EsuBft970_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft970_2a-0001
Unique NameEsuBft970_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_440contigScaffold_440:469356..472660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog400682.PAC_15703819
ProteomeIdEsuBft970_2
Protein domainsCoil
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl400682.PAC_15703819|-
Length214
Hectar predicted targeting categoryother localisation
Evalue4.48e-30
EggNOG OGs2F3H4@1|root,2T4GH@2759|Eukaryota,3AMYP@33154|Opisthokonta,3C10E@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft970_2aEsuBft970_2aEctocarpus subulatus male Bft15bgeneScaffold_440 469356..472660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_2a-0001EsuBft970_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_440 469581..472125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_2a-0001-exonagat-exon-19568Ectocarpus subulatus male Bft15bexonScaffold_440 469356..470258 -
EsuBft970_2a-0001-exonagat-exon-19571Ectocarpus subulatus male Bft15bexonScaffold_440 470420..470557 -
EsuBft970_2a-0001-exonagat-exon-19567Ectocarpus subulatus male Bft15bexonScaffold_440 470705..471325 -
EsuBft970_2a-0001-exonagat-exon-19570Ectocarpus subulatus male Bft15bexonScaffold_440 471563..471679 -
EsuBft970_2a-0001-exonagat-exon-19569Ectocarpus subulatus male Bft15bexonScaffold_440 471913..472149 -
EsuBft970_2a-0001-exonEsuBft970_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_440 472536..472660 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_2a-0001-exonagat-three_prime_utr-23647Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_440 469356..469580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_2a-0001-cdsEsuBft970_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_440 469581..470258 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft970_2a-0001-exonagat-five_prime_utr-15386Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_440 472126..472149 -
EsuBft970_2a-0001-exonagat-five_prime_utr-15387Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_440 472536..472660 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft970_2a-0001 ID=EsuBft970_2a-0001|Name=EsuBft970_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2141bp|location=Sequence derived from alignment at Scaffold_440:469356..472660- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGGGTGCTCTGTCTGCAACTTCAAGGAGTTACAGCTCAAGTGGAGCAAC
GTCGCGGACCACTGCAGGAGTCATAGGCATGTGGTGCTGCTGGCCGCGGA
GCCAGCGAAGAAGGCTGAGGACGAGGGCACGCTGCGTGCCTTCGGAATCA
TGTCGAAAGCCAAGGGGGGGATGTACGGTGACACCCTGAGCGACCGTGAC
AAGCTCCTGCAGGTGAAGTTGGTGGCTGGATGTTTGTCGGCAGGCATCCC
GCTTCATGCCCTTGAGGACCCGCAGATGAAGGCCTTCTTCGACTTCGCGA
ACATCCGCGCGCCGGGACGCAGTCATCTCGCCGAGCACGTCCCGTTCCTG
CTGCGCAAAGAGCTTGACACGACCTTGTCGGAGCTTGGGAACGGGAATTA
CACGGTGTGCTTCGACGCCACGCCCTACCGTTGCGAGTGCTTCGGCATCG
GACTACGATTCATCAACCAGAACGGCCAGGTGGTGCAGCGTGTCCTCAAG
ATTGCGATGCTGAAGAAGTCTATGTCGGCTCGAGACATCGTCGGCCAGGT
CAACGACACCTTGGGCGAAGAGTTTAACCTGAGGGCGTCACGCTGCATCG
GCTTCATGCTCGACGGCTGCGCGGCCAACCTGCTTGCTCTCGACTCCCTC
ACGCAGCACATCTACCGCAAGTCGGTGGGCATCCCCTGCTTCTCCCACTT
GTTCAACAACATCGGGACCCGACTGAGATTCCCGGACGTGGACGAGTTCT
TGGGCAAGCTGCACACTCTGCTTTCGCACAGTCCGCAAGCCAAGGCCCTC
TTCCGCGAAATAGTCGGCGTCACAGATCCTCCAACTCCCAACCACCGGTG
GGGTTCGAGGTACGAGCGCGACTACCTCATCGCCATGAACTGGCCAGGTG
TTGTGAAGTTCATCGAGGCGTACAAGAGTAACGACGACGAAAAGTCCAAG
ACGGCGACATGGCTGCGATCGGAGCTAGCTCGGAAGCGGAACGACGGGAA
GGATCAGGTCCTCGTCCTTCGGATGCAGCTGGCTGTACTTGTGGACGTGG
GCAAGATCGTCACCGCTGCCTGCATCTTCCTGGAAGGCGACGAGCCACTG
CTGCACCAAGCGTTCAGCAAAATCGAGAAGTTCCGGTCCCAGCTCGAGCT
AGGCAACGATGGGCTCTTCAAGGAGGACGTGGCTTTGCCTACTCTGGACG
CTGTCATCGCCGCCGGCATTGGCCAGGGAGACGACTTCGGAGCCACCGCC
GACCTTCTCAAGGCTGAGTTTCAAGACGAACTCGTCCCTCTGCGCACTTA
CGCATACGATCAGATCGGGCCCCACGAGGACGCTGAGCGGGCGACAGTAC
TCAAGTATATGGAGGCCGCGCGGCTCATCGACTTCACCTTCATGCGACGT
CACAAGTACAGCGCCAACGAAGTCCGCAGCCTCGCCGTCTTCCCCTTCAT
CTCGGAGGAACAAGTCGACAAGCTTCTCACCGAAAAAGACGACTACTATG
TCGCCGCCCGCGTGACGGACAGAGACTACGATTTTTGGCAGTTCTGGCAG
GACCACAAAGAGAAACTCCCGACGTGGTTCGCCGTAGTGTTGGACATTGC
TCTAGTGCAACCCTCGTCGGCTTTCATGGAGCGCGTGTTTTCGACAGTAC
GCTCTTGCTTAGACTCAAGTCAGAACAGCTGCTTGTCAGACAGGATCATG
GCTGCCCTCATCAAGTACAACGGAGGAAGGGATAGGCATTCTCTGAAGCT
GCGGTATGACAAGGAGGAATTAGCAGAGGAGAAGGAGGGGGAAGCAGAGG
GGGAGGAAGAGGAGGGGGACGGGGAGGAGGAGGAGGAGGAGGAGGAGGGG
CCTGGCGGTGGAGGGGCTAGCGCGGAGGCGGGGGTGGTAGACGTGGACAT
GAGCGACGGGCAATAGACGACATGAGAGATGAAACACGAAAGAGTAGGCT
TCGGAGGCGTATGGTATGAAATAGTACTCTTTTTCTCAATGATGACTAGT
GATAAACCGGTGCATTACTGCGACTAGACACAGAGTTATTTATATCCAAA
GAACACAGATAAATGGACGAGCCCCGATCCATCTTGCGCAACAAGCATAG
GATGCACGAGAGGGTGTTAAAAGGGTACCTGTACGGGCTAG
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protein sequence of EsuBft970_2a-0001

>EsuBft970_2 ID=EsuBft970_2|Name=EsuBft970_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=588bp
MSKAKGGMYGDTLSDRDKLLQVKLVAGCLSAGIPLHALEDPQMKAFFDFA
NIRAPGRSHLAEHVPFLLRKELDTTLSELGNGNYTVCFDATPYRCECFGI
GLRFINQNGQVVQRVLKIAMLKKSMSARDIVGQVNDTLGEEFNLRASRCI
GFMLDGCAANLLALDSLTQHIYRKSVGIPCFSHLFNNIGTRLRFPDVDEF
LGKLHTLLSHSPQAKALFREIVGVTDPPTPNHRWGSRYERDYLIAMNWPG
VVKFIEAYKSNDDEKSKTATWLRSELARKRNDGKDQVLVLRMQLAVLVDV
GKIVTAACIFLEGDEPLLHQAFSKIEKFRSQLELGNDGLFKEDVALPTLD
AVIAAGIGQGDDFGATADLLKAEFQDELVPLRTYAYDQIGPHEDAERATV
LKYMEAARLIDFTFMRRHKYSANEVRSLAVFPFISEEQVDKLLTEKDDYY
VAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTV
RSCLDSSQNSCLSDRIMAALIKYNGGRDRHSLKLRYDKEELAEEKEGEAE
GEEEEGDGEEEEEEEEGPGGGGASAEAGVVDVDMSDGQ
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mRNA from alignment at Scaffold_440:469356..472660-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft970_2a-0001 ID=EsuBft970_2a-0001|Name=EsuBft970_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3305bp|location=Sequence derived from alignment at Scaffold_440:469356..472660- (Ectocarpus subulatus male Bft15b)
TGGGGTGCTCTGTCTGCAACTTCAAGGAGTTACAGCTCAAGTGGAGCAAC
GTCGCGGACCACTGCAGGAGTCATAGGCATGTGGTGCTGCTGGCCGCGGA
GCCAGCGAAGAAGGCTGAGGACGAGGTGAGGAATGGGTAGGGAGTCTACT
GCTGTCTATCTGTCATCTGATTTTTCAAAAATTTAAATTTTTCAGCGGTA
CTCGGTTGTATTCTTATGCTGTAGAAGTACTTCGTAATGTTTCAGTCAAT
ATTTCCATATTACGAAGTTTATTTGTAAGTATGATACATACATGCCTAAA
AATTATCGTTGTATCACTACTGTGTGTTGGTCTCGTATGCTGTTGTGTGT
TCCGTGCAGTGTCGCCTGCTGATCCGTGTTCCGTGGTAGTGTCGACAAAT
GCATTTCCCGTAAAGAAAAACACAAGAAATATACCTGGTGATAACATACA
AAGGACCACAGCACATTTTCGCCCTTGTCCTACTGCCTTCCCGACACTCG
TAATATTGCAGGGCACGCTGCGTGCCTTCGGAATCATGTCGAAAGCCAAG
GGGGGGATGTACGGTGACACCCTGAGCGACCGTGACAAGCTCCTGCAGGT
GAAGTTGGTGGCTGGATGTTTGTCGGCAGGCATCCCGCTTCATGCCCTTG
AGGACCCGCAGATGAAGGCCTTCTTCGACTTCGCGAACATCCGCGCGCCG
GGACGCAGTCATCTCGCCGAGCACGTCCCGTTCCTGCTGCGCAAAGAGGT
GCGTATAGCTGCTCGACTGGTCGAACCCCCTTTCATGATCAAATTTGATT
TCCAAGTGGGTTTAAGCTGCTGCTGGATAAATGGCGCTGCTGTAGTTATT
CCTAGCTGTGTTTTTTTTGGGGGGGGCGGTGGAGTTGCGTGTTGCACGCA
AACCACATTCGACTGCCTCAGCATTCAGTAACGCTTTCTTTTTGTCTTTT
TACTTCCCTCTGCATTTTTGAATATCAACAGCTTGACACGACCTTGTCGG
AGCTTGGGAACGGGAATTACACGGTGTGCTTCGACGCCACGCCCTACCGT
TGCGAGTGCTTCGGCATCGGACTACGATTCATCAACCAGAACGGCCAGGT
ACAGAAAATGATTGCGTTCAATTATAGAAACCGCCGCACCGTTATTCCGT
TATCGCATGCATACGCCGAGCACAGCAGCACAGCAGACAGCATTGAGCAG
ATCGCACCAGCCCAATAGAGCAAGGTTTCATCGGTGCTTTTCAATCTCAC
TCTCAATTATTGTCTCACGACGCCATCCCCGGCCCCTCCCCCCGCTCCCC
ACCACTCCACGCTCTCCCTCGTTTCCTGGCAGCAGGTGGTGCAGCGTGTC
CTCAAGATTGCGATGCTGAAGAAGTCTATGTCGGCTCGAGACATCGTCGG
CCAGGTCAACGACACCTTGGGCGAAGAGTTTAACCTGAGGGCGTCACGCT
GCATCGGCTTCATGCTCGACGGCTGCGCGGCCAACCTGCTTGCTCTCGAC
TCCCTCACGCAGCACATCTACCGCAAGTCGGTGGGCATCCCCTGCTTCTC
CCACTTGTTCAACAACATCGGGACCCGACTGAGATTCCCGGACGTGGACG
AGTTCTTGGGCAAGCTGCACACTCTGCTTTCGCACAGTCCGCAAGCCAAG
GCCCTCTTCCGCGAAATAGTCGGCGTCACAGATCCTCCAACTCCCAACCA
CCGGTGGGGTTCGAGGTACGAGCGCGACTACCTCATCGCCATGAACTGGC
CAGGTGTTGTGAAGTTCATCGAGGCGTACAAGAGTAACGACGACGAAAAG
TCCAAGACGGCGACATGGCTGCGATCGGAGCTAGCTCGGAAGCGGAACGA
CGGGAAGGATCAGGTCCTCGTCCTTCGGATGCAGCTGGCTGTACTTGTGG
ACGTGGGCAAGATCGTCACCGCTGCCTGCATCTTCCTGGAAGGCGACGAG
CCACTGGTACGTACGTTGTCTGTCTGGTTCCTGTAATGTAGTAGGGGTGG
ATATGCGGATGCCCACAAGCATACAAGTACTTTTGTTTACCGAGAACTTT
GCCCGGTTTTTTATGGTCTTTGTGCTTTGCCTGCGCGTTTCCTTTATTTG
CAGCTGCACCAAGCGTTCAGCAAAATCGAGAAGTTCCGGTCCCAGCTCGA
GCTAGGCAACGATGGGCTCTTCAAGGAGGACGTGGCTTTGCCTACTCTGG
ACGCTGTCATCGCCGCCGGCATTGGCCAGGGAGACGACTTCGTAAGTAAA
TTAATTTTACTCCAGTGGTTCATGTACTTTGCAACCACCTGACAATCGTG
TAGTGTACACCGAACAGAACCGCACGTTATCACCCACTCAAAACCCTTCG
CCCTGTCCCGTCCCTCCTTCCTCCCGGCTCCTTTCACTCTCTCAACACGC
AGGGAGCCACCGCCGACCTTCTCAAGGCTGAGTTTCAAGACGAACTCGTC
CCTCTGCGCACTTACGCATACGATCAGATCGGGCCCCACGAGGACGCTGA
GCGGGCGACAGTACTCAAGTATATGGAGGCCGCGCGGCTCATCGACTTCA
CCTTCATGCGACGTCACAAGTACAGCGCCAACGAAGTCCGCAGCCTCGCC
GTCTTCCCCTTCATCTCGGAGGAACAAGTCGACAAGCTTCTCACCGAAAA
AGACGACTACTATGTCGCCGCCCGCGTGACGGACAGAGACTACGATTTTT
GGCAGTTCTGGCAGGACCACAAAGAGAAACTCCCGACGTGGTTCGCCGTA
GTGTTGGACATTGCTCTAGTGCAACCCTCGTCGGCTTTCATGGAGCGCGT
GTTTTCGACAGTACGCTCTTGCTTAGACTCAAGTCAGAACAGCTGCTTGT
CAGACAGGATCATGGCTGCCCTCATCAAGTACAACGGAGGAAGGGATAGG
CATTCTCTGAAGCTGCGGTATGACAAGGAGGAATTAGCAGAGGAGAAGGA
GGGGGAAGCAGAGGGGGAGGAAGAGGAGGGGGACGGGGAGGAGGAGGAGG
AGGAGGAGGAGGGGCCTGGCGGTGGAGGGGCTAGCGCGGAGGCGGGGGTG
GTAGACGTGGACATGAGCGACGGGCAATAGACGACATGAGAGATGAAACA
CGAAAGAGTAGGCTTCGGAGGCGTATGGTATGAAATAGTACTCTTTTTCT
CAATGATGACTAGTGATAAACCGGTGCATTACTGCGACTAGACACAGAGT
TATTTATATCCAAAGAACACAGATAAATGGACGAGCCCCGATCCATCTTG
CGCAACAAGCATAGGATGCACGAGAGGGTGTTAAAAGGGTACCTGTACGG
GCTAG
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Coding sequence (CDS) from alignment at Scaffold_440:469356..472660-

>EsuBft970_2a-0001 ID=EsuBft970_2a-0001|Name=EsuBft970_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1767bp|location=Sequence derived from alignment at Scaffold_440:469356..472660- (Ectocarpus subulatus male Bft15b)
ATGTCGAAAGCCAAGGGGGGGATGTACGGTGACACCCTGAGCGACCGTGA
CAAGCTCCTGCAGGTGAAGTTGGTGGCTGGATGTTTGTCGGCAGGCATCC
CGCTTCATGCCCTTGAGGACCCGCAGATGAAGGCCTTCTTCGACTTCGCG
AACATCCGCGCGCCGGGACGCAGTCATCTCGCCGAGCACGTCCCGTTCCT
GCTGCGCAAAGAGCTTGACACGACCTTGTCGGAGCTTGGGAACGGGAATT
ACACGGTGTGCTTCGACGCCACGCCCTACCGTTGCGAGTGCTTCGGCATC
GGACTACGATTCATCAACCAGAACGGCCAGGTGGTGCAGCGTGTCCTCAA
GATTGCGATGCTGAAGAAGTCTATGTCGGCTCGAGACATCGTCGGCCAGG
TCAACGACACCTTGGGCGAAGAGTTTAACCTGAGGGCGTCACGCTGCATC
GGCTTCATGCTCGACGGCTGCGCGGCCAACCTGCTTGCTCTCGACTCCCT
CACGCAGCACATCTACCGCAAGTCGGTGGGCATCCCCTGCTTCTCCCACT
TGTTCAACAACATCGGGACCCGACTGAGATTCCCGGACGTGGACGAGTTC
TTGGGCAAGCTGCACACTCTGCTTTCGCACAGTCCGCAAGCCAAGGCCCT
CTTCCGCGAAATAGTCGGCGTCACAGATCCTCCAACTCCCAACCACCGGT
GGGGTTCGAGGTACGAGCGCGACTACCTCATCGCCATGAACTGGCCAGGT
GTTGTGAAGTTCATCGAGGCGTACAAGAGTAACGACGACGAAAAGTCCAA
GACGGCGACATGGCTGCGATCGGAGCTAGCTCGGAAGCGGAACGACGGGA
AGGATCAGGTCCTCGTCCTTCGGATGCAGCTGGCTGTACTTGTGGACGTG
GGCAAGATCGTCACCGCTGCCTGCATCTTCCTGGAAGGCGACGAGCCACT
GCTGCACCAAGCGTTCAGCAAAATCGAGAAGTTCCGGTCCCAGCTCGAGC
TAGGCAACGATGGGCTCTTCAAGGAGGACGTGGCTTTGCCTACTCTGGAC
GCTGTCATCGCCGCCGGCATTGGCCAGGGAGACGACTTCGGAGCCACCGC
CGACCTTCTCAAGGCTGAGTTTCAAGACGAACTCGTCCCTCTGCGCACTT
ACGCATACGATCAGATCGGGCCCCACGAGGACGCTGAGCGGGCGACAGTA
CTCAAGTATATGGAGGCCGCGCGGCTCATCGACTTCACCTTCATGCGACG
TCACAAGTACAGCGCCAACGAAGTCCGCAGCCTCGCCGTCTTCCCCTTCA
TCTCGGAGGAACAAGTCGACAAGCTTCTCACCGAAAAAGACGACTACTAT
GTCGCCGCCCGCGTGACGGACAGAGACTACGATTTTTGGCAGTTCTGGCA
GGACCACAAAGAGAAACTCCCGACGTGGTTCGCCGTAGTGTTGGACATTG
CTCTAGTGCAACCCTCGTCGGCTTTCATGGAGCGCGTGTTTTCGACAGTA
CGCTCTTGCTTAGACTCAAGTCAGAACAGCTGCTTGTCAGACAGGATCAT
GGCTGCCCTCATCAAGTACAACGGAGGAAGGGATAGGCATTCTCTGAAGC
TGCGGTATGACAAGGAGGAATTAGCAGAGGAGAAGGAGGGGGAAGCAGAG
GGGGAGGAAGAGGAGGGGGACGGGGAGGAGGAGGAGGAGGAGGAGGAGGG
GCCTGGCGGTGGAGGGGCTAGCGCGGAGGCGGGGGTGGTAGACGTGGACA
TGAGCGACGGGCAATAG
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