGAGTCCGGCCTGATCAGTTTCGTAA
CTTCGTTTTGGGCATCTGGGTGTATCGCAAACGCAAGAGCTCAACTGACC
TCGCCACGTGTTCCTCCCCCCCGCCCTCCCGAAGTACCGCCACCCCAGGG
CAAGAGATATTGGGAGTGCGGCGAGGACTTCGACAATATGTGCGACCACT
TCGAGTCTGCGGGCGGCGTGACGGTGGAGGACGATTCCGGCGAGGCTTTG
GATGCTTCAGCGGGTACCGCTGGTGCCGCCGCGAACGGTGTTGGCGTTGT
TTCCGTGAGCGCTGCAGGCGGCGGCATGGGGACGGGGGACGGAACCGCCG
CAGGGGGTGCGTCTGCTGCCGCGGGTGCTTCTCATGCCGTCACAAACGGT
GCTGGCTGAGTTGCTTCCGTGGGCGCTGCAGGCGGCGGCATGGGTATGGG
GGACGGAACCATGGCCGTTGGGGGTGTTGCTGCCGCCGCGGGTACCCATC
GAGCAAACACAAGAGCTCTTGCTTGGGAAGCCATCACGAACCAATTCCCC
AACGGTGGCCAGGTGGCGGGTGCAGCTGCAGCATACATGGCAGCTTTCGC
AGCCCAAAAACCAGCCAACTGACTCTAGGTTGACGGCAACACGTACGCCG
AGCACTTTTGTGCGAGTTGTGCGCGACGTGTTTCCTCGGGCGGTGGTTTT
GTCGAAGGAAAAAAAAATGTTGCCGCTATATTCGTGTACTTATGTTGAGC
CGCGGCAATCGTCAGTGGCTTCGCTTGAAACGCCTGCTGTGCGAAGTGTT
CACGTATGAGTCAGGAGGTCGAGCGAGAAGGAGAACATATATTCTCCCTC
TCTTTTTTTTTTTTGGCAATGGCAAGGGGATGGCTTCCACTGCACAGAAT
TACTGGTGGTCCAAAATACCTGAACACTCCTTCTTCTCTGCATGGAGTAC
TGTTCAACGGTAACGTTTTCTCCAACGTTGGACACTTTTGTTTTCGACCG
AAATGTCGCGCAAGGCTGTTAGGATTTCAGAGATGGGTAACCACCTCCTG
CCTATGTAGTCTCTGCGGGAGAGGGTTCCCCCTATTTTCTGGTTAGGAAT
GTCGAGGATTCAGTGCTTCCGACTCGTGTCGGTACATTGCTTGCCAGTGG
GTTTATGATTTGCTGTGGGAAGCTTGTTGGTGATTGATGCACTTGTTATT
GTGCACAGTATTGCAAATGAACCGGCGTTTACCGGCTGGTAGGTAACGTC
AACATTTCCGCAGTTGGGTACTTATGCCGTATTCCAAAGGAAGGTTGATC
CCATGTCGATGTTTCCTGA

Coding sequence (CDS) from alignment at Scaffold_553:9815..13283+

>EsuBft975_7a-0001 ID=EsuBft975_7a-0001|Name=EsuBft975_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1650bp|location=Sequence derived from alignment at Scaffold_553:9815..13283+ (Ectocarpus subulatus male Bft15b)
ATGCTGGAAGCGGGGTCAGGACATGCGGCGCGAGTCAAAGAACTACACAG
TGCATCACAACAAGGCGACAAACGAGCAGGGGCAGCCGAAATCTGGACAA
CAGAACGGCGACGTCATGCTGGAGGTAATCGAGAAGGTGTGGAACGACCA
GGTAGAAGAGGCCGCCACCAAGAAGATGAAGGAAACCCGCAAAAAGCAGA
GGGAGGCGCTGGAGAGGAAGGGAAGACAAAAAACCCGAAATTAGCGGAAA
GGGTCATGGTACCGGCTATCCCCAAACGTGAGGACCTCGTCAACAAGGAG
CTTAACGAGAATTTCCTCCCTGCCCATTGGCTTTCGTGGTTGTTTTACGG
ACCGCTGGGCATGCACGCGGACGAGGACATATCGTTTATGTCCTCCAACG
GCCCTGACCTTGAAAGATTAAGTGACGGAGACATCAGCGAAGACGATAAC
GACGGCGGCGGCGGCGAATTTGAAGACGAGGATGCGAGTGGATACGCATC
TCCCGCAAGCTCCTTACAGGGAAACTCCAGCGGCGACACCGGCGAGGGCA
CTCTAAGAATGGTTCCAACATCTAACGCGGGAAAATCCAATGGAAACAAA
AGGGCCAACAGCAGTGACGGGCCGTCTGGGGGAGGGAGATCGGCCGTCAA
GAGTAAGAGAGTCATGAAGTGCTTGTCTAATGCCAACGAGGTCCTCGGTA
GGAGGGCCACGAAGGAAAGGAACCGGGAAGAGATAAAGAGAGCTCGGGGC
AACCAAGAAGGGTTGCAGGAACAGCTCAGGCTTGCCCAAGAGAGCTCCGC
CGTTCTGCTGCAGGTGACGCAGCAGATGACGACGGTTGGTGGTAGCGGTC
CCGGTGCCGCTGGAGTCCCCACCTCTGGGGGCGTGGACGTCACGGAAGGC
GTACATGGTGGCGGCGCCGGTGAGAGGGGCGACGTCGTTGACGTGGATCT
CAGCGGAGGCACGAACGGAAACCGGAGCGACAACGAAGCCTCCCAGGAGA
CTGCCTCCGTACGGGCAGGCGCAGTTCAAGCCGCACGCAACCATGCCAGG
GTTAGAGGAGGTCCAGGATCGGCAGCTACGACGGGTGCAGCTGCAAAGCA
TTTTGCCTCATGGAGGGCTACGTCCAGCGGACCCGCCGCTGCCGCTGCCG
CTGCCGCCAACAATGCCGCCAACGTTTTGGCGGTAGACAGTTCGGATAGT
GACGCGGATGGTGGGGGCAATGACGAGTTTGTAATGGACATCGACGGTGA
AGGATGTCGCAAGGAAGCTTCCGTGGGCAGTTCCGGCAGGGGCTGTGGGG
GTGGCAGCGAGGGAGTGGGCGCTGCAGGCGGGCCGAAAAGGCCGCGGTGC
AATAAACACCGCGTTCCGTACAAAATTATGGTTCTTCGAGGCAAGAGATA
TTGGGAGTGCGGCGAGGACTTCGACAATATGTGCGACCACTTCGAGTCTG
CGGGCGGCGTGACGGTGGAGGACGATTCCGGCGAGGCTTTGGATGCTTCA
GCGGGTACCGCTGGTGCCGCCGCGAACGGTGTTGGCGTTGTTTCCGTGAG
CGCTGCAGGCGGCGGCATGGGGACGGGGGACGGAACCGCCGCAGGGGGTG
CGTCTGCTGCCGCGGGTGCTTCTCATGCCGTCACAAACGGTGCTGGCTGA