EsuBft971_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft971_3a-0001
Unique Name	EsuBft971_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_301	contig	Scaffold_301:99440..100403 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FV90
ProteomeId	EsuBft971_3
Protein domains	IPR003368
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR011050
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Owner	apollo_admin@sb-roscoff.fr
Note	probable outer membrane protein os:chlamydia muridarum (strain n nigg) gn:pmpa pe:2 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	903
Evalue	3.81e-06
EggNOG OGs	2BFIX@1\|root,2S176@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft971_3a	EsuBft971_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_301 99440..100403 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_3a-0001-exon	agat-exon-83645	Ectocarpus subulatus male Bft15b	exon	Scaffold_301 99440..99720 +
EsuBft971_3a-0001-exon	EsuBft971_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_301 99782..100403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_3a-0001-cds	EsuBft971_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_301 99440..99720 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft971_3a-0001	EsuBft971_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_301 99440..100403 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_301:99440..100403+
coding sequence from alignment at Scaffold_301:99440..100403+

spliced messenger RNA

>EsuBft971_3a-0001 ID=EsuBft971_3a-0001|Name=EsuBft971_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=903bp|location=Sequence derived from alignment at Scaffold_301:99440..100403+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTCATCCAGGTTGTGTGCATGGGCTACATAGCAGCCGTCGCTCG
GAGCCAAGAACTTCAGGAGTGCAACGTCGCCAACAGGTCCCTTACCGTTG
GCAGCACCGGAGACGCGGATGATCTGGCAAACTCCGTTATATGTTCGAAC
GGTGACTTCAATGTACAGTGGGATGAGGAAGTTTTCGTGACAACAACAAT
CCGCGTCAGCGATGGCACATCGCTCAACATCACTGGGACTGGACCAGGCG
CAATCGCGGATGGGGGTGGCAGTACGCAACTCGCTTTGTCTGGTGGGGCT
ATCTCGGCGGCTTACTCTAGCGTTTCGTTAAGCGGAATCACATCGTTCAG
CTCCAACTCCGCTAACTATGATGGAGGTGCAATTTACGCGTATGCTTCGA
ACGTGTCCTGGGATGGCGACGGCACCCAGTTCAGCTCCAACTCCGCTTAC
GATAATGGAGGTGCAATCTACGCGTTGGAGTCGAACGTGTCCTGGGATGG
CGACGGCACCCAGTTCAGCTCCAACTTCGCTAACAATGAGGGAGGTGCAA
TCTACGCGTTGGAGTCGAACGTGTCCTGGGATGGCGACGACACCCAGTTC
AGCTCCAATTCCGCTTACTTTGAGGTGCAATCTTCGCGTCTCCTTCGAAC
GTGTCCTGGGATGGCGACGGAGCATTCACCTATCGGTTGGGNCGTGGATT
CACCAGTAGTAGGTCACGTGGCTTCAACAACGCAATCATCCGCAGATGTT
GGTGCTGCTGAGAGCGGTGGGTTTCCGACTCAGGGTCACGCTCGGGCCTT
GGCTTCCGGCGGTGACCGCCAGCCGGAGCTCCGGCGTGCGGATGACCAAG
TCCAGGCCCACGTTATGTCGCGTTTGGCCCATACAGTTGGCGCCCGCAGT
TAA

protein sequence of EsuBft971_3a-0001

>EsuBft971_3 ID=EsuBft971_3|Name=EsuBft971_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MGLIQVVCMGYIAAVARSQELQECNVANRSLTVGSTGDADDLANSVICSN
GDFNVQWDEEVFVTTTIRVSDGTSLNITGTGPGAIADGGGSTQLALSGGA
ISAAYSSVSLSGITSFSSNSANYDGGAIYAYASNVSWDGDGTQFSSNSAY
DNGGAIYALESNVSWDGDGTQFSSNFANNEGGAIYALESNVSWDGDDTQF
SSNSAYFEVQSSRLLRTCPGMATEHSPIGWXVDSPVVGHVASTTQSSADV
GAAESGGFPTQGHARALASGGDRQPELRRADDQVQAHVMSRLAHTVGARS

mRNA from alignment at Scaffold_301:99440..100403+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft971_3a-0001 ID=EsuBft971_3a-0001|Name=EsuBft971_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=964bp|location=Sequence derived from alignment at Scaffold_301:99440..100403+ (Ectocarpus subulatus male Bft15b)
ATGGGTCTCATCCAGGTTGTGTGCATGGGCTACATAGCAGCCGTCGCTCG
GAGCCAAGAACTTCAGGAGTGCAACGTCGCCAACAGGTCCCTTACCGTTG
GCAGCACCGGAGACGCGGATGATCTGGCAAACTCCGTTATATGTTCGAAC
GGTGACTTCAATGTACAGTGGGATGAGGAAGTTTTCGTGACAACAACAAT
CCGCGTCAGCGATGGCACATCGCTCAACATCACTGGGACTGGACCAGGCG
CAATCGCGGATGGGGGTGGCAGTACGCAACTGTTCGTTGTAGAAGGGGGT
TCAACATTGCACCTCTCGGACATGACTTTTGAGCAATGGCAGCGCTTTGT
CTGGTGGGGCTATCTCGGCGGCTTACTCTAGCGTTTCGTTAAGCGGAATC
ACATCGTTCAGCTCCAACTCCGCTAACTATGATGGAGGTGCAATTTACGC
GTATGCTTCGAACGTGTCCTGGGATGGCGACGGCACCCAGTTCAGCTCCA
ACTCCGCTTACGATAATGGAGGTGCAATCTACGCGTTGGAGTCGAACGTG
TCCTGGGATGGCGACGGCACCCAGTTCAGCTCCAACTTCGCTAACAATGA
GGGAGGTGCAATCTACGCGTTGGAGTCGAACGTGTCCTGGGATGGCGACG
ACACCCAGTTCAGCTCCAATTCCGCTTACTTTGAGGTGCAATCTTCGCGT
CTCCTTCGAACGTGTCCTGGGATGGCGACGGAGCATTCACCTATCGGTTG
GGNCGTGGATTCACCAGTAGTAGGTCACGTGGCTTCAACAACGCAATCAT
CCGCAGATGTTGGTGCTGCTGAGAGCGGTGGGTTTCCGACTCAGGGTCAC
GCTCGGGCCTTGGCTTCCGGCGGTGACCGCCAGCCGGAGCTCCGGCGTGC
GGATGACCAAGTCCAGGCCCACGTTATGTCGCGTTTGGCCCATACAGTTG
GCGCCCGCAGTTAA

Coding sequence (CDS) from alignment at Scaffold_301:99440..100403+

>EsuBft971_3a-0001 ID=EsuBft971_3a-0001|Name=EsuBft971_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_301:99440..100403+ (Ectocarpus subulatus male Bft15b)
ATGGGTCTCATCCAGGTTGTGTGCATGGGCTACATAGCAGCCGTCGCTCG
GAGCCAAGAACTTCAGGAGTGCAACGTCGCCAACAGGTCCCTTACCGTTG
GCAGCACCGGAGACGCGGATGATCTGGCAAACTCCGTTATATGTTCGAAC
GGTGACTTCAATGTACAGTGGGATGAGGAAGTTTTCGTGACAACAACAAT
CCGCGTCAGCGATGGCACATCGCTCAACATCACTGGGACTGGACCAGGCG
CAATCGCGGATGGGGGTGGCAGTACGCAACTCGCTTTGTCTGGTGGGGCT
ATCTCGGCGGCTTACTCTAGCGTTTCGTTAAGCGGAATCACATCGTTCAG
CTCCAACTCCGCTAACTATGATGGAGGTGCAATTTACGCGTATGCTTCGA
ACGTGTCCTGGGATGGCGACGGCACCCAGTTCAGCTCCAACTCCGCTTAC
GATAATGGAGGTGCAATCTACGCGTTGGAGTCGAACGTGTCCTGGGATGG
CGACGGCACCCAGTTCAGCTCCAACTTCGCTAACAATGAGGGAGGTGCAA
TCTACGCGTTGGAGTCGAACGTGTCCTGGGATGGCGACGACACCCAGTTC
AGCTCCAATTCCGCTTACTTTGAGGTGCAATCTTCGCGTCTCCTTCGAAC
GTGTCCTGGGATGGCGACGGAGCATTCACCTATCGGTTGGGNCGTGGATT
CACCAGTAGTAGGTCACGTGGCTTCAACAACGCAATCATCCGCAGATGTT
GGTGCTGCTGAGAGCGGTGGGTTTCCGACTCAGGGTCACGCTCGGGCCTT
GGCTTCCGGCGGTGACCGCCAGCCGGAGCTCCGGCGTGCGGATGACCAAG
TCCAGGCCCACGTTATGTCGCGTTTGGCCCATACAGTTGGCGCCCGCAGT
TAA