EsuBft96_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft96_13a-0001
Unique NameEsuBft96_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:716681..717256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5B6
ProteomeIdEsuBft96_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length31
Hectar predicted targeting categoryother localisation
Evalue1.97e-47
EggNOG OGsCOG5059@1|root,KOG0245@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameSTARD9
KEGG koko:K11511,ko:K16491,ko:K17916
KEGG Pathwayko03460,map03460
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko00001,ko03036,ko03400,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft96_13aEsuBft96_13aEctocarpus subulatus male Bft15bgeneScaffold_576 716681..717256 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_13a-0001-exonagat-exon-44086Ectocarpus subulatus male Bft15bexonScaffold_576 716681..716863 -
EsuBft96_13a-0001-exonEsuBft96_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 717128..717256 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_13a-0001-exonagat-three_prime_utr-23624Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 716681..716701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_13a-0001-cdsEsuBft96_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 716702..716863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_13a-0001EsuBft96_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 716702..717256 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft96_13a-0001 ID=EsuBft96_13a-0001|Name=EsuBft96_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=312bp|location=Sequence derived from alignment at Scaffold_576:716681..717256- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTAGAGGTGGAAATGCCACACCCAGACATGCCGGGCATGAAACA
GAAGGGAAGAGTATACGTGTGCGATTTGGCCGGGACTGAACCTGCGGGCG
ACATCGTGTACGCTTTGTACGAGAAAAAGACATTTGACAGCGGCGATATC
GAGTATAAGTTTCTCGGACCGCACCAAGACCAACGCAAGACGAAAGAGTT
GCAAGACCAGGGCAAGAAAATTAACCTCTCCCTCAGCGAGGTACAGGCGT
GGATCCGGGTGCTACCACGCAACATGCACGGCGGCCCTTGATGGGTTGAC
GTTCCGACTTAG
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protein sequence of EsuBft96_13a-0001

>EsuBft96_13 ID=EsuBft96_13|Name=EsuBft96_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MTLEVEMPHPDMPGMKQKGRVYVCDLAGTEPAGDIVYALYEKKTFDSGDI
EYKFLGPHQDQRKTKELQDQGKKINLSLSEVQAWIRVLPRNMHGGP
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mRNA from alignment at Scaffold_576:716681..717256-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft96_13a-0001 ID=EsuBft96_13a-0001|Name=EsuBft96_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=576bp|location=Sequence derived from alignment at Scaffold_576:716681..717256- (Ectocarpus subulatus male Bft15b)
ATGACGCTAGAGGTGGAAATGCCACACCCAGACATGCCGGGCATGAAACA
GAAGGGAAGAGTATACGTGTGCGATTTGGCCGGGACTGAACCTGCGGGCG
ACATCGTGTACGCTTTGTACGAGAAAAAGGTGATTTGTGCGATCCTACCC
CACGTGTTTCTTTCATACGAACCAAGTGAATTTTCAAACAAGAGCGGCAA
TGCTCTTGGGAGTCGTGAGACGAGCCCATTAGATGCCACGGCTCTCTCTG
CGAGTGCCAAAAGAAATCAAGTGTTGAATGATTTCAAAAGACAACATGAA
GCATGAGAACTTTCTGAAGCCATATGTTACGAATGAATGTGTACCCTGAC
CCTAAACAACACCTTCCCCCTCTGCCTGGATGCATCCTCTCAGACATTTG
ACAGCGGCGATATCGAGTATAAGTTTCTCGGACCGCACCAAGACCAACGC
AAGACGAAAGAGTTGCAAGACCAGGGCAAGAAAATTAACCTCTCCCTCAG
CGAGGTACAGGCGTGGATCCGGGTGCTACCACGCAACATGCACGGCGGCC
CTTGATGGGTTGACGTTCCGACTTAG
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Coding sequence (CDS) from alignment at Scaffold_576:716681..717256-

>EsuBft96_13a-0001 ID=EsuBft96_13a-0001|Name=EsuBft96_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_576:716681..717256- (Ectocarpus subulatus male Bft15b)
ATGACGCTAGAGGTGGAAATGCCACACCCAGACATGCCGGGCATGAAACA
GAAGGGAAGAGTATACGTGTGCGATTTGGCCGGGACTGAACCTGCGGGCG
ACATCGTGTACGCTTTGTACGAGAAAAAGACATTTGACAGCGGCGATATC
GAGTATAAGTTTCTCGGACCGCACCAAGACCAACGCAAGACGAAAGAGTT
GCAAGACCAGGGCAAGAAAATTAACCTCTCCCTCAGCGAGGTACAGGCGT
GGATCCGGGTGCTACCACGCAACATGCACGGCGGCCCTTGA
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