EsuBft96_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft96_8a-0001
Unique NameEsuBft96_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:660017..662453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5C3
ProteomeIdEsuBft96_8
Protein domainsPTHR23105
Protein domainsIPR016095
Protein domainsCoil
Protein domainsIPR028364
Protein domainsIPR023674
Protein domainsIPR016094
Ownerapollo_admin@sb-roscoff.fr
Noteribosomal l1 domain-containing protein 1 os:pongo abelii gn:rsl1d1 pe:2 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1713
Hectar predicted targeting categoryother localisation
Evalue1.94e-209
EggNOG OGsKOG1685@1|root,KOG1685@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L1-like
Ec32 orthologEc-14_006980.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRSL1D1
KEGG koko:K11824,ko:K14775
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042981,GO:0043043,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0090342,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000772
Descriptionregulation of cellular senescence
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0050789
GO0005975
GO0005515
GO0003723
GO0043232
GO0044446
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft96_8aEsuBft96_8aEctocarpus subulatus male Bft15bgeneScaffold_576 660017..662453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_8a-0001-exonEsuBft96_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 660017..661408 -
EsuBft96_8a-0001-exonagat-exon-44049Ectocarpus subulatus male Bft15bexonScaffold_576 662133..662453 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_8a-0001-exonagat-three_prime_utr-23645Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 660017..660607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_8a-0001-cdsEsuBft96_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 660608..661408 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_8a-0001-exonagat-five_prime_utr-15384Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 662427..662453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_8a-0001EsuBft96_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 660608..662426 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft96_8a-0001 ID=EsuBft96_8a-0001|Name=EsuBft96_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1713bp|location=Sequence derived from alignment at Scaffold_576:660017..662453- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGAGAGAGAGAGAGACAGCTAGACAAGATGGTTAGCTTCGACGAAGCTCA
AGTACGACGCGCCGCGAGGGCTCTGCTGAAGCACGTCAACAGCTCCGCGG
CGGGGAAGCAGAGTTTGATCGAAGACGAAGGGGAGGTGGTGCTAGCTCAG
ATATCCCTTCACAAGATCCCTGGCGACGTCAAGGCCAAGCCGGTCCCGAT
CGCCATACCGCACCCTTTGCGAAAACGAGAGGACTGCGACATGTGCCTTA
TCGTGAAGGACAATGCGAAGGTCTGGATCAAGGAGATGGCGGAGAAGGAA
CCGGTGGAAGGCCTCACGAAGATCATCAAGCTGGACAAACTCCGTACTCA
GTACAAAGATTTCAAAGATCGCCGACAGCTTCTGTCGCAGTTCGATCTGT
TCCTCGCCGACGACCGCATCCTGCCCATGCTCACCAAGGCCCTCGGTAAG
ACCTTCCTCAAGGTCAAGAAGCAGCCCGTGCCGATAAAGCTCGAGCGCCG
AACGTCTTTCGCCAAGCAGATCGCCCGCGCAAGAGACAGCGCCTTCCTGG
TGGGGTCGCACGGGGACTGCTGGGCCGTGAAGCTGGCGAACACGTCCATG
ACGGAGGACCAGGTGGTAGAGAACCTCATGATCGGGGTTGCTGCGGTGGT
GAAGAAGATCCCTCGGAAGTGGAAGAACGTCAAGGCCATCAACATCAAGT
GCTCCAACTCGGTGGCCCTGCCAGTGTACAGCAACATCGGTGACCTCCCT
CCGGCACCACGCGTCAAGAAGGCGACGGGTGCAGGAAAGGAACAGGCAGC
GGGCGAGAGCGAGGGCAAGGAGTCGAACTCTCATTCGCAGGCCAAGAAGC
GCAAGCCCCGGCCGCTCATTCGGCAGCAGCTCAGCAAACTCAAGGAGGAG
GCCAAGGCAGAGGAGGCAGCGGCGGCTGCCGAAGCGGCGACGGCGAGTGG
TGATACGAAGAGGAGGAAGAAGAAGAGGGCAGCATCAGAGAACGAGGAAC
CAAACGTAGGGGGGGACAGCGGGCGAGAGGAAGAGGGCAGAAAAGTGAAA
AAGATCAAGGCGATTTCCCCCGTGGCGGCGAGCGGGAGTGCGGGCAAGAG
GCGAAAGACGAGTGTTGCATGATTCATGGAAGGTGTAACAGGTCTTGAGT
AGGCTCGATAGATTAGGGTTGATAATGGTGTGGATATCCCCACACTTGTC
TGTGTCTTTGGGCGCCTGTGGTAAAAACCCGTGTATGGTAGAACCTGGGC
TTGGCGCACAACAGCAGTGCATGCCGTCGGTGAGATGCTGGGGTCATGAT
TCTACCGTCGAGGTAAAATTGTGTGAGTCTTGTACCAACTTTTACAGAAT
ATCGTAAGGTGGATGACACGCTAATCTCTTTGTGTTGTGGCAGTCAGTGT
GGCCGGGAATGTGTCTTGTTTGGGTGCAAGTGAGATGCGGACGGAATGAC
AGAAGTTCAAGAAGGCAAGGACGTGCATACAAAAACTGAGGATGTTCGTG
GAAGATTCGTTGCTGTGTGAAGGAGGCTTCTGTCTATGCCGCAGCGGCAC
AGACTACTGCTCCACGGCCATGTTCTTGAGGGCTGCCCCTACCTTTTTGA
CGAGTCGCTTCAAGTTGTGTTTGTTCCCCCGTATATATGAATTGACAATC
CGCCTGGCCGTGGCTGATACATTATACTTACCTCACCTCACTTCGCCAGA
GCAGAGCAGAGCA
back to top

protein sequence of EsuBft96_8a-0001

>EsuBft96_8 ID=EsuBft96_8|Name=EsuBft96_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=364bp
MVSFDEAQVRRAARALLKHVNSSAAGKQSLIEDEGEVVLAQISLHKIPGD
VKAKPVPIAIPHPLRKREDCDMCLIVKDNAKVWIKEMAEKEPVEGLTKII
KLDKLRTQYKDFKDRRQLLSQFDLFLADDRILPMLTKALGKTFLKVKKQP
VPIKLERRTSFAKQIARARDSAFLVGSHGDCWAVKLANTSMTEDQVVENL
MIGVAAVVKKIPRKWKNVKAINIKCSNSVALPVYSNIGDLPPAPRVKKAT
GAGKEQAAGESEGKESNSHSQAKKRKPRPLIRQQLSKLKEEAKAEEAAAA
AEAATASGDTKRRKKKRAASENEEPNVGGDSGREEEGRKVKKIKAISPVA
ASGSAGKRRKTSVA
back to top

mRNA from alignment at Scaffold_576:660017..662453-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft96_8a-0001 ID=EsuBft96_8a-0001|Name=EsuBft96_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2437bp|location=Sequence derived from alignment at Scaffold_576:660017..662453- (Ectocarpus subulatus male Bft15b)
AGAGAGAGAGAGAGACAGCTAGACAAGATGGTTAGCTTCGACGAAGCTCA
AGTACGACGCGCCGCGAGGGCTCTGCTGAAGCACGTCAACAGCTCCGCGG
CGGGGAAGCAGAGTTTGATCGAAGACGAAGGGGAGGTGGTGCTAGCTCAG
ATATCCCTTCACAAGATCCCTGGCGACGTCAAGGCCAAGCCGGTCCCGAT
CGCCATACCGCACCCTTTGCGAAAACGAGAGGACTGCGACATGTGCCTTA
TCGTGAAGGACAATGCGAAGGTCTGGATCAAGGAGATGGCGGAGAAGGAA
CCGGTGGAAGGCCTCACGAAGGTATGATATGGTGTCTGGGTGGCGCAGCT
CACCTGCGGGAGCGTGTGTCTATGTTTTGAAACCAGGAGGTAAGTACTAG
ACACAACAGCAGGGAAGCTGTGTAGCCACAGCTGGCCACCCTCAGATGGA
AACGATACTGTCGAGTCAACTCCATCTCACGTGTGACCATCTTCGATTGC
GGCTGACAGCATGAACCAGTGTCCATCGCCCATGCGGTGGGATTACAGCA
CCATTTGTCCTGTCTGTGTGGTTTTACAGCAGTATTGTAGTCCGCAGAAA
CTGAGAGGACACCCCTGGCTTCGATAATAGCGTTTCCAATAGCTCGCATG
CTTTGTTTGGTCTGTCCATGGCTACCGTGTGCAGCGGTTGGCCCAGACGA
TCCTCTTCCTGCATGCATATGTATCGCGTGTGCCCGAAATGAAATGAAAG
GTCGGTAACATTTGATTGCGCCGCATCGTCGTGGACCGCTCTGTTTTCTT
GACTATTAATAATAAGGACTGCTGTGCTTTTATGCCGACGAACTTGTTCG
GCATTTGCTGATCGTGCGATCACGCTAACACGATAGACGACACAGCATTT
GCAGCTCCCTTCAAGACATGTTGCCACTGCTGTCTTTTGGCTACCGCCCA
GGCAATGGCAGGCACTGCTGTGTAGCTGCTCAACAACTGCTGATCCTATA
TCCTGAATGCTCCCCCCGCCCCGCCCCGCGCCGCTCCCGCCGCAGATCAT
CAAGCTGGACAAACTCCGTACTCAGTACAAAGATTTCAAAGATCGCCGAC
AGCTTCTGTCGCAGTTCGATCTGTTCCTCGCCGACGACCGCATCCTGCCC
ATGCTCACCAAGGCCCTCGGTAAGACCTTCCTCAAGGTCAAGAAGCAGCC
CGTGCCGATAAAGCTCGAGCGCCGAACGTCTTTCGCCAAGCAGATCGCCC
GCGCAAGAGACAGCGCCTTCCTGGTGGGGTCGCACGGGGACTGCTGGGCC
GTGAAGCTGGCGAACACGTCCATGACGGAGGACCAGGTGGTAGAGAACCT
CATGATCGGGGTTGCTGCGGTGGTGAAGAAGATCCCTCGGAAGTGGAAGA
ACGTCAAGGCCATCAACATCAAGTGCTCCAACTCGGTGGCCCTGCCAGTG
TACAGCAACATCGGTGACCTCCCTCCGGCACCACGCGTCAAGAAGGCGAC
GGGTGCAGGAAAGGAACAGGCAGCGGGCGAGAGCGAGGGCAAGGAGTCGA
ACTCTCATTCGCAGGCCAAGAAGCGCAAGCCCCGGCCGCTCATTCGGCAG
CAGCTCAGCAAACTCAAGGAGGAGGCCAAGGCAGAGGAGGCAGCGGCGGC
TGCCGAAGCGGCGACGGCGAGTGGTGATACGAAGAGGAGGAAGAAGAAGA
GGGCAGCATCAGAGAACGAGGAACCAAACGTAGGGGGGGACAGCGGGCGA
GAGGAAGAGGGCAGAAAAGTGAAAAAGATCAAGGCGATTTCCCCCGTGGC
GGCGAGCGGGAGTGCGGGCAAGAGGCGAAAGACGAGTGTTGCATGATTCA
TGGAAGGTGTAACAGGTCTTGAGTAGGCTCGATAGATTAGGGTTGATAAT
GGTGTGGATATCCCCACACTTGTCTGTGTCTTTGGGCGCCTGTGGTAAAA
ACCCGTGTATGGTAGAACCTGGGCTTGGCGCACAACAGCAGTGCATGCCG
TCGGTGAGATGCTGGGGTCATGATTCTACCGTCGAGGTAAAATTGTGTGA
GTCTTGTACCAACTTTTACAGAATATCGTAAGGTGGATGACACGCTAATC
TCTTTGTGTTGTGGCAGTCAGTGTGGCCGGGAATGTGTCTTGTTTGGGTG
CAAGTGAGATGCGGACGGAATGACAGAAGTTCAAGAAGGCAAGGACGTGC
ATACAAAAACTGAGGATGTTCGTGGAAGATTCGTTGCTGTGTGAAGGAGG
CTTCTGTCTATGCCGCAGCGGCACAGACTACTGCTCCACGGCCATGTTCT
TGAGGGCTGCCCCTACCTTTTTGACGAGTCGCTTCAAGTTGTGTTTGTTC
CCCCGTATATATGAATTGACAATCCGCCTGGCCGTGGCTGATACATTATA
CTTACCTCACCTCACTTCGCCAGAGCAGAGCAGAGCA
back to top

Coding sequence (CDS) from alignment at Scaffold_576:660017..662453-

>EsuBft96_8a-0001 ID=EsuBft96_8a-0001|Name=EsuBft96_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1095bp|location=Sequence derived from alignment at Scaffold_576:660017..662453- (Ectocarpus subulatus male Bft15b)
ATGGTTAGCTTCGACGAAGCTCAAGTACGACGCGCCGCGAGGGCTCTGCT
GAAGCACGTCAACAGCTCCGCGGCGGGGAAGCAGAGTTTGATCGAAGACG
AAGGGGAGGTGGTGCTAGCTCAGATATCCCTTCACAAGATCCCTGGCGAC
GTCAAGGCCAAGCCGGTCCCGATCGCCATACCGCACCCTTTGCGAAAACG
AGAGGACTGCGACATGTGCCTTATCGTGAAGGACAATGCGAAGGTCTGGA
TCAAGGAGATGGCGGAGAAGGAACCGGTGGAAGGCCTCACGAAGATCATC
AAGCTGGACAAACTCCGTACTCAGTACAAAGATTTCAAAGATCGCCGACA
GCTTCTGTCGCAGTTCGATCTGTTCCTCGCCGACGACCGCATCCTGCCCA
TGCTCACCAAGGCCCTCGGTAAGACCTTCCTCAAGGTCAAGAAGCAGCCC
GTGCCGATAAAGCTCGAGCGCCGAACGTCTTTCGCCAAGCAGATCGCCCG
CGCAAGAGACAGCGCCTTCCTGGTGGGGTCGCACGGGGACTGCTGGGCCG
TGAAGCTGGCGAACACGTCCATGACGGAGGACCAGGTGGTAGAGAACCTC
ATGATCGGGGTTGCTGCGGTGGTGAAGAAGATCCCTCGGAAGTGGAAGAA
CGTCAAGGCCATCAACATCAAGTGCTCCAACTCGGTGGCCCTGCCAGTGT
ACAGCAACATCGGTGACCTCCCTCCGGCACCACGCGTCAAGAAGGCGACG
GGTGCAGGAAAGGAACAGGCAGCGGGCGAGAGCGAGGGCAAGGAGTCGAA
CTCTCATTCGCAGGCCAAGAAGCGCAAGCCCCGGCCGCTCATTCGGCAGC
AGCTCAGCAAACTCAAGGAGGAGGCCAAGGCAGAGGAGGCAGCGGCGGCT
GCCGAAGCGGCGACGGCGAGTGGTGATACGAAGAGGAGGAAGAAGAAGAG
GGCAGCATCAGAGAACGAGGAACCAAACGTAGGGGGGGACAGCGGGCGAG
AGGAAGAGGGCAGAAAAGTGAAAAAGATCAAGGCGATTTCCCCCGTGGCG
GCGAGCGGGAGTGCGGGCAAGAGGCGAAAGACGAGTGTTGCATGA
back to top