EsuBft970_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft970_7a-0001
Unique Name	EsuBft970_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_440	contig	Scaffold_440:408108..410193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft970_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	189
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft970_7a	EsuBft970_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_440 408108..410193 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_7a-0001	EsuBft970_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_440 408375..408812 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_7a-0001-exon	agat-exon-19580	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 408108..409715 +
EsuBft970_7a-0001-exon	EsuBft970_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 409903..410193 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_7a-0001-exon	agat-five_prime_utr-15390	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_440 408108..408374 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_7a-0001-cds	EsuBft970_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_440 408375..408812 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_7a-0001-exon	agat-three_prime_utr-23651	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_440 408813..409715 +
EsuBft970_7a-0001-exon	agat-three_prime_utr-23652	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_440 409903..410193 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_440:408108..410193+
coding sequence from alignment at Scaffold_440:408108..410193+

spliced messenger RNA

>EsuBft970_7a-0001 ID=EsuBft970_7a-0001|Name=EsuBft970_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1899bp|location=Sequence derived from alignment at Scaffold_440:408108..410193+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTTATGGCTCCCGAAGGTTGGCCCGATGGAAAAAAAAAAAATCGTTGCG
AAGTTCCGGGCGGACAATCCGTTGGAAGCCATATTATGGTCCAACGGATT
ATTTCGTCTGGTTTTCGAGCATCCTGCTGTGGCATGTAGCGCCAGGGGGC
CCACGACATGTCAGGATTCGAGATTGGATTGAGGCCTAGAGCGGCCGAGC
GGCCACCACAGACCACACAACCCACGGTAGAGAGCGAGAGCCAAGTAAGT
GCAGCACGGGCACCACCATGTCAACCGCCTCTCTTATGCTAGAGAAGAAT
GCCAGCTCCGACTGGGTGATCAACAGGATGAAGGGCACCAACTGGGGCGA
CAAACCGAACGTAGGCCATGCTAGTCTGTTCCAGTTCTTGCCGGGGTTTT
ACGTTGCCATGAGCGTAAAGGAGAGCGGCAAATGCTACAGCGAGCCTGAA
CGAAATGCAGGGGCAGTCAAAGTTTACAAAAGCTTCGCTGTGCCGGCGTT
CCTTCGCTGGTTGGTAGAGGAATACGACTTCACCAATACCCCAGCTTGGC
TCACGAAGGACATCATGGGCAGCAACTCGATAGGACCTAAAGTCTTGCGC
CCCGGGGCGAACTCGCACATCAGGGGTCGATCCCCCCCGACAGAAAACGA
ACTCCAACATGTCGCGTTTCCCCGGCTCTGCTTTATTTTGACGGGGGCAC
CATAATTAACCAGGGAGTTGGTACTGGCTGCACGGCCGGCGAGTACTGTG
GTAGTGCCATGTGTCAGGGTGAACAGAAAATCGAATTATTCATCGACTCG
GCGCTCTTGGATCGCGCGGTCTGCCTGCCATCGACTCGGCGCTCTTGGAT
CAATATTTGCGACAATTGGACATGCCGTCCTGCGGGAGGAAAGTCGTGTA
CCGCCATAAAAAAATAAAGAGAGGAGCGAGCGTGGATACCGTTCCAAGTG
TCGCCTTGATATTCACCATCCGTTCCTATCTCTGCTTGGCACCTTACATC
ATCCGGTCCAAAACACGCGGATGTCTTCCGTGGTCACAGACCAGCTACCC
AGATTTTGGGCACACACAATGCACTCGATAGTCAGACGAGAAAGCCAAAA
CGGCCCAGGTCTTGGCATAGACCTAAACACATGAATAATATAATTGAAGG
TCCCAGTCAGACACATCAGGACGAGGAAGGGAATAAGTAGGAACATTCTC
GTTCGGTAGGCGGTGCCAAACCCCTTCACTCATTCAGACAACATTGAAAG
TGCACGATTTTGATCTATTCCTCCTACATTCACCGCTGGGGTTGACACTG
CCATGCCACTTGCGGTGGTTCTAGTCACCAACTTCGCTCAGCTATCGACC
AACAGGCGACTCAGATGGTGTACAAAGATCCGGTTACAAAGGTTATAGAA
CGTAAAATAACAAACAGGGAGAGCGGCGTACTGCACCTAGATCACGGCGA
ACCACATACATAAATGGTGGACGGCGACAAAACACAACCTCGTACCGAGA
ACACACTGCAAATAAGACGTTGTAACCAGCACCTGCACCCTGCCTGCACA
ACCTACCCAGTCCGGTAAACTGATGCAAAACCTTCCATAGAAACATTTCC
AATTTGTGATTTCATAATGGCATATTATGTAACGGTGCCTCCCATGAAGT
GAATCAGTCGAATCCCTAAGGATGCACTCTAAAACGCAGAGGAAGAAAGC
CACGATTCTAAGGACATGCAGTACGGCTCCTCCAGCAAACCCACTCCGAG
CGTGAAATAACCAAGCCGGTTTGGCATACAGTTCTCAGGCTGAACGAAAA
CACGCGCGTCAAAGAAAAGAGATTCGCGCACACCAAACCAAAAAAAGCGC
CACGTGCACTTTAGCCAGTCGTGGCGTGTCTGAGCCACCGAATGTCGTT

protein sequence of EsuBft970_7a-0001

>EsuBft970_7 ID=EsuBft970_7|Name=EsuBft970_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=145bp
MSTASLMLEKNASSDWVINRMKGTNWGDKPNVGHASLFQFLPGFYVAMSV
KESGKCYSEPERNAGAVKVYKSFAVPAFLRWLVEEYDFTNTPAWLTKDIM
GSNSIGPKVLRPGANSHIRGRSPPTENELQHVAFPRLCFILTGAP

mRNA from alignment at Scaffold_440:408108..410193+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft970_7a-0001 ID=EsuBft970_7a-0001|Name=EsuBft970_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2086bp|location=Sequence derived from alignment at Scaffold_440:408108..410193+ (Ectocarpus subulatus male Bft15b)
TCTTATGGCTCCCGAAGGTTGGCCCGATGGAAAAAAAAAAAATCGTTGCG
AAGTTCCGGGCGGACAATCCGTTGGAAGCCATATTATGGTCCAACGGATT
ATTTCGTCTGGTTTTCGAGCATCCTGCTGTGGCATGTAGCGCCAGGGGGC
CCACGACATGTCAGGATTCGAGATTGGATTGAGGCCTAGAGCGGCCGAGC
GGCCACCACAGACCACACAACCCACGGTAGAGAGCGAGAGCCAAGTAAGT
GCAGCACGGGCACCACCATGTCAACCGCCTCTCTTATGCTAGAGAAGAAT
GCCAGCTCCGACTGGGTGATCAACAGGATGAAGGGCACCAACTGGGGCGA
CAAACCGAACGTAGGCCATGCTAGTCTGTTCCAGTTCTTGCCGGGGTTTT
ACGTTGCCATGAGCGTAAAGGAGAGCGGCAAATGCTACAGCGAGCCTGAA
CGAAATGCAGGGGCAGTCAAAGTTTACAAAAGCTTCGCTGTGCCGGCGTT
CCTTCGCTGGTTGGTAGAGGAATACGACTTCACCAATACCCCAGCTTGGC
TCACGAAGGACATCATGGGCAGCAACTCGATAGGACCTAAAGTCTTGCGC
CCCGGGGCGAACTCGCACATCAGGGGTCGATCCCCCCCGACAGAAAACGA
ACTCCAACATGTCGCGTTTCCCCGGCTCTGCTTTATTTTGACGGGGGCAC
CATAATTAACCAGGGAGTTGGTACTGGCTGCACGGCCGGCGAGTACTGTG
GTAGTGCCATGTGTCAGGGTGAACAGAAAATCGAATTATTCATCGACTCG
GCGCTCTTGGATCGCGCGGTCTGCCTGCCATCGACTCGGCGCTCTTGGAT
CAATATTTGCGACAATTGGACATGCCGTCCTGCGGGAGGAAAGTCGTGTA
CCGCCATAAAAAAATAAAGAGAGGAGCGAGCGTGGATACCGTTCCAAGTG
TCGCCTTGATATTCACCATCCGTTCCTATCTCTGCTTGGCACCTTACATC
ATCCGGTCCAAAACACGCGGATGTCTTCCGTGGTCACAGACCAGCTACCC
AGATTTTGGGCACACACAATGCACTCGATAGTCAGACGAGAAAGCCAAAA
CGGCCCAGGTCTTGGCATAGACCTAAACACATGAATAATATAATTGAAGG
TCCCAGTCAGACACATCAGGACGAGGAAGGGAATAAGTAGGAACATTCTC
GTTCGGTAGGCGGTGCCAAACCCCTTCACTCATTCAGACAACATTGAAAG
TGCACGATTTTGATCTATTCCTCCTACATTCACCGCTGGGGTTGACACTG
CCATGCCACTTGCGGTGGTTCTAGTCACCAACTTCGCTCAGCTATCGACC
AACAGGCGACTCAGATGGTGTACAAAGATCCGGTTACAAAGGTTATAGAA
CGTAAAATAACAAACAGGGAGAGCGGCGTACTGCACCTAGATCACGGCGA
ACCACATACATAAATGGTGGACGGCGACAAAACACAACCTCGTACCGAGA
ACACACTGCAAATAAGACGTTGTAACCAGCACCTGCACCCTGCCTGCACA
ACCTACCCAGTCCGGTAAACTGATGCAAAACCTTCCATAGAAACATTTCC
AATTTGTGGTTATAGGCCAACTAATCAACTAGGGTAAACACAAGCGTCAA
TCAAAGAGAACATCAGAAAAATATGATAATCGTGACAACAAACCACAACC
AGGGGTGTAGAGACAAAAATAAACTGATCGTAGTGGATTGCTTGTAGCCC
CAACCCCCATTGCAAGAAGTGTGGCGAACACCGACCAGTACTTAGATTTC
ATAATGGCATATTATGTAACGGTGCCTCCCATGAAGTGAATCAGTCGAAT
CCCTAAGGATGCACTCTAAAACGCAGAGGAAGAAAGCCACGATTCTAAGG
ACATGCAGTACGGCTCCTCCAGCAAACCCACTCCGAGCGTGAAATAACCA
AGCCGGTTTGGCATACAGTTCTCAGGCTGAACGAAAACACGCGCGTCAAA
GAAAAGAGATTCGCGCACACCAAACCAAAAAAAGCGCCACGTGCACTTTA
GCCAGTCGTGGCGTGTCTGAGCCACCGAATGTCGTT

Coding sequence (CDS) from alignment at Scaffold_440:408108..410193+

>EsuBft970_7a-0001 ID=EsuBft970_7a-0001|Name=EsuBft970_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=438bp|location=Sequence derived from alignment at Scaffold_440:408108..410193+ (Ectocarpus subulatus male Bft15b)
ATGTCAACCGCCTCTCTTATGCTAGAGAAGAATGCCAGCTCCGACTGGGT
GATCAACAGGATGAAGGGCACCAACTGGGGCGACAAACCGAACGTAGGCC
ATGCTAGTCTGTTCCAGTTCTTGCCGGGGTTTTACGTTGCCATGAGCGTA
AAGGAGAGCGGCAAATGCTACAGCGAGCCTGAACGAAATGCAGGGGCAGT
CAAAGTTTACAAAAGCTTCGCTGTGCCGGCGTTCCTTCGCTGGTTGGTAG
AGGAATACGACTTCACCAATACCCCAGCTTGGCTCACGAAGGACATCATG
GGCAGCAACTCGATAGGACCTAAAGTCTTGCGCCCCGGGGCGAACTCGCA
CATCAGGGGTCGATCCCCCCCGACAGAAAACGAACTCCAACATGTCGCGT
TTCCCCGGCTCTGCTTTATTTTGACGGGGGCACCATAA