EsuBft970_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft970_5a-0001
Unique Name	EsuBft970_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_440	contig	Scaffold_440:429466..432985 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft970_5
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	284
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft970_5a	EsuBft970_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_440 429466..432985 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_5a-0001	EsuBft970_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_440 432334..432945 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_5a-0001-exon	agat-exon-19578	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 429466..429761 -
EsuBft970_5a-0001-exon	EsuBft970_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_440 430433..432985 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_5a-0001-exon	agat-three_prime_utr-23649	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_440 429466..429761 -
EsuBft970_5a-0001-exon	agat-three_prime_utr-23650	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_440 430433..432333 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_5a-0001-cds	EsuBft970_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_440 432334..432945 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft970_5a-0001-exon	agat-five_prime_utr-15389	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_440 432946..432985 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_440:429466..432985-
coding sequence from alignment at Scaffold_440:429466..432985-

spliced messenger RNA

>EsuBft970_5a-0001 ID=EsuBft970_5a-0001|Name=EsuBft970_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2849bp|location=Sequence derived from alignment at Scaffold_440:429466..432985- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAAAACAAAAAGTTGGCGGTGGACGCCCTGCACGCCCCATGACCTTCA
CGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCTGACTAGGCGT
GGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGAAAAAGTATCG
TCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGCATGTGGCGCA
GCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACGTGACTGGTCG
GCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTTCTAGCGGCAG
CGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAACGACACACCCC
CGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGCGGCTGAGATC
CTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTGGCCGACCGAA
GGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGATAGATACAGAG
AGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGAAGTGCGGGAC
CTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGAAACATGAGCA
GGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGGGGTGTGTGTN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGTTCGGCATCT
TGTGCTTCCTTACGTACAGACGACACCTACGTATGACTTAATTTATTTTC
TGGTGCTTTCACTTCCAACGACAGCTGTAAGCACTGTGTAATTGCCTCGA
GGGTGCTTGACCATTTTAACACAACGTGGTGCGGTAACCTGGTACCCGAG
CTCACGAAGTGATCGGGTTGTTTACAACATCGCTGACAAGCCTCGAAAAC
CTAACCCTGATGGCAAACACCGGGGGGGGGGGGGCTTCCAGGGCGTAGAA
ATACCTCAGAAGAAAAGTATACATACTGTGAATACCCGCACGATCATCGA
ACAAGCCGATGCAGCCCGCGAAGATATACCACCAACACGATATCGGACGG
CAGCCTCCACGCAGTTCAACCACATGCCACTATCGGGGCAGCCAAGGCAC
TCCCAACACTAGGCAATGCGGCCGACAGTGACCTATCTACCAACACCTGC
TGAGCCAAGCTCGCCATAACCAAACCAATGTTGGGCATGCTGAAGAACAC
ACACGAAGTAGGCAGTGAAGGAATGCTATCAATATTCGACGAGAAAGCCC
TCACTCAACTATTACAGAAAAACACATATACGAAGGAAGTGAGCGAAGAA
ATGCCATTAAGGCGCATACAAGACTGCCCTCGATCAACTCAGACTGGTAA
ATCATTTAAACAGGGGTCTGCTAGGGGCCCAGATACGGTAGTTGGAGATT
TTCATGGTGCCCCCTTGTTGTGTCATTAGGGGGGCCTCTATTGACATCTG
ATGATAACAATACACTCTGTTTACCATGAAGGAGGTCAACCGACCAGCCC
CCCCTATGCCACGGGGGGAGGACACTGGTTCTGGGCCTTGTCTGACTTCG
AGCGTGTCTACAGTTATCGATACCGGACGGCTGACCGACCAGGGTCAGTC
AAGGCGTAGTCTTGTGCCGAAAAAGAAATCGAATGCGAGAGTACGTACGG
CGAGGCCCCTGCTCCGAGAACTATCTGATCGCATTGTTGGTTGTTGTTGT
TTCTCTTCACAATAAACTCGTGTCAGCTGCTAATCCCAAAATCTAGCGAA
GACTCGGTCCGTGGTCACAAAAATGCTAGAGCCATCAGAAGATCTGAAGA
ACACACACTATTAGCAAGGAAAGGGTACGCAAGCCCGAGGAAGTACACCT
GCAATCCCTGCAGCACGTTTGCATGCTCACAACTGAACTACACGCCCAC

protein sequence of EsuBft970_5a-0001

>EsuBft970_5 ID=EsuBft970_5|Name=EsuBft970_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MTFTLRLEALTAIRDALTRRGGTLTLVTQVKSAKKYRLQLTADLSDGSSS
MWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSN
DTPPPPRGKRPRDCQPAAEILTPPPKRPGYEGAGRPKGTFGRKRLRAMLD
RYRERIELGQVTCGRLEVRDLSSAMLDAAQEVEKHEQDWRPAFLKRQSNR
GVCX

mRNA from alignment at Scaffold_440:429466..432985-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft970_5a-0001 ID=EsuBft970_5a-0001|Name=EsuBft970_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3520bp|location=Sequence derived from alignment at Scaffold_440:429466..432985- (Ectocarpus subulatus male Bft15b)
TGAAAAACAAAAAGTTGGCGGTGGACGCCCTGCACGCCCCATGACCTTCA
CGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCTGACTAGGCGT
GGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGAAAAAGTATCG
TCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGCATGTGGCGCA
GCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACGTGACTGGTCG
GCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTTCTAGCGGCAG
CGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAACGACACACCCC
CGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGCGGCTGAGATC
CTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTGGCCGACCGAA
GGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGATAGATACAGAG
AGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGAAGTGCGGGAC
CTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGAAACATGAGCA
GGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGGGGTGTGTGTN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGTTCGGCATCT
TGTGCTTCCTTACGTACAGACGACACCTACGTATGACTTAATTTATTTTC
TGGTGCTTTCACTTCCAACGACAGCTGTAAGCACTGTGTAATTGCCTCGA
GGGTGCTTGACCATTTTAACACAACGTGGTGCGGTAACCTGGTACCCGAG
CTCACGAAGTGATCGGGTTGTTTACAACATCGCTGACAAGCCTCGAAAAC
CTAACCCTGATGGCAAACACCGGGGGGGGGGGGGCTTCCAGGGCGTAGAA
ATACCTCAGAAGAAAAGTATACATACTGTGAATACCCGCACGATCATCGA
ACAAGCCGATGCAGCCCGCGAAGATATACCACCAACACGATATCGGACGG
CAGCCTCCACGCAGTTCAACCACATGCCACTATCGGGGCAGCCAAGGCAC
TCCCAACACTAGGCAATGCGGCCGACAGTGACCTATCTACCAACACCTGC
TGAGCCAAGCTCGCCATAACCAAACCAATGTTGGGCATGCTGAAGAACAC
ACACGAAGTAGGCAGTGAAGGAATGCTATCAATATTCGACGAGAAAGCCC
TCACTCAACTATTACAGAAAAACACATATACGAAGGAAGTGAGCGAAGAA
ATGCCATTAAGGCGCATACAAGACTGCCCTCGATCAACTCAGACTGGTAA
ATCATTTAAACAGGGGTCTGCTAGGGGCCCAGATACGGTAGTTGGAGATT
TTCATGGTGCCCCCTTGTTGTGTCATTAGGGGGGCCTCTATTGACATCTG
ATGATAACAATACACTCTGTTTACCATGAAGGAGGTCAACCGACCAGCCC
CCCCTATGCCACGGGGGGAGGACACTGGTTCTGGGCCTTGTCTGACTTCG
AGCGTGTCTACAGTTATCGATACCGGACGGCTGACCGACCAGGGTCAGTC
AAGGTAAAAATTCTGAAGAATTCAGGTTGACTGGGCAGTCGTGAGCTGTT
TGATGATCCAGCAACTTTTCTAGCGTCGACGCGGCAGAGAGACCGCATCG
AGTGTCCAAGTCGAGGAGCGGACTCCGGAGGCGTCTCCGCTGACTCGTCG
AGGTCGCGTTCGGGGCTGATCGTTCTTCGTTGCACCGAGGGGGAAGCTGT
GAAGTCTGGCGTTCGAAAGGAGCGTCACGGCGATTGGCGGGATTCATCAA
CACCCTCTTCGCGGCGCGCCAGCAAGATAAAACTCTCCGCGTCAGGCGGG
GGTTCATGTCATCACACAACTCCAGTGTCGAGATCTCTTCGCTGCCTAGC
GGGGGTTTGGGTGAGATCATCAGTAAGACGGTGAAAAGTGCCTTTGACGA
GAGGTGCGACATCGTGCGGTATTTGCGCGTCTACACCATTCGCGTGGCTT
ATACCATTTCTCTGGGGCAAGCTTGCGCCCCCAATATGCGGTGAAATCTC
GACCAGGACTTCTACTTTTCCTGTCTTGAATGTTTGGGTCGAGCTTACTT
GTGTTTGCTAAACGAGTGTCCAGTGTGCATGTGTGTTGCGTAATCTTACA
GCGCACATGATGCATTTTTGGACATCATACAGTTGGAAATTCGCCGCAAG
TTTCTGTTTGGGCATTGGGGGCAGGCGTAGTCTTGTGCCGAAAAAGAAAT
CGAATGCGAGAGTACGTACGGCGAGGCCCCTGCTCCGAGAACTATCTGAT
CGCATTGTTGGTTGTTGTTGTTTCTCTTCACAATAAACTCGTGTCAGCTG
CTAATCCCAAAATCTAGCGAAGACTCGGTCCGTGGTCACAAAAATGCTAG
AGCCATCAGAAGATCTGAAGAACACACACTATTAGCAAGGAAAGGGTACG
CAAGCCCGAGGAAGTACACCTGCAATCCCTGCAGCACGTTTGCATGCTCA
CAACTGAACTACACGCCCAC

Coding sequence (CDS) from alignment at Scaffold_440:429466..432985-

>EsuBft970_5a-0001 ID=EsuBft970_5a-0001|Name=EsuBft970_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=612bp|location=Sequence derived from alignment at Scaffold_440:429466..432985- (Ectocarpus subulatus male Bft15b)
ATGACCTTCACGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCT
GACTAGGCGTGGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGA
AAAAGTATCGTCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGC
ATGTGGCGCAGCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACG
TGACTGGTCGGCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTT
CTAGCGGCAGCGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAAC
GACACACCCCCGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGC
GGCTGAGATCCTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTG
GCCGACCGAAGGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGAT
AGATACAGAGAGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGA
AGTGCGGGACCTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGA
AACATGAGCAGGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGG
GGTGTGTGTNNN