EsuBft96_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft96_10a-0001
Unique NameEsuBft96_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:684860..687566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5B8
ProteomeIdEsuBft96_10
Protein domainsIPR018205
Protein domainsPTHR13856
Protein domainsIPR002014
Protein domainsIPR008942
Ownerapollo_admin@sb-roscoff.fr
Notetom1-like protein 2 os:homo sapiens gn:tom1l2 pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length841
Hectar predicted targeting categoryother localisation
Evalue6.9e-123
EggNOG OGsKOG1087@1|root,KOG1087@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameGGA2
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
Descriptionintracellular protein transport
COG categoryL
BRITEko00000,ko00001,ko02000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0006886
GO0019904
GO0046426
GO0005769
GO0045860
GO0016197
GO0070062
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft96_10aEsuBft96_10aEctocarpus subulatus male Bft15bgeneScaffold_576 684860..687566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_10a-0001EsuBft96_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 684860..687391 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_10a-0001-exonEsuBft96_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 684860..684889 -
EsuBft96_10a-0001-exonagat-exon-44060Ectocarpus subulatus male Bft15bexonScaffold_576 685115..685322 -
EsuBft96_10a-0001-exonagat-exon-44059Ectocarpus subulatus male Bft15bexonScaffold_576 686122..686210 -
EsuBft96_10a-0001-exonagat-exon-44057Ectocarpus subulatus male Bft15bexonScaffold_576 686716..686922 -
EsuBft96_10a-0001-exonagat-exon-44058Ectocarpus subulatus male Bft15bexonScaffold_576 687260..687566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_10a-0001-cdsEsuBft96_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 684860..684889 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft96_10a-0001-exonagat-five_prime_utr-15366Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 687392..687566 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft96_10a-0001 ID=EsuBft96_10a-0001|Name=EsuBft96_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=841bp|location=Sequence derived from alignment at Scaffold_576:684860..687566- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTGCATTGGTTGGGGATTCGGATGGAGCTGCGTCTCTCTCTCTGCAG
CAGCAACACCGCAGGCAGCGGGCCAGTGGCTCATCTTCCTTTCTAAAGCC
TGCGCTGCGAACCTGCTCAGCACGTTTGCTATCTACAACAAGGCTACTAG
ACAGCGCAGCCGAAGAACAGACAGGATGGATTTCTTAGCAAACATCGGCA
TCCCTGGCACCGAATTCACTACAGGCATAGGGTCGCTGATCGAAAAAGCC
ACTTCCGAGTCCCTCGTCAACACGGACTGGGCTTTGAACATGCAAATTTG
CGATGAGATCAACCATCAGGGAGATGGACCGAGTCACGCCGCCAAGGCCT
TGAAGCGCCGGCTCAAGAGCGACAACCCGAAAATTCTTGAGCTGACGTTA
ACTCTGTGCGAGACGACCATGAAGAACTGCTCCAGGCCGCTTCACCGAGC
TCTCGGCGCAAGAGAGTTTCTGGCAGAGGTCGCAGGGCTATGCAACGGAC
AGAAGGGATATGAGGTGCGTTCTCGTGCTCTTGGTCTTATCCAAGACTGG
GGAATAGCTTTCCAATCGGACAGGAGCCTTGCCTACTCGGAAACATACGG
CCGCCTGAAGGCCCAGGGTGCTCGTTTCCCAGAGGCAACAGACGCAGCAA
CCACAGCCTTCACGCCTGCGGCGGCGTCATACGGTGCCTCATCCTCCTCG
TCCGCAACTATGGCGGGCAGCGGTGGCGGGGGGGGGGGCGGGGGAGGAGG
AGTGAGGAGTGCAGCCGAAGCGCCCCCCCAAACGATGGAGAAGCTAGAAG
AAGATCTCCAGGTGGCGCTTGTGCGTGACTCCCACAGTTAA
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protein sequence of EsuBft96_10a-0001

>EsuBft96_10 ID=EsuBft96_10|Name=EsuBft96_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MDFLANIGIPGTEFTTGIGSLIEKATSESLVNTDWALNMQICDEINHQGD
GPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGAREFLA
EVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGAR
FPEATDAATTAFTPAAASYGASSSSSATMAGSGGGGGGGGGGVRSAAEAP
PQTMEKLEEDLQVALVRDSHS
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mRNA from alignment at Scaffold_576:684860..687566-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft96_10a-0001 ID=EsuBft96_10a-0001|Name=EsuBft96_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2707bp|location=Sequence derived from alignment at Scaffold_576:684860..687566- (Ectocarpus subulatus male Bft15b)
GCTGTGCATTGGTTGGGGATTCGGATGGAGCTGCGTCTCTCTCTCTGCAG
CAGCAACACCGCAGGCAGCGGGCCAGTGGCTCATCTTCCTTTCTAAAGCC
TGCGCTGCGAACCTGCTCAGCACGTTTGCTATCTACAACAAGGCTACTAG
ACAGCGCAGCCGAAGAACAGACAGGATGGATTTCTTAGCAAACATCGGCA
TCCCTGGCACCGAATTCACTACAGGCATAGGGTCGCTGATCGAAAAAGCC
ACTTCCGAGTCCCTCGTCAACACGGACTGGGCTTTGAACATGCAAATTTG
CGATGAGGTGAGCATGTGTAGTATTCTCGTTCCTCCATACGTTAGACACT
GTCGTAGGTCGCGTGTGGTGGTGTTTTTGGGAAATGGTTTATTTGTGTGT
TCCTCCGACACTTTTTTCGCAAGTTGAACATCACAAACGATCTTCCGAAT
TCCGGTTGTAGCAGTACATACCACGCAGTACAGCTCCTCTTCACACTTTC
ACAGCAGTAGGCTGGGCAGGAGTGCTGTGCTCGCAGTTGTGCAACAGAAG
GGCTTAATTTAACCTACGTAATCCACTGCTGTGGTGGTACACCATGTAGA
CTCATTTGCCTGGTGATCTCTGCTCTTGATTGTTGCTCGATTAGATCAAC
CATCAGGGAGATGGACCGAGTCACGCCGCCAAGGCCTTGAAGCGCCGGCT
CAAGAGCGACAACCCGAAAATTCTTGAGCTGACGTTAACTCTGTGCGAGA
CGACCATGAAGAACTGCTCCAGGCCGCTTCACCGAGCTCTCGGCGCAAGA
GAGTTTCTGGCAGAGGTCGCAGGGCTATGCAACGGACAGAAGGGATATGA
GGTAATATGCATGCAGCATCTTGTACATGTACATTTATCTATCTGTCGCC
GCTGTCCCGACGTCCCAGTACTGCTGTATGCATAGTATACAATTGTGTAG
ATGTGACGTTGCTGCTGGGGGCTATGAGCGTACTGCTGAAGGTTGTTCGA
AATATGGACATATCGAACGTGTGCCACATGACATGTATAGCACTGCTGTC
CTCTGCCGGAGTATGTGCCGACTGCTGAGAAGAAGATAGAGTCGATAGCT
GTAACATAAGGAGCAGGACATGCTCTTGTTTTTTTTATATGCAGACTTCG
TACATACTACATTGCACAGCGTGGTATGCACACCATTGGTGCTCGCTGTT
CCGGTTGTTTACGATCGTCGAATACAGCAATAGTTGTAGATTCTCCACCT
CGCGTCCCACTGCTGCATCATGCAACCTGCAAGCCTTGAAAAGGTATCAT
GTCATGTTTGGTCCACTTGTCTAGTCGTCGTCTGTACCCGTACTATCTCG
CATCAGGTGCGTTCTCGTGCTCTTGGTCTTATCCAAGACTGGGGAATAGC
TTTCCAATCGGACAGGAGCCTTGCCTACTCGGAAACATACGGCCGGTGAG
CAAGGAACCAACCCCAGCGGCCTGATCCTTGGGTGCATGGTGTCCTCCGT
AATGAGCCACACCTTGCCTGTACAGCAGCACAGCAGTGTCACCGCTGTTG
CCGTGCGTCTGCTTTCCAGCAGAATCGGTGTGCATATCTGTGTCAACTTC
GTTCAGCGCGGTGCAGTGGTGTTCAAGTAGAATAGATGAGATTCCTCCAG
CAATGATTGAAAGCTTGGCTGCGTTGAACGTGTTCGTTGAGAGCCGCGGG
GGCGGTGCGGCAGAGAGCACAGCGTCGGCCGCGCTCCCGAATCACAGCTA
TACCTGCAAACTGACGTGAGCACATCGAAAGAAGTCAACCTTCGCTTTAG
CTGGCGTTATGTTTGGTGCATCGTTTCACAGGAGATCGTCGTGCCCTCGC
TGCTGATATGTGTGTGTGTTTGTCCCATCTATTGTAGCGCCGGTTAACAG
GCCTCTCGACGTATGTTCCTAACGCATCAGCGGGGGTCACACTCAAGGAA
GGTCACACAGGAGCTTTTTCATTTTTTTGTTGGTGTTTTATTACCCCACC
GTCCCCCTTGCGGTGCTTGCCCTACTTTTTGTCGCAAGAAGGGTTCTATG
CGCGCGAAAAATCTCCATCGACATGACATGACATGACATGACATGACATG
CCATGACATGACATGACATGACATGACACCTCTCCCCTCTCCCCGTGTCC
CCGTGACCATAGCCCATTTTTTTATATTTGTTCACGTGACGTTGTCGACT
TGGTGCGATACTGTATGCATGTATCCTCCTGTGGTGATGGGCAGCCTGAA
GGCCCAGGGTGCTCGTTTCCCAGAGGCAACAGACGCAGCAACCACAGCCT
TCACGCCTGCGGCGGCGTCATACGGTGCCTCATCCTCCTCGTCCGCAACT
ATGGCGGGCAGCGGTGGCGGGGGGGGGGGCGGGGGAGGAGGAGTGAGGAG
TGCAGCCGAAGCGCCCCCCCAAACGATGGAGAAGCTAGAAGAAGATCTCC
AGGTGCTTCCTACTTTCCTACACCCGTTCTGTGCATTTGGGTTGATGGCC
CCTGGTTTTCTGCACAAGGGTCTGATGAGGTTTTGTGTACGTTTGTGTAC
CGTTTCTCCTGGATTCGTGCTTCGGGATATCTTTCGCTGGCAGAAGTCAG
TCTTTTCTCACACGTCCTTCTCAGGGGCACGCCGGGGGATCGTCGGTACA
TTTCCGCGCACACCCGAGGACCATCAGGTGGCGCTTGTGCGTGACTCCCA
CAGTTAA
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Coding sequence (CDS) from alignment at Scaffold_576:684860..687566-

>EsuBft96_10a-0001 ID=EsuBft96_10a-0001|Name=EsuBft96_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_576:684860..687566- (Ectocarpus subulatus male Bft15b)
ATGGATTTCTTAGCAAACATCGGCATCCCTGGCACCGAATTCACTACAGG
CATAGGGTCGCTGATCGAAAAAGCCACTTCCGAGTCCCTCGTCAACACGG
ACTGGGCTTTGAACATGCAAATTTGCGATGAGATCAACCATCAGGGAGAT
GGACCGAGTCACGCCGCCAAGGCCTTGAAGCGCCGGCTCAAGAGCGACAA
CCCGAAAATTCTTGAGCTGACGTTAACTCTGTGCGAGACGACCATGAAGA
ACTGCTCCAGGCCGCTTCACCGAGCTCTCGGCGCAAGAGAGTTTCTGGCA
GAGGTCGCAGGGCTATGCAACGGACAGAAGGGATATGAGGTGCGTTCTCG
TGCTCTTGGTCTTATCCAAGACTGGGGAATAGCTTTCCAATCGGACAGGA
GCCTTGCCTACTCGGAAACATACGGCCGCCTGAAGGCCCAGGGTGCTCGT
TTCCCAGAGGCAACAGACGCAGCAACCACAGCCTTCACGCCTGCGGCGGC
GTCATACGGTGCCTCATCCTCCTCGTCCGCAACTATGGCGGGCAGCGGTG
GCGGGGGGGGGGGCGGGGGAGGAGGAGTGAGGAGTGCAGCCGAAGCGCCC
CCCCAAACGATGGAGAAGCTAGAAGAAGATCTCCAGGTGGCGCTTGTGCG
TGACTCCCACAGTTAA
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