EsuBft96_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft96_23a-0001
Unique NameEsuBft96_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:854668..858237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5A6
ProteomeIdEsuBft96_23
Protein domainsIPR027417
Protein domainsIPR018525
Protein domainsPTHR11630
Protein domainsIPR012340
Protein domainsIPR001208
Ownerapollo_admin@sb-roscoff.fr
Notedna replication licensing factor mcm5 os:arabidopsis thaliana gn:mcm5 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1686
Hectar predicted targeting categoryother localisation
Evalue9.47e-150
EggNOG OGsCOG1241@1|root,KOG0481@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_006810.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameMCM5
KEGG koko:K02209,ko:K11592
KEGG Pathwayko03030,ko04110,ko04111,ko04113,ko05206,map03030,map04110,map04111,map04113,map05206
KEGG ModuleM00285
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000280,GO:0000347,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000781,GO:0000784,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006268,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006342,GO:0006343,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030174,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031935,GO:0031936,GO:0031938,GO:0031939,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035825,GO:0036387,GO:0036388,GO:0040029,GO:0042023,GO:0042555,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045132,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051095,GO:0051097,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051336,GO:0051346,GO:0051716,GO:0060255,GO:0060968,GO:0060969,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098687,GO:0098813,GO:0140013,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902292,GO:1902299,GO:1902315,GO:1902679,GO:1902680,GO:1902969,GO:1902975,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990837,GO:2000112,GO:2000113,GO:2001141,GO:2001251
EC3.6.4.12
DescriptionDNA replication origin binding
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0010389
GO0003682
GO0006306
GO0003688
GO0005524
GO0006268
GO0006267
GO0000911
GO0006343
GO0006200
GO0030174
GO0031261
GO0042555
GO0008283
GO0017116
GO0051567
GO0031298
GO0031939
GO0009909
GO0003697
GO0003333
GO0005656
GO0000785
GO0000784
GO0005737
GO0000727
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft96_23aEsuBft96_23aEctocarpus subulatus male Bft15bgeneScaffold_576 854668..858237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_23a-0001EsuBft96_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 854668..857436 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_23a-0001-exonagat-exon-44166Ectocarpus subulatus male Bft15bexonScaffold_576 854668..854707 +
EsuBft96_23a-0001-exonEsuBft96_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 854925..854992 +
EsuBft96_23a-0001-exonagat-exon-44164Ectocarpus subulatus male Bft15bexonScaffold_576 855228..855413 +
EsuBft96_23a-0001-exonagat-exon-44168Ectocarpus subulatus male Bft15bexonScaffold_576 855733..855944 +
EsuBft96_23a-0001-exonagat-exon-44165Ectocarpus subulatus male Bft15bexonScaffold_576 856477..856561 +
EsuBft96_23a-0001-exonagat-exon-44167Ectocarpus subulatus male Bft15bexonScaffold_576 857143..858237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_23a-0001-cdsEsuBft96_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 854668..854707 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_23a-0001-exonagat-three_prime_utr-23631Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 857437..858237 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft96_23a-0001 ID=EsuBft96_23a-0001|Name=EsuBft96_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1686bp|location=Sequence derived from alignment at Scaffold_576:854668..858237+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAACTGGCAAAGGGTCGCCCGAAAGTCGTGCCAGGTCAGGCACC
GTTCGTGATTGTACCAGATGAATGCATCTATGTGGACCAGCAGACGCTCA
AGCTTCAGGAGAGCCCGGAAGTCGTCCCGACCGGCGAGATGCCTCGCAAC
ATCATCGTGGTTCTCGACCGAAACCTCGTGGACAAGGTGTCCCCTGGTAC
CCGCGTCTCCATCATGGGAATCGCCTCGTTGTACAACTCCGCCGCTGCGA
AGAAGCAGGTCGGAGGTGTGGCCATTCGCACTCCCTTCATGCAGGTTGTG
GGTATCGCGGTGGAAAGCGAGGGGGCTGGTCGCGCGTCCGTCTCCTTCAC
GCCGGCAGAAGAGGAAAAGTTCCTTGCCATGTCGCGAACGCCAGACATCT
ACCAGAAGATGGCGTCGTCGATCTCTCCCTCCATCTCCGGAGACTACACC
GTCGACATCAAGCGAGCGCTGGCTTGCTTGCTCTTCGGGGGGTCGCGAAA
GGTGCGCACTCGTCTTCGCGGAGACATCAACGTGCTCCTGCTGGGAGACC
CGTCTACCGCCAAGAGCCAGTTCCTCAAGTTCATAGAAAAGGTGGCTCCC
GTTGGGGTGTATACGTCTGGAAAGGGCAGCAGCGCAGCGGGTCTCACGGC
CTCGGTAATCAAGGACTCTAGAGGGGAGTTCTACCTGGAGGGGGGTGCCA
TGGTGCTGGCCGATGGAGGAGTTGTTTGCATCGACGAATTCGACAAGGCG
AGGGGGCTTTGGCAGAGTTTGAGGGGGCGGAGGGGGGCGGGGGAGGGGAG
GCAGACTGCTTTGCTTTGTCCCGCTTGCTTCCCACGGCACTTGGCGAAGG
AAAAACATATTAACCTGTTGCTGGTTGCTGTCTAGGTAAAGTGATGGGAA
TGACTAGCTCGTGGCAATGGCGGCAAAACGCTGGCCCACCCCAAAGGATG
AGGATTAGACGTGAAAGCAGCGCCCTCGATGTTGTGGTAGAACCGCGATC
ACCCCACCTCCATCCTCTCGACAGTTATTCGGCAGATAAGCGTTCTCTAG
TACTTTTTGAAACCCAAGCTATTCCGGCGCTGAGGACCATCATGTATGTA
GCAGCCTGTATTGTTGTGCGTACTTTGGATCCTTCCCCCGGGTGCTTATG
CCGCAGAATATTCACCGGTACCCTCACTTTTCGGGCGCTCCGTACCTGGT
GTCATCGTTGCCCCATCATATTTCATATTTTATCTTTCATCTTTCATCTT
GTGACACTAAGATGAGGGAGTCGGACCGCGTTGCGATTCACGAGGCGATG
GAGCAGCAGACCATTTCGGTGGCGAAAGCGGGCATCACCACGATCCTCAA
CAGGCATGTGTGACGCTCGCTAACCCTTACCACGGAGGACGACTTAGGGC
CTTGATTGAAAATATTGACTGAACCACCTGTTAGGCATTAACATCATACA
TAAGTACATGGTTCTTGATGCTTGTTCCAATCTGTTTGATATGACACTAT
GCTACGTGTATCCATTTAATCCGCATGACGTTCATTCGATTCACGAAAGA
TGGGCCGGGCCCATTGTTTCGCTCTCGGCTTCGGTATCGCATTGCTGCTA
CTAGATTTCGACGATTTACGCTATCTACGCTTGCTACGAAGTTCCTCTCG
GTCGCTGCCGTACCTCGCACATACTGTAATTATTTG
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protein sequence of EsuBft96_23a-0001

>EsuBft96_23 ID=EsuBft96_23|Name=EsuBft96_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=294bp
MAKLAKGRPKVVPGQAPFVIVPDECIYVDQQTLKLQESPEVVPTGEMPRN
IIVVLDRNLVDKVSPGTRVSIMGIASLYNSAAAKKQVGGVAIRTPFMQVV
GIAVESEGAGRASVSFTPAEEEKFLAMSRTPDIYQKMASSISPSISGDYT
VDIKRALACLLFGGSRKVRTRLRGDINVLLLGDPSTAKSQFLKFIEKVAP
VGVYTSGKGSSAAGLTASVIKDSRGEFYLEGGAMVLADGGVVCIDEFDKA
RGLWQSLRGRRGAGEGRQTALLCPACFPRHLAKEKHINLLLVAV
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mRNA from alignment at Scaffold_576:854668..858237+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft96_23a-0001 ID=EsuBft96_23a-0001|Name=EsuBft96_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3570bp|location=Sequence derived from alignment at Scaffold_576:854668..858237+ (Ectocarpus subulatus male Bft15b)
ATGGCAAAACTGGCAAAGGGTCGCCCGAAAGTCGTGCCAGGTGATGGTGC
TGGGCGCAAAGGGATTTTGGGATGTGAACTCGGCAAGAGCGACTGAGCGG
TCGGTAGACTTTTTTTTTCAGTCACGCAGTCACGTGCAAGTGCGCCGGCA
GTTCATGCTGTAGCGCGCAACCTGCGCCCCAATTTCCCGTCTCATGTTTC
CTGTTTCCTGTGGCCGTCGCCTCCTTTATTCCCTTCCTTCGTGAAACGTG
ACAACAGGTCAGGCACCGTTCGTGATTGTACCAGATGAATGCATCTATGT
GGACCAGCAGACGCTCAAGCTTCAGGTATGTGTCTGTATGCCTACGCGTG
TACTGCAGATGGGTGGCCTGATAAGCACGTCCTTAGCCGAAGCGGCTGAA
CTCTTATCGCATCGTTCTGTGTGACGCAGGCAGCGCTTCCTGCCGTCTAC
AGCTTTCAAAACACTGCGTCACCGTCGGCGCCTTGCCATGCACGCCCCTC
CGCGCACAACATGTCGCACCGCTCATCGCTTGTCGCTGGCCGTTTTATCG
CGTGCTGCAGGAGAGCCCGGAAGTCGTCCCGACCGGCGAGATGCCTCGCA
ACATCATCGTGGTTCTCGACCGAAACCTCGTGGACAAGGTGTCCCCTGGT
ACCCGCGTCTCCATCATGGGAATCGCCTCGTTGTACAACTCCGCCGCTGC
GAAGAAGCAGGTCGGAGGTGTGGCCATTCGCACTCCCTTCATGCAGGTGG
GTACCTTACATGGGAGGACTAAATGCCGCGAGGAGCACGTTTCTGGCGGC
TTGCGGGGAGATTAGGTTAGATGTTGCCACCTTTGCGAGTGCTGTGGAAC
CAGCATGATTTGGAAGACCACCTCAACCGATGTCGTCGTCGCACATTGGT
TCCTACAGCAGTCTAGGCTACTTTGGTGCACATCAGTATTTTTGTGCGTT
TTTCACGCCGTGCGCGGCCTTGGTCTAGCCCCCTCTTGTGTGTCAAACCA
AAGCACCGCCAAACCTTCGCGCGCCTGATCTATGGCCACAACGACGATGA
CTACGACGAATGCAGGTTGTGGGTATCGCGGTGGAAAGCGAGGGGGCTGG
TCGCGCGTCCGTCTCCTTCACGCCGGCAGAAGAGGAAAAGTTCCTTGCCA
TGTCGCGAACGCCAGACATCTACCAGAAGATGGCGTCGTCGATCTCTCCC
TCCATCTCCGGAGACTACACCGTCGACATCAAGCGAGCGCTGGCTTGCTT
GCTCTTCGGGGGGTCGCGAAAGGTGCGGTATGTGGCACGGCACGTGGTAC
GATACGTTCAAAGTCTGTTGGTGGGAGTTTCCATCCGGAGTGTTGCGGAA
GCCCAGCCGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGTG
TGTTCTTGTTGTGCCGTGTGGTAGAGCGAGAGAGGCGTGTCCGGGGAGAG
TCATTGTGATCGATCGAACCTCATCCAATGGTCTCTTCTGTGAGCTGCAT
GTTGTTCCGACAAAGCTTCACTCCAGAAATGCAGTAGGGTGGACATGAGA
TAGATGGGCTCCAAACGCAGAGCGCTCCAGAATCGCTCTTCGCAGTCGTT
TCCGGCATCTTGTGGCTCAACCAAGATCTTTCCCTGATCTCTCGCTCTTT
CTCTCTCTCTCGCTGACCATTCAATAGGCATTCTTGCGGTTGTTCGTGTG
TCTTGTTTGAGTGACATCCCCAAGCCTGCTCTGCTGCTCGCCTAACTCGT
GGCGTATCCGTGCTCATCCTCGTTAATCCTTACTGCCATTTTCAGCACCT
GCCGGACAGCACTCGTCTTCGCGGAGACATCAACGTGCTCCTGCTGGGAG
ACCCGTCTACCGCCAAGAGCCAGTTCCTCAAGTTCATAGAAAAGGTGAAA
CCGATTTAATTAAAACTCGATGCCTATGCACGCACACGAGTGTACGGCAT
ACTGCTGTACCTTACTGCCTGTACCTCAGGTTGTCCGAGGGGTCGAGCAG
TCGTCTCTGTGTCGTTCATAGTCCCAGTTCTTGGAATGTACACGAAAGTT
TTTTGATAGCATGGACGTACGCATGGCATTTAGTGCTATGTACCCTGACG
TTGCGGTGATGTCTCCCGGTTCGTCAATCTCATACCACGAAACACTGAAG
AATCTCTAGAGAAAACTTCAAGTCGACACGGCGAAAAAGGGGAGCTGCAT
TGGCTACTATATGTTTATCCATATGATACAGGATGATAGTATGATGGTAT
GATAGATATGATGTGATCCTCGATCCGCTTTTTTTCTTGTGGGTTCCGTC
GGTGCGACACTGCTAGCCGGGGCTTTACGTCTCAAAATCAAATCAGGTTG
GTCAGGGGCTGATTAGTCTTGTGGGTTGATTTCATTCCGGTGTCTAAATT
GCGCGCAATGGCGCTGTGGGTACCTCATCAAGTTTCTTGTCCCGTTGATT
GCGCCTGAATTCCTCCTCTTTGAAGGTGGCTCCCGTTGGGGTGTATACGT
CTGGAAAGGGCAGCAGCGCAGCGGGTCTCACGGCCTCGGTAATCAAGGAC
TCTAGAGGGGAGTTCTACCTGGAGGGGGGTGCCATGGTGCTGGCCGATGG
AGGAGTTGTTTGCATCGACGAATTCGACAAGGCGAGGGGGCTTTGGCAGA
GTTTGAGGGGGCGGAGGGGGGCGGGGGAGGGGAGGCAGACTGCTTTGCTT
TGTCCCGCTTGCTTCCCACGGCACTTGGCGAAGGAAAAACATATTAACCT
GTTGCTGGTTGCTGTCTAGGTAAAGTGATGGGAATGACTAGCTCGTGGCA
ATGGCGGCAAAACGCTGGCCCACCCCAAAGGATGAGGATTAGACGTGAAA
GCAGCGCCCTCGATGTTGTGGTAGAACCGCGATCACCCCACCTCCATCCT
CTCGACAGTTATTCGGCAGATAAGCGTTCTCTAGTACTTTTTGAAACCCA
AGCTATTCCGGCGCTGAGGACCATCATGTATGTAGCAGCCTGTATTGTTG
TGCGTACTTTGGATCCTTCCCCCGGGTGCTTATGCCGCAGAATATTCACC
GGTACCCTCACTTTTCGGGCGCTCCGTACCTGGTGTCATCGTTGCCCCAT
CATATTTCATATTTTATCTTTCATCTTTCATCTTGTGACACTAAGATGAG
GGAGTCGGACCGCGTTGCGATTCACGAGGCGATGGAGCAGCAGACCATTT
CGGTGGCGAAAGCGGGCATCACCACGATCCTCAACAGGCATGTGTGACGC
TCGCTAACCCTTACCACGGAGGACGACTTAGGGCCTTGATTGAAAATATT
GACTGAACCACCTGTTAGGCATTAACATCATACATAAGTACATGGTTCTT
GATGCTTGTTCCAATCTGTTTGATATGACACTATGCTACGTGTATCCATT
TAATCCGCATGACGTTCATTCGATTCACGAAAGATGGGCCGGGCCCATTG
TTTCGCTCTCGGCTTCGGTATCGCATTGCTGCTACTAGATTTCGACGATT
TACGCTATCTACGCTTGCTACGAAGTTCCTCTCGGTCGCTGCCGTACCTC
GCACATACTGTAATTATTTG
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Coding sequence (CDS) from alignment at Scaffold_576:854668..858237+

>EsuBft96_23a-0001 ID=EsuBft96_23a-0001|Name=EsuBft96_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=885bp|location=Sequence derived from alignment at Scaffold_576:854668..858237+ (Ectocarpus subulatus male Bft15b)
ATGGCAAAACTGGCAAAGGGTCGCCCGAAAGTCGTGCCAGGTCAGGCACC
GTTCGTGATTGTACCAGATGAATGCATCTATGTGGACCAGCAGACGCTCA
AGCTTCAGGAGAGCCCGGAAGTCGTCCCGACCGGCGAGATGCCTCGCAAC
ATCATCGTGGTTCTCGACCGAAACCTCGTGGACAAGGTGTCCCCTGGTAC
CCGCGTCTCCATCATGGGAATCGCCTCGTTGTACAACTCCGCCGCTGCGA
AGAAGCAGGTCGGAGGTGTGGCCATTCGCACTCCCTTCATGCAGGTTGTG
GGTATCGCGGTGGAAAGCGAGGGGGCTGGTCGCGCGTCCGTCTCCTTCAC
GCCGGCAGAAGAGGAAAAGTTCCTTGCCATGTCGCGAACGCCAGACATCT
ACCAGAAGATGGCGTCGTCGATCTCTCCCTCCATCTCCGGAGACTACACC
GTCGACATCAAGCGAGCGCTGGCTTGCTTGCTCTTCGGGGGGTCGCGAAA
GGTGCGCACTCGTCTTCGCGGAGACATCAACGTGCTCCTGCTGGGAGACC
CGTCTACCGCCAAGAGCCAGTTCCTCAAGTTCATAGAAAAGGTGGCTCCC
GTTGGGGTGTATACGTCTGGAAAGGGCAGCAGCGCAGCGGGTCTCACGGC
CTCGGTAATCAAGGACTCTAGAGGGGAGTTCTACCTGGAGGGGGGTGCCA
TGGTGCTGGCCGATGGAGGAGTTGTTTGCATCGACGAATTCGACAAGGCG
AGGGGGCTTTGGCAGAGTTTGAGGGGGCGGAGGGGGGCGGGGGAGGGGAG
GCAGACTGCTTTGCTTTGTCCCGCTTGCTTCCCACGGCACTTGGCGAAGG
AAAAACATATTAACCTGTTGCTGGTTGCTGTCTAG
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