EsuBft975_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft975_2a-0001
Unique NameEsuBft975_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:63366..63965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4096.XP_009761102.1
ProteomeIdEsuBft975_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length60
Hectar predicted targeting categoryother localisation
Evalue4.68e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050347,GO:0051186,GO:0051188,GO:0061458,GO:0071704,GO:1901576,GO:1901661,GO:1901663
DescriptionRibonuclease H protein
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft975_2aEsuBft975_2aEctocarpus subulatus male Bft15bgeneScaffold_553 63366..63965 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_2a-0001-exonEsuBft975_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 63366..63965 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_2a-0001-exonagat-three_prime_utr-23681Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 63366..63371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_2a-0001-cdsEsuBft975_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 63372..63965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_2a-0001EsuBft975_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 63372..63965 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft975_2a-0001 ID=EsuBft975_2a-0001|Name=EsuBft975_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=600bp|location=Sequence derived from alignment at Scaffold_553:63366..63965- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGAGGTGCACACGAGGGCA
GAGAGGCTGGTACCCGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTA
GAGAGATTAAGGCGGCCCAGCAGCAACTTCGTGGGGCCTCGAAGAACAGC
GCCTTCGAGGCGACCCTGGAGGCGATGCTCAAGGCGGCGCGGAAGAAGCG
CAGCATCGCGAGGTGGAGAGCACTGGATACGTTCTTCGAAGGCTATGCAC
GGCAGCTCGAAAAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGG
CACCTGAAGATGATCGACGTCGAAGGCAAGAGGTCGTTCACCTCTCAGAA
CATCAAGGACGAGGACGGCAAGGTCCTTCGGTACCCCACGTTTATTCGCC
AACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACC
ATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCC
ACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAA
TGGCCAACAGAAAGGTCGTCGGGCCGGACGAACTACCGGCTTAGCTGATC
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protein sequence of EsuBft975_2a-0001

>EsuBft975_2 ID=EsuBft975_2|Name=EsuBft975_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=197bp
MSAAAETAPLARCTRGQRGWYPSEAQHEISEASREIKAAQQQLRGASKNS
AFEATLEAMLKAARKKRSIARWRALDTFFEGYARQLEKKSREGDQAGFYR
HLKMIDVEGKRSFTSQNIKDEDGKVLRYPTFIRQRWARWFHKLLNTKSPT
IDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKVVGPDELPA
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mRNA from alignment at Scaffold_553:63366..63965-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft975_2a-0001 ID=EsuBft975_2a-0001|Name=EsuBft975_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=600bp|location=Sequence derived from alignment at Scaffold_553:63366..63965- (Ectocarpus subulatus male Bft15b)
ATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGAGGTGCACACGAGGGCA
GAGAGGCTGGTACCCGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTA
GAGAGATTAAGGCGGCCCAGCAGCAACTTCGTGGGGCCTCGAAGAACAGC
GCCTTCGAGGCGACCCTGGAGGCGATGCTCAAGGCGGCGCGGAAGAAGCG
CAGCATCGCGAGGTGGAGAGCACTGGATACGTTCTTCGAAGGCTATGCAC
GGCAGCTCGAAAAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGG
CACCTGAAGATGATCGACGTCGAAGGCAAGAGGTCGTTCACCTCTCAGAA
CATCAAGGACGAGGACGGCAAGGTCCTTCGGTACCCCACGTTTATTCGCC
AACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACC
ATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCC
ACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAA
TGGCCAACAGAAAGGTCGTCGGGCCGGACGAACTACCGGCTTAGCTGATC
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Coding sequence (CDS) from alignment at Scaffold_553:63366..63965-

>EsuBft975_2a-0001 ID=EsuBft975_2a-0001|Name=EsuBft975_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=594bp|location=Sequence derived from alignment at Scaffold_553:63366..63965- (Ectocarpus subulatus male Bft15b)
ATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGAGGTGCACACGAGGGCA
GAGAGGCTGGTACCCGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTA
GAGAGATTAAGGCGGCCCAGCAGCAACTTCGTGGGGCCTCGAAGAACAGC
GCCTTCGAGGCGACCCTGGAGGCGATGCTCAAGGCGGCGCGGAAGAAGCG
CAGCATCGCGAGGTGGAGAGCACTGGATACGTTCTTCGAAGGCTATGCAC
GGCAGCTCGAAAAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGG
CACCTGAAGATGATCGACGTCGAAGGCAAGAGGTCGTTCACCTCTCAGAA
CATCAAGGACGAGGACGGCAAGGTCCTTCGGTACCCCACGTTTATTCGCC
AACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACC
ATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCC
ACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAA
TGGCCAACAGAAAGGTCGTCGGGCCGGACGAACTACCGGCTTAG
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