EsuBft971_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft971_5a-0001
Unique Name	EsuBft971_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_301	contig	Scaffold_301:86143..93277 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	56107.Cylst_5207
ProteomeId	EsuBft971_5
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	1117\|Cyanobacteria
Length	1635
Hectar predicted targeting category	other localisation
Evalue	2.19e-14
EggNOG OGs	2EUDG@1\|root,30I2H@2\|Bacteria,1GKHJ@1117\|Cyanobacteria,1HQ93@1161\|Nostocales
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft971_5a	EsuBft971_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_301 86143..93277 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_5a-0001	EsuBft971_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_301 86143..91647 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_5a-0001-exon	agat-exon-83651	Ectocarpus subulatus male Bft15b	exon	Scaffold_301 86143..86865 -
EsuBft971_5a-0001-exon	agat-exon-83653	Ectocarpus subulatus male Bft15b	exon	Scaffold_301 90497..90966 -
EsuBft971_5a-0001-exon	agat-exon-83652	Ectocarpus subulatus male Bft15b	exon	Scaffold_301 91551..91721 -
EsuBft971_5a-0001-exon	EsuBft971_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_301 93007..93277 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_5a-0001-cds	EsuBft971_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_301 86143..86865 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_5a-0001-exon	agat-five_prime_utr-15394	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_301 91648..91721 -
EsuBft971_5a-0001-exon	agat-five_prime_utr-15395	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_301 93007..93277 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_301:86143..93277-
coding sequence from alignment at Scaffold_301:86143..93277-

spliced messenger RNA

>EsuBft971_5a-0001 ID=EsuBft971_5a-0001|Name=EsuBft971_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1635bp|location=Sequence derived from alignment at Scaffold_301:86143..93277- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTTTCGAGGCTTCTTCTTGTTTGCTAGGCAAGAGAAGTTAAGTCTTCTT
GGGGTAACCGGGACCCGACCGGCTGGGGGCGAGTAGAACCACCTTTTTTC
CAACAATCTTCTGTGCGTGTTGCGGGTGCGCCACTTCCGCCACGCATTGC
CAGAAGTTTCGAGTTCGATAGACAGTGCGCATCGTTTCTCGGCCCACCCA
CCGTTTTTCCTTTTCCGTACTCCGGAAGAAAATTAGATGAGTTGTTGTTG
TTGTTGACTTCACATTAAACCGTGACGTAAGTAGAATTATCGAAAAAAAA
TTGGAACTTTTCATAGCGGGCCGGTACAGCAACCAAGCAAATATCATGAA
CAACAACATAAAGATCGTGATCGACGCACGCAGCGGAGACGTCGCAGTCA
AATCTATGATCAAGAACATCATACCGAACCTAAGCGACAGCGGCAAGAAC
CGAGCTCTGCAGAGATGGATTGATGCGAGGAAACTCGCCGCTCGGAAAAG
ACGGAAGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGA
CCGCAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAGAGGGCGAC
CTATCGTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAA
CCCCATCGGTCACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCG
GCTGTGATGTGATAGGACTTCAGGAGACCCGACGAGCGGGGCAAGGCTCA
ATTGCACACGACGGGTACGTGATCATTTGGAGTGGCGCCCGTGCTGGCAC
CAAGGACAAGAGGGGCGTACACGGTGTGGGCATAGCGATCAAGGAGGCCA
TGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCG
AGGCTGATGAAGGCTTTGAATAGACGGGTGGAATACAAACCAGAGTTATT
CAAGGTGAAGGAAAGTTCCGTCAGAGATGCTCTTGCTTCTATCGTCGGTG
GAGAAACAGAGAAAGAAACACCCGTAGGTTTCATCGACGTGCTCAGTGAT
ACCGAGGTGATCGAGGTGAAGTACTATAAGCAGTGGAGGGGTGCACTCGG
GCAGGTGCTCGCATACCAAGCATACTACCCTGGGCTGGCTAAGCGTGTGC
ATCTTTTTGCACAAACTGGCAAGAAGGATACCGAGAAGTATGTAGAGTCG
ACGAAGTCGGTTTGTGATACGCATGCGGTAAAGGTTACGTTCGAAGAGTG
TGTCGTTGAAGTACAATCGCTTGATCTGGACAAGGATGATATCAACACCG
TTTTTGGTGATGAAATTAAGACACAGCACCGTGACAAAAGGGCTCGTGTT
AAAAACGACTCGGATCAGTTGGCGGGGTGGGGTGTGCGCAAGCGACTTGC
CGTGGAAGTGGATGAGCCATCATGGTTCGAACACGCATCGGTCGATCTGA
AGAGGGCCTACGCTTCGATGGAAGTGAGGAAGATGATAGCGTTCGGAGAG
ATTGATATCTTGAAATCTTGTAAAGAGGAGTTGGAGTCGATAGGGTGTTT
CGGCGAACTCGACCGACATGAGTTCGCGGACGGGATCAGGCGCATCCAGC
GGCGGCACGCGAGTTCCGTCGCCCTTTTATTGTAG

protein sequence of EsuBft971_5a-0001

>EsuBft971_5 ID=EsuBft971_5|Name=EsuBft971_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=429bp
MNNNIKIVIDARSGDVAVKSMIKNIIPNLSDSGKNRALQRWIDARKLAAR
KRRKKAHPQREVDRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSG
RNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARA
GTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKALNRRVEYKPE
LFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGA
LGQVLAYQAYYPGLAKRVHLFAQTGKKDTEKYVESTKSVCDTHAVKVTFE
ECVVEVQSLDLDKDDINTVFGDEIKTQHRDKRARVKNDSDQLAGWGVRKR
LAVEVDEPSWFEHASVDLKRAYASMEVRKMIAFGEIDILKSCKEELESIG
CFGELDRHEFADGIRRIQRRHASSVALLL

mRNA from alignment at Scaffold_301:86143..93277-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft971_5a-0001 ID=EsuBft971_5a-0001|Name=EsuBft971_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7135bp|location=Sequence derived from alignment at Scaffold_301:86143..93277- (Ectocarpus subulatus male Bft15b)
TTTTTCGAGGCTTCTTCTTGTTTGCTAGGCAAGAGAAGTTAAGTCTTCTT
GGGGTAACCGGGACCCGACCGGCTGGGGGCGAGTAGAACCACCTTTTTTC
CAACAATCTTCTGTGCGTGTTGCGGGTGCGCCACTTCCGCCACGCATTGC
CAGAAGTTTCGAGTTCGATAGACAGTGCGCATCGTTTCTCGGCCCACCCA
CCGTTTTTCCTTTTCCGTACTCCGGAAGAAAATTAGATGAGTTGTTGTTG
TTGTTGACTTCACATTAAACCGTATGCCAGTTGCTAAATGCCAAAATCTA
GCAAAGACTCTCGGCCCGTGGTCACGAAAGTGCTGGAGCCATCTGAGGAT
CTAAAGAACACGCACACGTAGCAAGAAAAAGGTGTACAAGAGCCCGAAGA
GGTACTACTACACCTATATATAATCCCTGCAGCACCGTACGCGTGCCCAA
AACTGAACTACACGTCCGTCTCACCGTTCGACTACNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGACCCCA
TCAGTGCCGACCCAACTACACCACCACGCGCATGCCTCGCGGCGGATATG
CGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTAGCCCTG
CTCGCCAGAAAGACCCCCCCCTTCACTACAACCCATGTCTAAGCAAAAGC
TTGTCGAGGAGCGAGGGGAAGAAGGAAGAGTGTGGAAAAGAGGTTTCGTC
CTCGACAGACGATGGGCAGTTTCAACCTTGACTATGTATGAAGGTGTTCT
CCACAGGTGACGTAAGTAGAATTATCGAAAAAAAATTGGAACTTTTCATA
GCGGGCCGGTACAGCAACCAAGCAAATATCATGAACAACAACATAAAGAT
CGTGATCGACGCACGCAGCGGAGACGTCGCAGTCAAATCTATGATCAAGA
ACATCATACCGAACCTAAGCGACAGCGGTATTCTCAGAACAGTGTGCACC
GCGTCCTCGGGGATTACAACGGCCCGAAAACGTCCACGCGTTTCATGAAT
GGGCGCCTCGCGTGTGCCGCGACGCTGGAGCTGTGCTACGAGATTCTCGA
TAAAATGAGCGGGCCTCCGTGGCGCAAATGGCGTGAGGAGTCGGGGAATG
CGTTCAAAGAGGCGCTGCGCGAGCGTGTCGAGAGCGTTCGGTCCTCAGGC
CAAACAGAACAACTCCAACTCCAGCCACCGCCACAGCCACAGCCACCGCA
GCAAGTCGAGCAAGTAGTCGACACAATGCTCCATACATCAATGCTCACAA
AAGCATTGCGCGCGATTGGCATCAACGGTTGTGTTAGGGTGGACCGAACC
ACTGGGAGGATGTCCATGATTGATGCTGTGAGGCTGATGCGGCCACGTTT
ATGCCCCAGTCGCGCTGCAAATATGATAAGTCTAGGCGTCGTTTTGCCAA
AAATGACCGTGTTCCTTCGATCAGATCACGCACCACATACATCAAAATAA
ACGTGAGCGGGGCAACGACACGGGGAGGGAGTGCTGCACCCTCCTCGTCA
AAACACCACAGGCAAGAACCGAGCTCTGCAGAGATGGATTGATGCGAGGA
AACTCGCCGCTCGGAAAAGACGGAAGAAAGCACACCCGCAACGCGAGGTG
GACCGAGAGAGACACGAGACCGCAGCGGCCGTCAAGGCAGCTGCGAAGAA
GAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTCAACGTACGCACGC
TCGCCTACAGCGGTAGGAACCCCATCGGTCACAACGTGATGACGGTCATG
CAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACTTCAGGAGACCCG
ACGAGCGGGGCAAGGCTCAATTGCACACGACGGGTACGTGATCATTTGGA
GTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTACACGGTGTGGGC
ATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGAC
GGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCC
GCACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTC
CGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGC
TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNGTGTCCGAGGGCTCTTTTCTCGAACAGTAGGTGCGAT
ACCTGTTCTTTTCTTTCTTTCGATCATTTTGTTTTCTTTTTCCGAGTGGT
TTGTATCCTATTTTTGTTTTTTGTTTTCTCGCGGCGTCGTATGTGCCGGG
TTTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATAGAGCTAATGTGA
GAAACAACAACAACAACAAACCGGTTACTGACTTGAAGACCCTGATAGAG
GTCATTTGGATTTTAATGCCCCGTAGCTCCTCCAGAGAGTTCCGTAGTCA
ATCTGCGGAGACCGTGTGTCGTGAAATGGGTGGTGACCTTGATGTTCTTC
GAGATATCGAGAAAAACAATTCGGCATGATTGTCTATCGAAGGGGGGGAG
GTGATCCAACAGGCTTTGAATAGACGGGTGGAATACAAACCAGAGTTATT
CAAGGTGAAGGAAAGTTCCGTCAGAGATGCTCTTGCTTCTATCGTCGGTG
GAGAAACAGAGAAAGAAACACCCGTAGGTTTCATCGACGTGCTCAGTGAT
ACCGAGGTGATCGAGGTGAAGTACTATAAGCAGTGGAGGGGTGCACTCGG
GCAGGTGCTCGCATACCAAGCATACTACCCTGGGCTGGCTAAGCGTGTGC
ATCTTTTTGCACAAACTGGCAAGAAGGATACCGAGAAGTATGTAGAGTCG
ACGAAGTCGGTTTGTGATACGCATGCGGTAAAGGTTACGTTCGAAGAGTG
TGTCGTTGAAGTACAATCGCTTGATCTGGACAAGGATGATATCAACACCG
TTTTTGGTGATGAAATTAAGACACAGCACCGTGACAAAAGGGCTCGTGTT
AAAAACGACTCGGATCAGTTGGCGGGGTGGGGTGTGCGCAAGCGACTTGC
CGTGGAAGTGGATGAGCCATCATGGTTCGAACACGCATCGGTCGATCTGA
AGAGGGCCTACGCTTCGATGGAAGTGAGGAAGATGATAGCGTTCGGAGAG
ATTGATATCTTGAAATCTTGTAAAGAGGAGTTGGAGTCGATAGGGTGTTT
CGGCGAACTCGACCGACATGAGTTCGCGGACGGGATCAGGCGCATCCAGC
GGCGGCACGCGAGTTCCGTCGCCCTTTTATTGTAG

Coding sequence (CDS) from alignment at Scaffold_301:86143..93277-

>EsuBft971_5a-0001 ID=EsuBft971_5a-0001|Name=EsuBft971_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1290bp|location=Sequence derived from alignment at Scaffold_301:86143..93277- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACATAAAGATCGTGATCGACGCACGCAGCGGAGACGTCGC
AGTCAAATCTATGATCAAGAACATCATACCGAACCTAAGCGACAGCGGCA
AGAACCGAGCTCTGCAGAGATGGATTGATGCGAGGAAACTCGCCGCTCGG
AAAAGACGGAAGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACA
CGAGACCGCAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAGAGG
GCGACCTATCGTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGCGGT
AGGAACCCCATCGGTCACAACGTGATGACGGTCATGCAGATTTGTTCCGC
GACCGGCTGTGATGTGATAGGACTTCAGGAGACCCGACGAGCGGGGCAAG
GCTCAATTGCACACGACGGGTACGTGATCATTTGGAGTGGCGCCCGTGCT
GGCACCAAGGACAAGAGGGGCGTACACGGTGTGGGCATAGCGATCAAGGA
GGCCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTA
GCCCGAGGCTGATGAAGGCTTTGAATAGACGGGTGGAATACAAACCAGAG
TTATTCAAGGTGAAGGAAAGTTCCGTCAGAGATGCTCTTGCTTCTATCGT
CGGTGGAGAAACAGAGAAAGAAACACCCGTAGGTTTCATCGACGTGCTCA
GTGATACCGAGGTGATCGAGGTGAAGTACTATAAGCAGTGGAGGGGTGCA
CTCGGGCAGGTGCTCGCATACCAAGCATACTACCCTGGGCTGGCTAAGCG
TGTGCATCTTTTTGCACAAACTGGCAAGAAGGATACCGAGAAGTATGTAG
AGTCGACGAAGTCGGTTTGTGATACGCATGCGGTAAAGGTTACGTTCGAA
GAGTGTGTCGTTGAAGTACAATCGCTTGATCTGGACAAGGATGATATCAA
CACCGTTTTTGGTGATGAAATTAAGACACAGCACCGTGACAAAAGGGCTC
GTGTTAAAAACGACTCGGATCAGTTGGCGGGGTGGGGTGTGCGCAAGCGA
CTTGCCGTGGAAGTGGATGAGCCATCATGGTTCGAACACGCATCGGTCGA
TCTGAAGAGGGCCTACGCTTCGATGGAAGTGAGGAAGATGATAGCGTTCG
GAGAGATTGATATCTTGAAATCTTGTAAAGAGGAGTTGGAGTCGATAGGG
TGTTTCGGCGAACTCGACCGACATGAGTTCGCGGACGGGATCAGGCGCAT
CCAGCGGCGGCACGCGAGTTCCGTCGCCCTTTTATTGTAG