EsuBft975_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft975_4a-0001
Unique NameEsuBft975_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:50246..50958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft975_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length62
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft975_4aEsuBft975_4aEctocarpus subulatus male Bft15bgeneScaffold_553 50246..50958 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_4a-0001-exonEsuBft975_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 50246..50248 +
EsuBft975_4a-0001-exonagat-exon-46330Ectocarpus subulatus male Bft15bexonScaffold_553 50336..50958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_4a-0001-cdsEsuBft975_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 50246..50248 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_4a-0001-exonagat-three_prime_utr-23682Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 50816..50958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_4a-0001EsuBft975_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 50246..50815 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft975_4a-0001 ID=EsuBft975_4a-0001|Name=EsuBft975_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=626bp|location=Sequence derived from alignment at Scaffold_553:50246..50958+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATACTACACAACAAACCGCATCCGAATCGCATCAGCCAACCACGA
GATCTACTTGTCTGAAAACGGCCCCTCCAGGGGGGCTGCAGTGCCCACAC
CAGCAGACCCTCCCAAAAAAAAATCGAGGTCCGCGCCGTTCGGCAGCAGG
AGGCGCGCTGCGCGAAAGCTGAATCAAAACAAAACGAAGTTTGAAGAAAG
GACGGGGCAGTGTATGGTTGCCACGTCAGCAGAAGATAACACGCGGCGCG
CTATCGAACGCGGCAGCCTCCCCGTCGTAGAGAGAACGCTGGAGGAAACG
AAGGAGGAGTTGGTCAAAAATAAGAAAACTGTGGAAGAGAGCCAGGCTCA
ACCTCGTTGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGTTTTTTCA
GCAGCAGCAGCGGCGGCGGCAAGTGTCTGCGTGGCTTCACCGCCCGGCTG
CTGCCCGGGTGTGTCATGAGGCATGTGTTCTAGAGTGGGACCGCGCAATG
GTGTTGTGCTGTGCCACATAACAGGGCGCAAAGCACACAGGCGAGCCGCG
CCCTCGCGCGTGTGCGTCAGAGGGTCTTTTCGGGAGGTTCCGACGGTTTC
GTGCAATTTCATTGGTTGGTCGATTT
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protein sequence of EsuBft975_4a-0001

>EsuBft975_4 ID=EsuBft975_4|Name=EsuBft975_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MLYYTTNRIRIASANHEIYLSENGPSRGAAVPTPADPPKKKSRSAPFGSR
RRAARKLNQNKTKFEERTGQCMVATSAEDNTRRAIERGSLPVVERTLEET
KEELVKNKKTVEESQAQPRCRRRRRRRCCCCFFSSSSGGGKCLRGFTARL
LPGCVMRHVF
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mRNA from alignment at Scaffold_553:50246..50958+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft975_4a-0001 ID=EsuBft975_4a-0001|Name=EsuBft975_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=713bp|location=Sequence derived from alignment at Scaffold_553:50246..50958+ (Ectocarpus subulatus male Bft15b)
ATGGTTCTTTGGGCTCTTTGCTCCACGCCCAAGGCGACCTTTGCTCCTCT
TGAAAAAGCGACCCAATAGCCCTCTACCTTGGGTTTACAGCTATACTACA
CAACAAACCGCATCCGAATCGCATCAGCCAACCACGAGATCTACTTGTCT
GAAAACGGCCCCTCCAGGGGGGCTGCAGTGCCCACACCAGCAGACCCTCC
CAAAAAAAAATCGAGGTCCGCGCCGTTCGGCAGCAGGAGGCGCGCTGCGC
GAAAGCTGAATCAAAACAAAACGAAGTTTGAAGAAAGGACGGGGCAGTGT
ATGGTTGCCACGTCAGCAGAAGATAACACGCGGCGCGCTATCGAACGCGG
CAGCCTCCCCGTCGTAGAGAGAACGCTGGAGGAAACGAAGGAGGAGTTGG
TCAAAAATAAGAAAACTGTGGAAGAGAGCCAGGCTCAACCTCGTTGCCGC
CGCCGCCGCCGCCGCCGCTGCTGCTGCTGTTTTTTCAGCAGCAGCAGCGG
CGGCGGCAAGTGTCTGCGTGGCTTCACCGCCCGGCTGCTGCCCGGGTGTG
TCATGAGGCATGTGTTCTAGAGTGGGACCGCGCAATGGTGTTGTGCTGTG
CCACATAACAGGGCGCAAAGCACACAGGCGAGCCGCGCCCTCGCGCGTGT
GCGTCAGAGGGTCTTTTCGGGAGGTTCCGACGGTTTCGTGCAATTTCATT
GGTTGGTCGATTT
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Coding sequence (CDS) from alignment at Scaffold_553:50246..50958+

>EsuBft975_4a-0001 ID=EsuBft975_4a-0001|Name=EsuBft975_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_553:50246..50958+ (Ectocarpus subulatus male Bft15b)
ATGCTATACTACACAACAAACCGCATCCGAATCGCATCAGCCAACCACGA
GATCTACTTGTCTGAAAACGGCCCCTCCAGGGGGGCTGCAGTGCCCACAC
CAGCAGACCCTCCCAAAAAAAAATCGAGGTCCGCGCCGTTCGGCAGCAGG
AGGCGCGCTGCGCGAAAGCTGAATCAAAACAAAACGAAGTTTGAAGAAAG
GACGGGGCAGTGTATGGTTGCCACGTCAGCAGAAGATAACACGCGGCGCG
CTATCGAACGCGGCAGCCTCCCCGTCGTAGAGAGAACGCTGGAGGAAACG
AAGGAGGAGTTGGTCAAAAATAAGAAAACTGTGGAAGAGAGCCAGGCTCA
ACCTCGTTGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGTTTTTTCA
GCAGCAGCAGCGGCGGCGGCAAGTGTCTGCGTGGCTTCACCGCCCGGCTG
CTGCCCGGGTGTGTCATGAGGCATGTGTTCTAG
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