EsuBft971_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft971_2a-0001
Unique NameEsuBft971_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_301contigScaffold_301:100995..103112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft971_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length108
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft971_2aEsuBft971_2aEctocarpus subulatus male Bft15bgeneScaffold_301 100995..103112 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_2a-0001-exonEsuBft971_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_301 100995..101049 +
EsuBft971_2a-0001-exonagat-exon-83644Ectocarpus subulatus male Bft15bexonScaffold_301 102085..103112 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_2a-0001-exonagat-five_prime_utr-15392Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_301 100995..101049 +
EsuBft971_2a-0001-exonagat-five_prime_utr-15393Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_301 102085..102116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_2a-0001-cdsEsuBft971_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_301 102117..103112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_2a-0001EsuBft971_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_301 102117..103112 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft971_2a-0001 ID=EsuBft971_2a-0001|Name=EsuBft971_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1083bp|location=Sequence derived from alignment at Scaffold_301:100995..103112+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAAGCCACCGTCGGGCGGGCATTCCTTTAAACTTGGCGTCAGTCTGGCAG
GCACGAAGCAGAAATGTCGGAGAAGTCGGAGGAACTGATGGACTTTGAAG
AAGAGGAGGTGGAGAACGCGTCCCAGTCTTCACAGGGGGAGGACGCATCC
CAGTCTTCCCCGGACCATCGTGAAGTCTATGGACAAGGTCTTCTTCGCGA
CATCGAGGCGGACAGCCCCAAGGCTCTGGCTGCAGCTTACCGCTCGGGCA
GCATCACCCTCCAGGACATTGTGGACGCGGCCCGCCTTTCCTCCCCTCAC
CCCCTTGCCGTCCCCACTGTTGATTTTGACCTAGACGAGGAGGAGTTTGT
GGACATGTCTAACGATGAAGCCGACGCGTGGACACAACTCCAGACCATCT
TCAGCCAGCGGCTGCAGGCTGAGCTCGACAAGGCAGCGGAGGACGCGGAG
CAACGGGCCCGAGAAGAGGAGGCCGCTCAGAGGGCTCGGGAGCTAACAGC
TCAGCGGGAGAGGGAGGAAGAAGCTGCGCGGGCCGTGCAACGGGAGCGGG
AGCGCGAGGAAGCGGAGAGGCGCGCGATAGAACAGCGGCGAGCGGCCAGG
AGGCAACTATACAACGACACGGTGAAGGCTCGCCACGAGTTCGAAGAGAG
GAGGAATCGTCTTCGCCCCGTCGAGACTTCGGCCGCTCAGCCCCCCCCCC
CCCCTCCCGCCGTGTTGCCTGCCTCCTCTGCTCCTCGCCGGGTCGTCACC
TCTCCGCGTTCGCCCAGCCCCGACGTGTCGCCGTCTCAGAAGGCAGCATC
GACGCATCCACGACCTGCTACGAGCTTTGAGGTCACCCTCGACAACCCAC
GGTCAGCTGCCACATCCCCGCTCTACTACCAATTCCTTGCTGCCGACGTT
GCCTTTCTCGGTCGCCCCCTCGATACGCCATCGGCAGACATCTTCTTTCA
CCAAGAGGACGAACACGAGGCTCGCTGGATATTATCGGCGGCACAGGGCA
CCGCCGGTACTGCCTTCCCGGACTCCAGGGNGATCAATCGGGAAGGACTC
ACGCTTCAGGCAGCAAGTTTCTCCCCGGCTTAA
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protein sequence of EsuBft971_2a-0001

>EsuBft971_2 ID=EsuBft971_2|Name=EsuBft971_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MDFEEEEVENASQSSQGEDASQSSPDHREVYGQGLLRDIEADSPKALAAA
YRSGSITLQDIVDAARLSSPHPLAVPTVDFDLDEEEFVDMSNDEADAWTQ
LQTIFSQRLQAELDKAAEDAEQRAREEEAAQRARELTAQREREEEAARAV
QREREREEAERRAIEQRRAARRQLYNDTVKARHEFEERRNRLRPVETSAA
QPPPPPPAVLPASSAPRRVVTSPRSPSPDVSPSQKAASTHPRPATSFEVT
LDNPRSAATSPLYYQFLAADVAFLGRPLDTPSADIFFHQEDEHEARWILS
AAQGTAGTAFPDSRXINREGLTLQAASFSPA
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mRNA from alignment at Scaffold_301:100995..103112+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft971_2a-0001 ID=EsuBft971_2a-0001|Name=EsuBft971_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2118bp|location=Sequence derived from alignment at Scaffold_301:100995..103112+ (Ectocarpus subulatus male Bft15b)
CAAGCCACCGTCGGGCGGGCATTCCTTTAAACTTGGCGTCAGTCTGGCAG
GCACGGTAAGAGAGAATTGGACGCGATTCTTCCCTTTTCGTGCGCCGAGG
CACGCTTTGCTCACGACCACCACGTTGCTTGTTGTTAGGTCTCACCACCC
ACGAGAATTTAGACTTCGCCCTTATTGGCGATTACCTGCGGGATGCCGGC
TCATGATGCTTTCGCTCGTCGCTCACGAGACTGGGACCTTGCTAGTGATA
CGCGCATAGGAGGGCGCCGCGGTGATTCTCCCGATTTTTCTTACATGAAA
TGCCCATCACGAGCCATTTTGTCTGCTTCGGGAGTGCATGAAGTTCTTTC
TGTGGCGGATACGTTGTGGCGGCAGCGGCCTGAGCTGCAACCCCTGTTTA
GTGGGGCTCGAGATGACAGCATGCTCCCCGCTTCTACTACTGCTCCTACT
GCTTTTGTGCCGGCTTACCGGCCTGCATCCGCCGACTTCCCCGTGGTGCT
CTCTGATTTGACTCCACGTATTTCGACATGGCGAATTTTATGTGTACACA
AGTTGGGCGTTCGATACACCACCGATCTGCCCTTCATTTTTCGAGAACAA
CTCACTTTTTTTTTTGGGCCATCGGCTATGCATGTAAAAGACCTCGAGTT
GGAGCCTTTGCTGCCGCGCAAACCCACTGCGGTCTTTCCCCGCACCTCAG
CGCCTGTTGCGGCAAAACGTCGTGCTGCGCTGCGCGAGTTTTGGACAGAC
AAACTAGTCTCCTCGTATAACACAGGCCCTTTTGTGCTAGCTTCTACTGC
TGTTGGTACATGGCATGGAGTGCTTCTGGATGCCTTTTATGATTGGTTGG
ATCCGCTTCAACCAAGGGTACATCAAGCTTTTCTGGCCGGGCGTATGCTC
TCTTGCGGATATCTTCGCTTTCCGTTTGGACCCAGGCAGGACCCTCCGGC
CGTTGCACCCACTTTTACCGCGTCTTCTGTCCCTGGCTCTGCTGTCCCCG
GCTCTGCTGTTGCCCCCACCGCCGTGGCCCCCGCCATTGCTGTTTCTACT
CGTGATCGGGAATACCCCGGTTCTCTCGCTTTTCTTTCAGAAGCAGAAAT
GTCGGAGAAGTCGGAGGAACTGATGGACTTTGAAGAAGAGGAGGTGGAGA
ACGCGTCCCAGTCTTCACAGGGGGAGGACGCATCCCAGTCTTCCCCGGAC
CATCGTGAAGTCTATGGACAAGGTCTTCTTCGCGACATCGAGGCGGACAG
CCCCAAGGCTCTGGCTGCAGCTTACCGCTCGGGCAGCATCACCCTCCAGG
ACATTGTGGACGCGGCCCGCCTTTCCTCCCCTCACCCCCTTGCCGTCCCC
ACTGTTGATTTTGACCTAGACGAGGAGGAGTTTGTGGACATGTCTAACGA
TGAAGCCGACGCGTGGACACAACTCCAGACCATCTTCAGCCAGCGGCTGC
AGGCTGAGCTCGACAAGGCAGCGGAGGACGCGGAGCAACGGGCCCGAGAA
GAGGAGGCCGCTCAGAGGGCTCGGGAGCTAACAGCTCAGCGGGAGAGGGA
GGAAGAAGCTGCGCGGGCCGTGCAACGGGAGCGGGAGCGCGAGGAAGCGG
AGAGGCGCGCGATAGAACAGCGGCGAGCGGCCAGGAGGCAACTATACAAC
GACACGGTGAAGGCTCGCCACGAGTTCGAAGAGAGGAGGAATCGTCTTCG
CCCCGTCGAGACTTCGGCCGCTCAGCCCCCCCCCCCCCCTCCCGCCGTGT
TGCCTGCCTCCTCTGCTCCTCGCCGGGTCGTCACCTCTCCGCGTTCGCCC
AGCCCCGACGTGTCGCCGTCTCAGAAGGCAGCATCGACGCATCCACGACC
TGCTACGAGCTTTGAGGTCACCCTCGACAACCCACGGTCAGCTGCCACAT
CCCCGCTCTACTACCAATTCCTTGCTGCCGACGTTGCCTTTCTCGGTCGC
CCCCTCGATACGCCATCGGCAGACATCTTCTTTCACCAAGAGGACGAACA
CGAGGCTCGCTGGATATTATCGGCGGCACAGGGCACCGCCGGTACTGCCT
TCCCGGACTCCAGGGNGATCAATCGGGAAGGACTCACGCTTCAGGCAGCA
AGTTTCTCCCCGGCTTAA
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Coding sequence (CDS) from alignment at Scaffold_301:100995..103112+

>EsuBft971_2a-0001 ID=EsuBft971_2a-0001|Name=EsuBft971_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_301:100995..103112+ (Ectocarpus subulatus male Bft15b)
ATGGACTTTGAAGAAGAGGAGGTGGAGAACGCGTCCCAGTCTTCACAGGG
GGAGGACGCATCCCAGTCTTCCCCGGACCATCGTGAAGTCTATGGACAAG
GTCTTCTTCGCGACATCGAGGCGGACAGCCCCAAGGCTCTGGCTGCAGCT
TACCGCTCGGGCAGCATCACCCTCCAGGACATTGTGGACGCGGCCCGCCT
TTCCTCCCCTCACCCCCTTGCCGTCCCCACTGTTGATTTTGACCTAGACG
AGGAGGAGTTTGTGGACATGTCTAACGATGAAGCCGACGCGTGGACACAA
CTCCAGACCATCTTCAGCCAGCGGCTGCAGGCTGAGCTCGACAAGGCAGC
GGAGGACGCGGAGCAACGGGCCCGAGAAGAGGAGGCCGCTCAGAGGGCTC
GGGAGCTAACAGCTCAGCGGGAGAGGGAGGAAGAAGCTGCGCGGGCCGTG
CAACGGGAGCGGGAGCGCGAGGAAGCGGAGAGGCGCGCGATAGAACAGCG
GCGAGCGGCCAGGAGGCAACTATACAACGACACGGTGAAGGCTCGCCACG
AGTTCGAAGAGAGGAGGAATCGTCTTCGCCCCGTCGAGACTTCGGCCGCT
CAGCCCCCCCCCCCCCCTCCCGCCGTGTTGCCTGCCTCCTCTGCTCCTCG
CCGGGTCGTCACCTCTCCGCGTTCGCCCAGCCCCGACGTGTCGCCGTCTC
AGAAGGCAGCATCGACGCATCCACGACCTGCTACGAGCTTTGAGGTCACC
CTCGACAACCCACGGTCAGCTGCCACATCCCCGCTCTACTACCAATTCCT
TGCTGCCGACGTTGCCTTTCTCGGTCGCCCCCTCGATACGCCATCGGCAG
ACATCTTCTTTCACCAAGAGGACGAACACGAGGCTCGCTGGATATTATCG
GCGGCACAGGGCACCGCCGGTACTGCCTTCCCGGACTCCAGGGNGATCAA
TCGGGAAGGACTCACGCTTCAGGCAGCAAGTTTCTCCCCGGCTTAA
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