EsuBft96_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft96_17a-0001
Unique Name	EsuBft96_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_576	contig	Scaffold_576:771356..774380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft96_17
Protein domains	PTHR25952
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	60
Evalue	3.93e-14
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft96_17a	EsuBft96_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_576 771356..774380 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_17a-0001-exon	agat-exon-44100	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 771356..771413 +
EsuBft96_17a-0001-exon	EsuBft96_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 773833..774380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_17a-0001-cds	EsuBft96_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_576 771356..771413 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_17a-0001	EsuBft96_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_576 771356..774380 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_576:771356..774380+
coding sequence from alignment at Scaffold_576:771356..774380+

spliced messenger RNA

>EsuBft96_17a-0001 ID=EsuBft96_17a-0001|Name=EsuBft96_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=606bp|location=Sequence derived from alignment at Scaffold_576:771356..774380+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGNATGGGATCGAGGAATGCCCGTTCACGGTCAGCGCCGCCGGCCAGA
CGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCG
GACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAA
GTGCTACCGCCGGAAGAGTGCTTCGATGTACGACAGGCGACGGGTCGACC
GCAAGCTCAAGATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTG
TATGGGTGCGCCTCGTGGAGCCTAACAGCAGAGCACTACACGAAGCTCAT
TGGGACCCATCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGA
AACGCTCAGACCGCCCCCTGTCCTTTGCCCGGGCCCTCATCCAGGCAGGC
TGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGC
GGGCTTTGTTATGTGCATGGAGGACAACCGCCTCCCCAAGCGCACGCTGT
CAGGAGCGATGGCGGGGGTTCGGGCCCATTCACGATGGCCAGATGCTCTA
CTGTAG

protein sequence of EsuBft96_17a-0001

>EsuBft96_17 ID=EsuBft96_17|Name=EsuBft96_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=201bp
MTVMQICSATGCDVIGLQXGIEECPFTVSAAGQTYKQTDRFVYLGRTISA
DGKADREITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLL
YGCASWSLTAEHYTKLIGTHRQFLTRCIGWSKRKRSDRPLSFARALIQAG
CEETIEATVRKRRLCFAGFVMCMEDNRLPKRTLSGAMAGVRAHSRWPDAL
L

mRNA from alignment at Scaffold_576:771356..774380+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft96_17a-0001 ID=EsuBft96_17a-0001|Name=EsuBft96_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3025bp|location=Sequence derived from alignment at Scaffold_576:771356..774380+ (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGNATGGTACGTCCACAAATTGGCCGCACCTGCGCAGTAGCTTTCGTG
GTGGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGACGGTGATGT
TAACGCCAAGGACTCCTTCTGGACTGCTCTCGAGCAGCGATCCGAGATGT
TCACAGCCGTGACCATCTCGTGGTGCTAATGGGCGCCAACGCACGCACTG
GTAGGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGA
CGCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGNNNNNNN
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NNNNNNNNNNNNNNNNNNNNCCGAAAGGGATCGAGGAATGCCCGTTCACG
GTCAGCGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCT
CGGACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCC
GCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGAAGAGTGCTTCGATGTAC
GACAGGCGACGGGTCGACCGCAAGCTCAAGATCCGGCTACTCCAGGCTGA
AGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCAG
AGCACTACACGAAGCTCATTGGGACCCATCGCCAGTTCCTTACACGGTGC
ATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTTTGCCCG
GGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA
AACGGAGACTGTGTTTCGCGGGCTTTGTTATGTGCATGGAGGACAACCGC
CTCCCCAAGCGCACGCTGTCAGGAGCGATGGCGGGGGTTCGGGCCCATTC
ACGATGGCCAGATGCTCTACTGTAG

Coding sequence (CDS) from alignment at Scaffold_576:771356..774380+

>EsuBft96_17a-0001 ID=EsuBft96_17a-0001|Name=EsuBft96_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=606bp|location=Sequence derived from alignment at Scaffold_576:771356..774380+ (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGNATGGGATCGAGGAATGCCCGTTCACGGTCAGCGCCGCCGGCCAGA
CGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCG
GACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAA
GTGCTACCGCCGGAAGAGTGCTTCGATGTACGACAGGCGACGGGTCGACC
GCAAGCTCAAGATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTG
TATGGGTGCGCCTCGTGGAGCCTAACAGCAGAGCACTACACGAAGCTCAT
TGGGACCCATCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGA
AACGCTCAGACCGCCCCCTGTCCTTTGCCCGGGCCCTCATCCAGGCAGGC
TGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGC
GGGCTTTGTTATGTGCATGGAGGACAACCGCCTCCCCAAGCGCACGCTGT
CAGGAGCGATGGCGGGGGTTCGGGCCCATTCACGATGGCCAGATGCTCTA
CTGTAG