EsuBft970_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft970_3a-0001
Unique NameEsuBft970_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_440contigScaffold_440:466068..466555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft970_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length40
Evalue2.36e-31
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft970_3aEsuBft970_3aEctocarpus subulatus male Bft15bgeneScaffold_440 466068..466555 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_3a-0001-exonEsuBft970_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_440 466068..466074 +
EsuBft970_3a-0001-exonagat-exon-19572Ectocarpus subulatus male Bft15bexonScaffold_440 466155..466555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_3a-0001-cdsEsuBft970_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_440 466068..466074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_3a-0001EsuBft970_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_440 466068..466555 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft970_3a-0001 ID=EsuBft970_3a-0001|Name=EsuBft970_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=408bp|location=Sequence derived from alignment at Scaffold_440:466068..466555+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGTAATGCAGCCGTCAAGGCAGAATTGGGGATCCAATCCCTACG
GTCGGGAAGAGACGCGAGGAAGCTGACATGGCAGTATCGCATGTGCGGGA
TGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAAC
AAAAAGAGGGGTGGACAGCCCACGGAATGGGTCAAGCCTGTAGAGGACGT
ATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTC
TACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAA
CAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGCCTAGAAGTGTACGA
AATGTTGAAGGAGGGAATAGGGTTCAAGGACTACCTACATGGACCAATGG
ATGNNNNN
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protein sequence of EsuBft970_3a-0001

>EsuBft970_3 ID=EsuBft970_3|Name=EsuBft970_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MGSNAAVKAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWAN
KKRGGQPTEWVKPVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREE
QNLRKESKDKEGLEVYEMLKEGIGFKDYLHGPMDXX
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mRNA from alignment at Scaffold_440:466068..466555+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft970_3a-0001 ID=EsuBft970_3a-0001|Name=EsuBft970_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=488bp|location=Sequence derived from alignment at Scaffold_440:466068..466555+ (Ectocarpus subulatus male Bft15b)
ATGGGAAGTAAATGAGAAGGTAGTGAAAGAAGTCGAGGCGGCGAAGATGA
AAGTAGCGAAAATCATCCTGATGCTCCAAGCGCACAGGTAATGCAGCCGT
CAAGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGA
AGCTGACATGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCG
AGAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTGGACAGCC
CACGGAATGGGTCAAGCCTGTAGAGGACGTATGGAAGGGGCTCGACATCG
ACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAG
ATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTAAGGAAAGAATC
CAAGGATAAGGAGGGCCTAGAAGTGTACGAAATGTTGAAGGAGGGAATAG
GGTTCAAGGACTACCTACATGGACCAATGGATGNNNNN
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Coding sequence (CDS) from alignment at Scaffold_440:466068..466555+

>EsuBft970_3a-0001 ID=EsuBft970_3a-0001|Name=EsuBft970_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_440:466068..466555+ (Ectocarpus subulatus male Bft15b)
ATGGGAAGTAATGCAGCCGTCAAGGCAGAATTGGGGATCCAATCCCTACG
GTCGGGAAGAGACGCGAGGAAGCTGACATGGCAGTATCGCATGTGCGGGA
TGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAAC
AAAAAGAGGGGTGGACAGCCCACGGAATGGGTCAAGCCTGTAGAGGACGT
ATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTC
TACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAA
CAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGCCTAGAAGTGTACGA
AATGTTGAAGGAGGGAATAGGGTTCAAGGACTACCTACATGGACCAATGG
ATGNNNNN
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