EsuBft971_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft971_4a-0001
Unique NameEsuBft971_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_301contigScaffold_301:96304..99377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHQ8
ProteomeIdEsuBft971_4
Protein domainsIPR003368
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR011050
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteleucine-rich repeat-containing protein ddb [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length2367
Hectar predicted targeting categoryother localisation
Evalue1.77e-142
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft971_4aEsuBft971_4aEctocarpus subulatus male Bft15bgeneScaffold_301 96304..99377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_4a-0001EsuBft971_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_301 96304..99377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_4a-0001-exonagat-exon-83647Ectocarpus subulatus male Bft15bexonScaffold_301 96304..97464 -
EsuBft971_4a-0001-exonagat-exon-83646Ectocarpus subulatus male Bft15bexonScaffold_301 97631..97893 -
EsuBft971_4a-0001-exonagat-exon-83649Ectocarpus subulatus male Bft15bexonScaffold_301 98036..98367 -
EsuBft971_4a-0001-exonagat-exon-83648Ectocarpus subulatus male Bft15bexonScaffold_301 98562..98737 -
EsuBft971_4a-0001-exonagat-exon-83650Ectocarpus subulatus male Bft15bexonScaffold_301 98807..99232 -
EsuBft971_4a-0001-exonEsuBft971_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_301 99369..99377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_4a-0001-cdsEsuBft971_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_301 96304..97464 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft971_4a-0001 ID=EsuBft971_4a-0001|Name=EsuBft971_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2367bp|location=Sequence derived from alignment at Scaffold_301:96304..99377- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAGTTCAACTCCAACTTGGGAGGTGCAATCTTCGCGTATTTGTC
GACCGTGTCCTGGGATGGCGATGTCACCCAGTTCAGCCCAAACTCCGCTT
ACGATGATGGAGGTGCAATCTACGCGTATTCTTCGACCGTGTCCTGGGAT
GGCGACGGCACCCAGTTCAGCTCCAACTCCGCTAGCTTTTGTGGAGGTGC
AATCTACGTGATGAGTACTTCCGAATTATCCGACGTCACCGACGCGGTAT
TCATCAACAATCGTGCAGGAAACGGGGGGGCGGTGTATATTTACGCTGGA
GAATTTCAAGACAGGCCTGCTACAATTTCGGGGTGCAATTTCTCGAACAA
CGTGGCGGAGGAGGCCGGCGGGGCTGTGAACACCTTGGCCGTAAGCAATT
TTTCTCTTCTTGTCATTTTGAGGGCAACTCGGCAGCTTCTGATTGCACCA
TATACAACCGGTCGCCACCAATCCGCTTTGCCAGATGTCGGCGGAGCTAT
GAGGCCCGGTGGTGACGCGACTGTCAGCGACTGTGAATTCCTCGACAACA
TCGCTTACAGCCGTGGACTCGCTGTTGATGTGGTCGAGTCTGGGAATATC
AACAACTCAAGATGGTCACAGTCACAGTCCACCTTTTCCGCCTTAAAAAT
GCAGGAAGACCCCAATGTACGCTTTGAGACAGTGTGCCTCGAATGTCCTG
CTTGGGACGAGTGCTTCGAATGCACCATCGCGGACGGTACCGTCACGCCG
ACATGCGAGGTCCCATTGGAGCACACTGCGGCCGACGAAGATGGATTGAC
GTTGGAAACGCTCAAGATTGATGAAGGCTACTGGCGTGCAACTACCGAAA
GCGTCATCATCCTGGCGAGTTACAATGCGAATGCCTGCGCAGGGGGAAAA
ACGGGAGCGGACAGCTTTTGTGCCTCAGGATACCAGGGAACATATTGCGC
AGTGTGCAAAACCGACTATTCTCCATCGCTCGCTCACATTTGCACGCATT
GCTCGAGCTCAAGACGCCAAGGACTCATGTGCATCGCTGCCATCGCCGTG
ATTGTCACGGTCTTGGCTTTTGTGGCAATTTTCCAGTACATGTTGTCGAC
GGAGCATGAAGAGGGGATCTTGTGGTGCTTCCGTCGCAGGGTACTTGGAG
CGGTTCCCGTCCAGTCGTTGAAAATCATCGTCGTCGTGTGGCAGATTTTG
ACCCAGTTTGCTGACACGGCCAATGTCACCTATCCTGGCTTGTACCAAGA
CTTTCTTAGCGCGATCGACGTGATCAACTTCGACATCGGTTCCGTGCTCG
CGGTCGGGTGCTTGTGGTACGAGGTGGACTTCCACGACCGACTTCTCGTC
AATACCATAGGACCGTTGGTTGTTGCTGGATTTTTGGCGATGACGTACGG
GATCGTGTTGCGTAGGTACAGCGCATCCGGCGGCACTGGTGGAGTAGAAA
AGATTCGCCACAAACATCAGACGGCCCTACTGTTCTTGACGTTCCTGGTG
TATTCCTCAGTTTCATCAACGGTGTTCCAAACCTTCGCTTGCGAGACACT
TGATGACGACGTCGAATACCTTCGGGCGGACTACCGTATTCATTGCACAG
ATGCTAAGCACAAGGCCTTTGAAGTGTACGCAGCGATCATGATTGTTGTA
TACCCGGTGGGAATCCCCCTGTTTTATGCTTTCCTGTTGTTTCAACATCA
CCACATTCTGGCCGACGCTGGTGCGGACAAGACAGTAGCTCTGTCGATTT
CCGGGCTGTGGGAGCCGTACAGGCCCGAGCGGTTCTATTATGAAGAAGTC
GAGTGCGGACGCCGTGTCAACCTGACGGGTGTAGTCGTCTTTATCTTTCC
GAACGATGCGGCCCAAATTGCGATCACCATGCTAATTACTTCATATTTTT
CGTTGCTGTTCGAAATATTGTCGCCGTACGGGTCTGAGTCCGACATGTGG
CTTTCGCGGGGGGGTCATGTAATTGTGTTCCTCAGTATCTTTGATTTGGT
GCTGCTGAAAGTGGATGTGTCTGGTGAGAGCGACCAAAGCCAGGCTGTAT
TTTCCGGAGTGTTGTTGGCAGGTCATGTGTTGATGATTCTTGTCATCGTT
GTCGAGGTGGTTGGCATCTGTTACGCTTCAGGGATGAAGCGAGTTGTCGG
AGCAGCGTCGTCATCTGAGAGTTCGCCGGGGTTGAGGCCACGCCCAGGAT
CGGATGATCCTGCATTTGAGAGCGTTCCCCGCATCGTGGCCGTCGTTCAT
GCGGCGAAGTTCAGTGTCAGAAGAGCCCGGACCGACTCGGAGAATCGCTG
GGATAATGATCGTAAACATCCACAGAGATACCCCTCCTCCAGCCTAGTGT
CTGTGGTATTGATATAA
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protein sequence of EsuBft971_4a-0001

>EsuBft971_4 ID=EsuBft971_4|Name=EsuBft971_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=788bp
MRQFNSNLGGAIFAYLSTVSWDGDVTQFSPNSAYDDGGAIYAYSSTVSWD
GDGTQFSSNSASFCGGAIYVMSTSELSDVTDAVFINNRAGNGGAVYIYAG
EFQDRPATISGCNFSNNVAEEAGGAVNTLAVSNFSLLVILRATRQLLIAP
YTTGRHQSALPDVGGAMRPGGDATVSDCEFLDNIAYSRGLAVDVVESGNI
NNSRWSQSQSTFSALKMQEDPNVRFETVCLECPAWDECFECTIADGTVTP
TCEVPLEHTAADEDGLTLETLKIDEGYWRATTESVIILASYNANACAGGK
TGADSFCASGYQGTYCAVCKTDYSPSLAHICTHCSSSRRQGLMCIAAIAV
IVTVLAFVAIFQYMLSTEHEEGILWCFRRRVLGAVPVQSLKIIVVVWQIL
TQFADTANVTYPGLYQDFLSAIDVINFDIGSVLAVGCLWYEVDFHDRLLV
NTIGPLVVAGFLAMTYGIVLRRYSASGGTGGVEKIRHKHQTALLFLTFLV
YSSVSSTVFQTFACETLDDDVEYLRADYRIHCTDAKHKAFEVYAAIMIVV
YPVGIPLFYAFLLFQHHHILADAGADKTVALSISGLWEPYRPERFYYEEV
ECGRRVNLTGVVVFIFPNDAAQIAITMLITSYFSLLFEILSPYGSESDMW
LSRGGHVIVFLSIFDLVLLKVDVSGESDQSQAVFSGVLLAGHVLMILVIV
VEVVGICYASGMKRVVGAASSSESSPGLRPRPGSDDPAFESVPRIVAVVH
AAKFSVRRARTDSENRWDNDRKHPQRYPSSSLVSVVLI
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mRNA from alignment at Scaffold_301:96304..99377-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft971_4a-0001 ID=EsuBft971_4a-0001|Name=EsuBft971_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3074bp|location=Sequence derived from alignment at Scaffold_301:96304..99377- (Ectocarpus subulatus male Bft15b)
ATGCGCCAGGTGCAATCTACGCGTCTTCTTTGACCGTGTCCTGGGATGGC
GACGGCACCCAGTTCAGCTCCAACTCCGTTAACTCTTCTGAGGTGCAATC
TTCGCGTATTTGTCGACCGTGTCCTGGGATGGCGACGTCACCCAGTTCAA
CTCCAACTTGGGAGGTGCAATCTTCGCGTATTTGTCGACCGTGTCCTGGG
ATGGCGATGTCACCCAGTTCAGCCCAAACTCCGCTTACGATGATGGAGGT
GCAATCTACGCGTATTCTTCGACCGTGTCCTGGGATGGCGACGGCACCCA
GTTCAGCTCCAACTCCGCTAGCTTTTGTGGAGGTGCAATCTACGTGATGA
GTACTTCCGAATTATCCGACGTCACCGACGCGGTATTCATCAACAATCGT
GCAGGAAACGGGGGGGCGGTGTATATTTACGCTGGAGAATTTCAAGACAG
GCCTGCTACAATTTCGGGGTGCAATTTCTCGAACAACGTGGCGGAGGAGG
CCGGCGGGGCTGTGAACACCTTGGCCGTAAGCAATTTTTCTCTTCTTGTC
ATTTTGAGGGCAACTCGGCAGGTGAGGGTACCAAGCTATGAGCATTCGTT
TTTTTGCAGATGTTAAGTTCTTGGGAGGGAAACGCGTTAGCTTCTGATTG
CACCATATACAACCGGTCGCCACCAATCCGCTTTGCCAGATGTCGGCGGA
GCTATGAGGCCCGGTGGTGACGCGACTGTCAGCGACTGTGAATTCCTCGA
CAACATCGCTTACAGCCGTGGACTCGCTGTTGATGTGGTCGAGTCTGGGA
ATATCAACAACTCAAGGTTCAACGGAAATTAGCTGTCCTGCGGGAGTGAT
TCGTTTCGAAGCGATACGGAGCAGGTGTGTTCGGCGGTAGTGATTTGCTG
GTGTTTCCTGCATCTTTGTTTCTTCTCCTAGGTGTATCGTGACACATGCC
TCTCGACCCTGTGGAGACTAGCCCGAGGCTTCGTCTGCCACGTATTTGCT
TCACCACCAGATGGTCACAGTCACAGTCCACCTTTTCCGCCTTAAAAATG
CAGGAAGACCCCAATGTACGCTTTGAGACAGTGTGCCTCGAATGTCCTGC
TTGGGACGAGTGCTTCGAATGCACCATCGCGGACGGTACCGTCACGCCGA
CATGCGAGGTCCCATTGGAGCACACTGCGGCCGACGAAGATGGATTGACG
TTGGAAACGCTCAAGATTGATGAAGGCTACTGGCGTGCAACTACCGAAAG
CGTCATCATCCTGGCGAGTTACAATGCGAATGCCTGCGCAGGGGGAAAAA
CGGGAGCGGACAGCTTTTGTGCCTCAGGATACCAGGGAACATGTGAGCGA
GAAGTGGAAGATAGAGACGTACGAGCTTGCTTGTGATGATTCTCGGAAGG
TGTCAGAAACCTTGTTTGCGTTTTTGCGCGTTTCTCACCCGTACCCTTGT
TACCGCGTGCGTTTGCCCATTTCTACCTTTGCAGATTGCGCAGTGTGCAA
AACCGACTATTCTCCATCGCTCGCTCACATTTGCACGCATTGCTCGAGCT
CAAGACGCCAAGGACTCATGTGCATCGCTGCCATCGCCGTGATTGTCACG
GTCTTGGCTTTTGTGGCAATTTTCCAGTACATGTTGTCGACGGAGCATGA
AGAGGGGATCTTGTGGTGCTTCCGTCGCAGGGTACTTGGAGCGGTTCCCG
TCCAGTCGTTGAAAATCATCGTCGTCGTGTGGCAGATTTTGACCCAGGTG
CGCCCCCATTGTACACAATCGGTTGTTGTAGAGCGAGGAAGCTCGATAGA
GCACTGAGCGAAAGGACGGGTACACACACGTTTGGATATTAGCGAATCGA
GTCGGGGGCTTGACCGCCATGTCCTACCTCCACCTGAACGAAAAATGCCT
TTTTCCCGCGCAGTTTGCTGACACGGCCAATGTCACCTATCCTGGCTTGT
ACCAAGACTTTCTTAGCGCGATCGACGTGATCAACTTCGACATCGGTTCC
GTGCTCGCGGTCGGGTGCTTGTGGTACGAGGTGGACTTCCACGACCGACT
TCTCGTCAATACCATAGGACCGTTGGTTGTTGCTGGATTTTTGGCGATGA
CGTACGGGATCGTGTTGCGTAGGTACAGCGCATCCGGCGGCACTGGTGGA
GTAGAAAAGATTCGCCACAAACATCAGACGGCCCTACTGTTCTTGACGTT
CCTGGTGTATTCCTCAGTTTCATCAACGGTGTTCCAAACCTTCGCTTGCG
AGACACTTGATGACGACGTCGAATACCTTCGGGCGGACTACCGTATTCAT
TGCACAGATGCTAAGCACAAGGCCTTTGAAGTGTACGCAGCGATCATGAT
TGTTGTATACCCGGTGGGAATCCCCCTGTTTTATGCTTTCCTGTTGTTTC
AACATCACCACATTCTGGCCGACGCTGGTGCGGACAAGACAGTAGCTCTG
TCGATTTCCGGGCTGTGGGAGCCGTACAGGCCCGAGCGGTTCTATTATGA
AGAAGTCGAGTGCGGACGCCGTGTCAACCTGACGGGTGTAGTCGTCTTTA
TCTTTCCGAACGATGCGGCCCAAATTGCGATCACCATGCTAATTACTTCA
TATTTTTCGTTGCTGTTCGAAATATTGTCGCCGTACGGGTCTGAGTCCGA
CATGTGGCTTTCGCGGGGGGGTCATGTAATTGTGTTCCTCAGTATCTTTG
ATTTGGTGCTGCTGAAAGTGGATGTGTCTGGTGAGAGCGACCAAAGCCAG
GCTGTATTTTCCGGAGTGTTGTTGGCAGGTCATGTGTTGATGATTCTTGT
CATCGTTGTCGAGGTGGTTGGCATCTGTTACGCTTCAGGGATGAAGCGAG
TTGTCGGAGCAGCGTCGTCATCTGAGAGTTCGCCGGGGTTGAGGCCACGC
CCAGGATCGGATGATCCTGCATTTGAGAGCGTTCCCCGCATCGTGGCCGT
CGTTCATGCGGCGAAGTTCAGTGTCAGAAGAGCCCGGACCGACTCGGAGA
ATCGCTGGGATAATGATCGTAAACATCCACAGAGATACCCCTCCTCCAGC
CTAGTGTCTGTGGTATTGATATAA
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Coding sequence (CDS) from alignment at Scaffold_301:96304..99377-

>EsuBft971_4a-0001 ID=EsuBft971_4a-0001|Name=EsuBft971_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2367bp|location=Sequence derived from alignment at Scaffold_301:96304..99377- (Ectocarpus subulatus male Bft15b)
ATGCGCCAGTTCAACTCCAACTTGGGAGGTGCAATCTTCGCGTATTTGTC
GACCGTGTCCTGGGATGGCGATGTCACCCAGTTCAGCCCAAACTCCGCTT
ACGATGATGGAGGTGCAATCTACGCGTATTCTTCGACCGTGTCCTGGGAT
GGCGACGGCACCCAGTTCAGCTCCAACTCCGCTAGCTTTTGTGGAGGTGC
AATCTACGTGATGAGTACTTCCGAATTATCCGACGTCACCGACGCGGTAT
TCATCAACAATCGTGCAGGAAACGGGGGGGCGGTGTATATTTACGCTGGA
GAATTTCAAGACAGGCCTGCTACAATTTCGGGGTGCAATTTCTCGAACAA
CGTGGCGGAGGAGGCCGGCGGGGCTGTGAACACCTTGGCCGTAAGCAATT
TTTCTCTTCTTGTCATTTTGAGGGCAACTCGGCAGCTTCTGATTGCACCA
TATACAACCGGTCGCCACCAATCCGCTTTGCCAGATGTCGGCGGAGCTAT
GAGGCCCGGTGGTGACGCGACTGTCAGCGACTGTGAATTCCTCGACAACA
TCGCTTACAGCCGTGGACTCGCTGTTGATGTGGTCGAGTCTGGGAATATC
AACAACTCAAGATGGTCACAGTCACAGTCCACCTTTTCCGCCTTAAAAAT
GCAGGAAGACCCCAATGTACGCTTTGAGACAGTGTGCCTCGAATGTCCTG
CTTGGGACGAGTGCTTCGAATGCACCATCGCGGACGGTACCGTCACGCCG
ACATGCGAGGTCCCATTGGAGCACACTGCGGCCGACGAAGATGGATTGAC
GTTGGAAACGCTCAAGATTGATGAAGGCTACTGGCGTGCAACTACCGAAA
GCGTCATCATCCTGGCGAGTTACAATGCGAATGCCTGCGCAGGGGGAAAA
ACGGGAGCGGACAGCTTTTGTGCCTCAGGATACCAGGGAACATATTGCGC
AGTGTGCAAAACCGACTATTCTCCATCGCTCGCTCACATTTGCACGCATT
GCTCGAGCTCAAGACGCCAAGGACTCATGTGCATCGCTGCCATCGCCGTG
ATTGTCACGGTCTTGGCTTTTGTGGCAATTTTCCAGTACATGTTGTCGAC
GGAGCATGAAGAGGGGATCTTGTGGTGCTTCCGTCGCAGGGTACTTGGAG
CGGTTCCCGTCCAGTCGTTGAAAATCATCGTCGTCGTGTGGCAGATTTTG
ACCCAGTTTGCTGACACGGCCAATGTCACCTATCCTGGCTTGTACCAAGA
CTTTCTTAGCGCGATCGACGTGATCAACTTCGACATCGGTTCCGTGCTCG
CGGTCGGGTGCTTGTGGTACGAGGTGGACTTCCACGACCGACTTCTCGTC
AATACCATAGGACCGTTGGTTGTTGCTGGATTTTTGGCGATGACGTACGG
GATCGTGTTGCGTAGGTACAGCGCATCCGGCGGCACTGGTGGAGTAGAAA
AGATTCGCCACAAACATCAGACGGCCCTACTGTTCTTGACGTTCCTGGTG
TATTCCTCAGTTTCATCAACGGTGTTCCAAACCTTCGCTTGCGAGACACT
TGATGACGACGTCGAATACCTTCGGGCGGACTACCGTATTCATTGCACAG
ATGCTAAGCACAAGGCCTTTGAAGTGTACGCAGCGATCATGATTGTTGTA
TACCCGGTGGGAATCCCCCTGTTTTATGCTTTCCTGTTGTTTCAACATCA
CCACATTCTGGCCGACGCTGGTGCGGACAAGACAGTAGCTCTGTCGATTT
CCGGGCTGTGGGAGCCGTACAGGCCCGAGCGGTTCTATTATGAAGAAGTC
GAGTGCGGACGCCGTGTCAACCTGACGGGTGTAGTCGTCTTTATCTTTCC
GAACGATGCGGCCCAAATTGCGATCACCATGCTAATTACTTCATATTTTT
CGTTGCTGTTCGAAATATTGTCGCCGTACGGGTCTGAGTCCGACATGTGG
CTTTCGCGGGGGGGTCATGTAATTGTGTTCCTCAGTATCTTTGATTTGGT
GCTGCTGAAAGTGGATGTGTCTGGTGAGAGCGACCAAAGCCAGGCTGTAT
TTTCCGGAGTGTTGTTGGCAGGTCATGTGTTGATGATTCTTGTCATCGTT
GTCGAGGTGGTTGGCATCTGTTACGCTTCAGGGATGAAGCGAGTTGTCGG
AGCAGCGTCGTCATCTGAGAGTTCGCCGGGGTTGAGGCCACGCCCAGGAT
CGGATGATCCTGCATTTGAGAGCGTTCCCCGCATCGTGGCCGTCGTTCAT
GCGGCGAAGTTCAGTGTCAGAAGAGCCCGGACCGACTCGGAGAATCGCTG
GGATAATGATCGTAAACATCCACAGAGATACCCCTCCTCCAGCCTAGTGT
CTGTGGTATTGATATAA
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