EsuBft971_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft971_11a-0001
Unique NameEsuBft971_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_301contigScaffold_301:30851..31340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQG3
ProteomeIdEsuBft971_11
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length21
Hectar predicted targeting categorysignal peptide
Evalue7.19e-14
EggNOG OGsCOG0491@1|root,KOG0813@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameLACTB2
KEGG koko:K15318
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0016070,GO:0016787,GO:0016788,GO:0018958,GO:0019438,GO:0019748,GO:0019752,GO:0031974,GO:0032787,GO:0034641,GO:0036182,GO:0036184,GO:0042180,GO:0042181,GO:0042537,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046189,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070013,GO:0071704,GO:0072330,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900600,GO:1900602,GO:1900813,GO:1900815,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663
Descriptionhydroxyacylglutathione hydrolase activity
COG categoryT
BRITEko00000,ko01008
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft971_11aEsuBft971_11aEctocarpus subulatus male Bft15bgeneScaffold_301 30851..31340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_11a-0001-exonEsuBft971_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_301 30851..30877 -
EsuBft971_11a-0001-exonagat-exon-83687Ectocarpus subulatus male Bft15bexonScaffold_301 31152..31340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_11a-0001-cdsEsuBft971_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_301 30851..30877 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_11a-0001-exonagat-five_prime_utr-15391Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_301 31290..31340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft971_11a-0001EsuBft971_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_301 30851..31289 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft971_11a-0001 ID=EsuBft971_11a-0001|Name=EsuBft971_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=216bp|location=Sequence derived from alignment at Scaffold_301:30851..31340- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGTGGTTGAATGAAACCCTAGACCACCCGCTTCCCGCAGCCACCGCGGC
GATGGCTTACCTGTTGAGCTCTGCATCTTTCCTGGCCTCGGCCTTCGTGT
CTAATGCCCTGCATTTATTTTCCCGGTCCATCCGCGCCAGCCCTTTACTC
CATCGGGCGGTTAAGGTATTGGACCGGGGCAAGCCGAAGATCCGCCGATG
CTCCGACGCTGAATAA
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protein sequence of EsuBft971_11a-0001

>EsuBft971_11 ID=EsuBft971_11|Name=EsuBft971_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MAYLLSSASFLASAFVSNALHLFSRSIRASPLLHRAVKVLDRGKPKIRRC
SDAE
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mRNA from alignment at Scaffold_301:30851..31340-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft971_11a-0001 ID=EsuBft971_11a-0001|Name=EsuBft971_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=490bp|location=Sequence derived from alignment at Scaffold_301:30851..31340- (Ectocarpus subulatus male Bft15b)
TGGTGGTTGAATGAAACCCTAGACCACCCGCTTCCCGCAGCCACCGCGGC
GATGGCTTACCTGTTGAGCTCTGCATCTTTCCTGGCCTCGGCCTTCGTGT
CTAATGCCCTGCATTTATTTTCCCGGTCCATCCGCGCCAGCCCTTTACTC
CATCGGGCGGTTAAGGTATTGGACCGGGGCAAGCCGAAGGTGCGTCTGTT
GTACAGCAGTAGAGCTGGATGTTGTACATAGCAGCGACGACGTTCATCAT
GCGTGCCCTCTAAACGGGTTCTATCACCAAGTTGCGTGTTTCATTTCATC
TGTTATGTGGGCGGTTCTGCCTCTCCCTGTTGCTGTAAGACGTGAAGTAT
AGCAGAAAGCCAGCGCCGTGCACCCTTCCTTACAATTATTTCGTGCTATT
TACCTCAGCAATCTGTGCAAGAAACTCGTTGAATTTTTTACCACCCCCGG
TGCCAACTCTCAGATCCGCCGATGCTCCGACGCTGAATAA
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Coding sequence (CDS) from alignment at Scaffold_301:30851..31340-

>EsuBft971_11a-0001 ID=EsuBft971_11a-0001|Name=EsuBft971_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_301:30851..31340- (Ectocarpus subulatus male Bft15b)
ATGGCTTACCTGTTGAGCTCTGCATCTTTCCTGGCCTCGGCCTTCGTGTC
TAATGCCCTGCATTTATTTTCCCGGTCCATCCGCGCCAGCCCTTTACTCC
ATCGGGCGGTTAAGGTATTGGACCGGGGCAAGCCGAAGATCCGCCGATGC
TCCGACGCTGAATAA
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